FFCP PHASE1:Hg19::chr17:8339164..8339186,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81565 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17620 | |||
|TSSclassifier=strong | |||
|UniProt=A6NIZ0,Q9GZM8 | |||
|association_with_transcript=0bp_to_ENST00000299734,ENST00000380025,ENST00000402554,NM_001025579,NM_030808,uc002gli.2,uc002glj.2_5end | |||
|cluster_id=chr17:8339164..8339186,+ | |||
|description=CAGE_peak_2_at_NDEL1_5end | |||
|id=chr17:8339164..8339186,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.53e-18!57;UBERON:0005068!1.53e-18!57;UBERON:0006241!1.53e-18!57;UBERON:0007135!1.53e-18!57;UBERON:0007023!6.14e-16!115;UBERON:0002780!6.77e-16!41;UBERON:0001890!6.77e-16!41;UBERON:0006240!6.77e-16!41;UBERON:0002616!1.10e-15!59;UBERON:0003075!1.95e-15!86;UBERON:0007284!1.95e-15!86;UBERON:0002346!4.49e-15!90;UBERON:0003080!9.05e-15!42;UBERON:0000955!4.13e-14!69;UBERON:0006238!4.13e-14!69;UBERON:0000073!1.17e-13!94;UBERON:0001016!1.17e-13!94;UBERON:0001017!1.24e-13!82;UBERON:0002020!2.78e-13!34;UBERON:0003528!2.78e-13!34;UBERON:0005743!2.92e-13!86;UBERON:0001869!3.15e-13!32;UBERON:0001893!3.69e-13!34;UBERON:0000153!8.65e-13!129;UBERON:0007811!8.65e-13!129;UBERON:0000033!9.52e-13!123;UBERON:0002791!1.49e-12!33;UBERON:0004121!2.13e-12!169;UBERON:0000924!2.48e-12!173;UBERON:0006601!2.48e-12!173;UBERON:0003056!1.25e-11!61;UBERON:0002619!6.54e-11!22;UBERON:0001950!8.36e-10!20;UBERON:0000956!1.20e-09!25;UBERON:0000203!1.20e-09!25;UBERON:0000475!2.04e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.82e-12;32!UBERON:0003528;8.49e-12;34!UBERON:0002020;8.49e-12;34!UBERON:0001893;8.77e-12;34!UBERON:0002619;1.67e-11;22!UBERON:0002780;1.90e-11;41!UBERON:0001890;1.90e-11;41!UBERON:0002791;3.00e-11;32!UBERON:0000073;8.52e-11;53!UBERON:0002616;8.52e-11;53!UBERON:0001950;2.29e-10;20!UBERON:0000956;6.22e-10;25!UBERON:0000203;6.22e-10;25!UBERON:0000955;4.13e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.07e-19,56;UBERON:0005068,1.07e-19,56;UBERON:0006241,1.07e-19,56;UBERON:0007135,1.07e-19,56;UBERON:0000073,1.25e-18,53;UBERON:0002616,1.25e-18,53;UBERON:0002780,5.75e-16,41;UBERON:0001890,5.75e-16,41;UBERON:0003080,5.75e-16,41;UBERON:0006240,5.75e-16,41;UBERON:0003075,6.39e-16,82;UBERON:0007284,6.39e-16,82;UBERON:0002346,1.62e-15,86;UBERON:0007023,2.26e-15,114;UBERON:0000955,5.52e-15,68;UBERON:0006238,5.52e-15,68;UBERON:0001016,1.02e-14,89;UBERON:0001017,2.14e-14,81;UBERON:0010371,5.54e-14,104;UBERON:0003528,2.37e-13,34;UBERON:0002020,2.37e-13,34;UBERON:0001869,2.68e-13,32;UBERON:0001893,3.16e-13,34;UBERON:0003056,7.81e-13,61;UBERON:0004121,9.19e-13,171;UBERON:0000924,9.19e-13,171;UBERON:0006601,9.19e-13,171;UBERON:0002791,3.27e-12,32;UBERON:0002619,5.53e-11,22;UBERON:0010314,1.97e-10,132;UBERON:0001950,7.10e-10,20;UBERON:0000956,1.04e-09,25;UBERON:0000203,1.04e-09,25 | |||
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| |||
|short_description=p2@NDEL1 | |||
}} |
Latest revision as of 15:39, 18 September 2015
Short description: | p2@NDEL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NDEL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000299734, ENST00000380025, ENST00000402554, NM_001025579, NM_030808, uc002gli.2, uc002glj.2_5end |
EntrezGene: | NDEL1 |
HGNC: | 17620 |
UniProt: | A6NIZ0Q9GZM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.07e-19 | 56 |
neural rod | 1.07e-19 | 56 |
future spinal cord | 1.07e-19 | 56 |
neural keel | 1.07e-19 | 56 |
regional part of nervous system | 1.25e-18 | 53 |
regional part of brain | 1.25e-18 | 53 |
regional part of forebrain | 5.75e-16 | 41 |
forebrain | 5.75e-16 | 41 |
anterior neural tube | 5.75e-16 | 41 |
future forebrain | 5.75e-16 | 41 |
neural plate | 6.39e-16 | 82 |
presumptive neural plate | 6.39e-16 | 82 |
neurectoderm | 1.62e-15 | 86 |
adult organism | 2.26e-15 | 114 |
brain | 5.52e-15 | 68 |
future brain | 5.52e-15 | 68 |
nervous system | 1.02e-14 | 89 |
central nervous system | 2.14e-14 | 81 |
ecto-epithelium | 5.54e-14 | 104 |
brain grey matter | 2.37e-13 | 34 |
gray matter | 2.37e-13 | 34 |
cerebral hemisphere | 2.68e-13 | 32 |
telencephalon | 3.16e-13 | 34 |
pre-chordal neural plate | 7.81e-13 | 61 |
ectoderm-derived structure | 9.19e-13 | 171 |
ectoderm | 9.19e-13 | 171 |
presumptive ectoderm | 9.19e-13 | 171 |
regional part of telencephalon | 3.27e-12 | 32 |
regional part of cerebral cortex | 5.53e-11 | 22 |
structure with developmental contribution from neural crest | 1.97e-10 | 132 |
neocortex | 7.10e-10 | 20 |
cerebral cortex | 1.04e-09 | 25 |
pallium | 1.04e-09 | 25 |