FFCP PHASE1:Hg19::chr8:55370487..55370503,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:55370487..55370503,+
|short_description=p1@SOX17
|description=CAGE_peak_1_at_SOX17_5end
|association_with_transcript=0bp_to_ENST00000297316,NM_022454,uc003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64321 | |EntrezGene=64321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18122 | |HGNC=18122 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H6I2 | |UniProt=Q9H6I2 | ||
|association_with_transcript=0bp_to_ENST00000297316,NM_022454,uc003xsb.3_5end | |||
|cluster_id=chr8:55370487..55370503,+ | |||
|coexpression_cluster_id=C4762 | |||
|description=CAGE_peak_1_at_SOX17_5end | |||
|id=chr8:55370487..55370503,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.28e-20!119;CL:0002139!1.24e-18!24;CL:0000359!4.99e-18!32;CL:0000115!1.19e-16!35;CL:0002078!4.60e-15!44;CL:0000071!8.64e-15!18;CL:0002546!8.64e-15!18;CL:0000192!4.35e-13!42;CL:0000514!4.35e-13!42;CL:0000213!2.36e-12!57;CL:0000215!2.36e-12!57;CL:0000183!1.10e-10!59;CL:0000187!2.74e-10!54;CL:0000393!1.84e-09!60;CL:0000211!1.84e-09!60;CL:0000680!2.00e-09!57;CL:0000056!2.00e-09!57;CL:0000355!2.00e-09!57;CL:1000413!1.54e-08!9;CL:0002539!3.97e-08!10;CL:0002494!4.01e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.60e-20;24!CL:0000359;1.81e-17;32!CL:0000115;1.58e-16;36!CL:0000071;2.95e-16;18!CL:0002078;1.25e-10;45!CL:1000413;2.60e-09;9!CL:0000192;2.70e-09;43!CL:0002539;7.48e-09;10!CL:0000213;1.03e-08;58!CL:0000215;1.03e-08;58!CL:0002494;3.59e-08;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.59e-20,24;CL:0000222,1.90e-19,121;CL:0000115,1.92e-19,36;CL:0000359,2.82e-18,32;CL:0002078,1.83e-16,45;CL:0000071,2.98e-16,18;CL:0002546,2.98e-16,18;CL:0000213,2.10e-13,58;CL:0000215,2.10e-13,58;CL:0000192,7.00e-12,43;CL:0000514,7.00e-12,43;CL:1000413,2.60e-09,9;CL:0000187,6.90e-09,55;CL:0002539,7.44e-09,10;CL:0002494,3.26e-08,16;CL:0000680,7.50e-08,58;CL:0000056,7.50e-08,58;CL:0000355,7.50e-08,58;CL:0000393,1.46e-07,61;CL:0000211,1.46e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002546;2.95e-16;18!CL:0000514;2.70e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!7.82e-07!14;DOID:120!8.79e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:120;3.34e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:120,3.49e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0004872!2.54e-48!84;UBERON:0000025!6.86e-44!194;UBERON:0003914!1.22e-40!118;UBERON:0004111!1.30e-40!241;UBERON:0000055!4.38e-40!69;UBERON:0001981!2.74e-39!60;UBERON:0007500!2.74e-39!60;UBERON:0004537!2.74e-39!60;UBERON:0006965!2.74e-39!60;UBERON:0000477!4.03e-39!286;UBERON:0002049!3.42e-34!79;UBERON:0007798!3.42e-34!79;UBERON:0001009!7.98e-32!113;UBERON:0001637!3.22e-31!42;UBERON:0003509!3.22e-31!42;UBERON:0004572!3.22e-31!42;UBERON:0004535!3.36e-30!110;UBERON:0007023!6.53e-26!115;UBERON:0000483!7.13e-25!309;UBERON:0004573!4.70e-24!33;UBERON:0004571!4.70e-24!33;UBERON:0000119!4.99e-24!312;UBERON:0000468!5.92e-17!659;UBERON:0000467!6.67e-17!625;UBERON:0000480!1.01e-16!626;UBERON:0000922!4.99e-16!612;UBERON:0000947!2.60e-15!21;UBERON:0010191!2.60e-15!21;UBERON:0000490!3.22e-15!138;UBERON:0003103!5.93e-15!69;UBERON:0001986!8.64e-15!18;UBERON:0004638!8.64e-15!18;UBERON:0004852!8.64e-15!18;UBERON:0000481!2.21e-14!347;UBERON:0007100!4.11e-14!27;UBERON:0002050!4.85e-14!605;UBERON:0005423!4.85e-14!605;UBERON:0000923!1.28e-13!604;UBERON:0005291!1.28e-13!604;UBERON:0006598!1.28e-13!604;UBERON:0002532!1.28e-13!604;UBERON:0000487!1.49e-12!22;UBERON:0000948!1.52e-12!24;UBERON:0005498!1.52e-12!24;UBERON:0004140!1.52e-12!24;UBERON:0009881!1.52e-12!24;UBERON:0004141!1.52e-12!24;UBERON:0003084!1.52e-12!24;UBERON:0007005!1.52e-12!24;UBERON:0004139!1.52e-12!24;UBERON:0004291!1.52e-12!24;UBERON:0002385!1.15e-11!63;UBERON:0001015!1.15e-11!63;UBERON:0000383!1.15e-11!63;UBERON:0000926!2.68e-11!448;UBERON:0004120!2.68e-11!448;UBERON:0006603!2.68e-11!448;UBERON:0001134!4.12e-11!61;UBERON:0002036!4.12e-11!61;UBERON:0003082!4.12e-11!61;UBERON:0006914!1.20e-10!25;UBERON:0003081!1.46e-10!216;UBERON:0005256!6.35e-10!143;UBERON:0003104!5.48e-09!238;UBERON:0009142!5.48e-09!238;UBERON:0001049!6.69e-09!57;UBERON:0005068!6.69e-09!57;UBERON:0006241!6.69e-09!57;UBERON:0007135!6.69e-09!57;UBERON:0004290!7.93e-09!70;UBERON:0003915!1.54e-08!9;UBERON:0004700!1.54e-08!9;UBERON:0001917!1.54e-08!9;UBERON:0003080!2.43e-08!42;UBERON:0004237!3.97e-08!10;UBERON:0004695!3.97e-08!10;UBERON:0002111!3.97e-08!10;UBERON:0004178!3.97e-08!10;UBERON:0002780!7.94e-08!41;UBERON:0001890!7.94e-08!41;UBERON:0006240!7.94e-08!41;UBERON:0002616!8.10e-08!59;UBERON:0003133!1.02e-07!48;UBERON:0000991!6.75e-07!21;UBERON:0009196!6.75e-07!21;UBERON:0009117!6.75e-07!21;UBERON:0005564!6.75e-07!21;UBERON:0003513!8.05e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.28e-25;42!UBERON:0003509;4.28e-25;42!UBERON:0004572;4.28e-25;42!UBERON:0004573;2.58e-24;33!UBERON:0004571;2.58e-24;33!UBERON:0007500;5.37e-22;56!UBERON:0001981;5.37e-22;56!UBERON:0004537;5.37e-22;56!UBERON:0000055;2.54e-20;65!UBERON:0000947;7.72e-17;21!UBERON:0010191;7.72e-17;21!UBERON:0004638;2.95e-16;18!UBERON:0001986;2.95e-16;18!UBERON:0004852;2.95e-16;18!UBERON:0003914;4.21e-15;74!UBERON:0002049;1.63e-13;75!UBERON:0007798;1.63e-13;75!UBERON:0007100;3.10e-13;25!UBERON:0000487;3.91e-13;22!UBERON:0000948;1.63e-11;22!UBERON:0006914;1.42e-10;25!UBERON:0001009;1.13e-09;112!UBERON:0004535;1.21e-09;109!UBERON:0000025;2.08e-09;93!UBERON:0003915;2.60e-09;9!UBERON:0004700;2.60e-09;9!UBERON:0001917;2.60e-09;9!UBERON:0004237;7.48e-09;10!UBERON:0004695;7.48e-09;10!UBERON:0002111;7.48e-09;10!UBERON:0004178;7.48e-09;10!UBERON:0007023;1.80e-07;114!UBERON:0000992;3.84e-07;13!UBERON:0003513;4.43e-07;7!UBERON:0003103;5.14e-07;61 | |||
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| ||
|short_description=p1@SOX17 | |||
}} | }} |
Latest revision as of 12:39, 18 September 2015
Short description: | p1@SOX17 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX17_5end |
Coexpression cluster: | C4762_Endothelial_Wilms_mature_Renal_endometrioid_Smooth_Lymphatic |
Association with transcript: | 0bp_to_ENST00000297316, NM_022454, uc003xsb.3_5end |
EntrezGene: | SOX17 |
HGNC: | 18122 |
UniProt: | Q9H6I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.59e-20 | 24 |
mesodermal cell | 1.90e-19 | 121 |
endothelial cell | 1.92e-19 | 36 |
vascular associated smooth muscle cell | 2.82e-18 | 32 |
meso-epithelial cell | 1.83e-16 | 45 |
blood vessel endothelial cell | 2.98e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.98e-16 | 18 |
lining cell | 2.10e-13 | 58 |
barrier cell | 2.10e-13 | 58 |
smooth muscle cell | 7.00e-12 | 43 |
smooth muscle myoblast | 7.00e-12 | 43 |
endothelial cell of artery | 2.60e-09 | 9 |
muscle cell | 6.90e-09 | 55 |
aortic smooth muscle cell | 7.44e-09 | 10 |
cardiocyte | 3.26e-08 | 16 |
muscle precursor cell | 7.50e-08 | 58 |
myoblast | 7.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.50e-08 | 58 |
electrically responsive cell | 1.46e-07 | 61 |
electrically active cell | 1.46e-07 | 61 |
Ontology term | p-value | n |
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