FFCP PHASE1:Hg19::chr1:12402867..12402887,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=23595 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-208bp_to_AK057675_5end | |||
|cluster_id=chr1:12402867..12402887,+ | |||
|description=CAGE_peak_9_at_VPS13D_5end | |||
|id=chr1:12402867..12402887,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;3.43e-09;2!CL:0000242;3.43e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.43e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0004140;7.00e-17;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;7.33e-32;2!DOID:178;1.04e-16;1!DOID:326;1.04e-16;1!DOID:3978;1.04e-16;1!DOID:3394;1.04e-16;1!DOID:5844;1.04e-16;1!DOID:1287;1.79e-16;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,8.57e-32,2;DOID:178,1.21e-16,1;DOID:326,1.21e-16,1;DOID:3978,1.21e-16,1;DOID:3394,1.21e-16,1;DOID:5844,1.21e-16,1;DOID:1287,1.93e-16,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.11e-59!115;UBERON:0001049!2.36e-36!57;UBERON:0005068!2.36e-36!57;UBERON:0006241!2.36e-36!57;UBERON:0007135!2.36e-36!57;UBERON:0002616!1.70e-32!59;UBERON:0000955!1.32e-29!69;UBERON:0006238!1.32e-29!69;UBERON:0002780!3.94e-29!41;UBERON:0001890!3.94e-29!41;UBERON:0006240!3.94e-29!41;UBERON:0003075!4.06e-29!86;UBERON:0007284!4.06e-29!86;UBERON:0003080!2.88e-28!42;UBERON:0002020!7.36e-28!34;UBERON:0003528!7.36e-28!34;UBERON:0001869!1.02e-27!32;UBERON:0002346!2.54e-27!90;UBERON:0001017!1.03e-26!82;UBERON:0005743!1.36e-26!86;UBERON:0001893!9.50e-26!34;UBERON:0000073!1.89e-24!94;UBERON:0001016!1.89e-24!94;UBERON:0002791!4.63e-24!33;UBERON:0001950!1.11e-21!20;UBERON:0002619!2.04e-19!22;UBERON:0000956!2.99e-19!25;UBERON:0000203!2.99e-19!25;UBERON:0004121!5.68e-19!169;UBERON:0000033!7.71e-19!123;UBERON:0003056!8.86e-19!61;UBERON:0000153!1.51e-18!129;UBERON:0007811!1.51e-18!129;UBERON:0000924!3.15e-18!173;UBERON:0006601!3.15e-18!173;UBERON:0000025!1.42e-13!194;UBERON:0004111!1.70e-12!241;UBERON:0000477!1.85e-11!286;UBERON:0000064!3.64e-11!219;UBERON:0000062!1.07e-10!511;UBERON:0000200!3.30e-10!6;UBERON:0002308!3.56e-10!9;UBERON:0000125!3.56e-10!9;UBERON:0000475!2.89e-09!365;UBERON:0004733!3.27e-09!12;UBERON:0002028!3.27e-09!12;UBERON:0007277!3.27e-09!12;UBERON:0003076!3.87e-09!15;UBERON:0003057!3.87e-09!15;UBERON:0000483!4.48e-09!309;UBERON:0000119!7.44e-09!312;UBERON:0000369!1.02e-08!4;UBERON:0002435!1.02e-08!4;UBERON:0000204!1.02e-08!4;UBERON:0010082!1.02e-08!4;UBERON:0000481!1.70e-08!347;UBERON:0002298!1.86e-08!8;UBERON:0004732!2.12e-08!13;UBERON:0001872!3.06e-08!5;UBERON:0003978!6.21e-08!3;UBERON:0009751!6.21e-08!3;UBERON:0000946!6.21e-08!3;UBERON:0002523!6.21e-08!3;UBERON:0005983!6.21e-08!3;UBERON:0002165!6.21e-08!3;UBERON:0002062!6.21e-08!3;UBERON:0007280!6.21e-08!3;UBERON:0002021!1.04e-07!5;UBERON:0009663!3.11e-07!7;UBERON:0005383!4.40e-07!3;UBERON:0005382!4.40e-07!3;UBERON:0000467!6.61e-07!625;UBERON:0000480!7.31e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002702;2.75e-31;2!UBERON:0001870;3.11e-21;3!UBERON:0001950;5.05e-18;20!UBERON:0002146;1.04e-16;1!UBERON:0005623;1.04e-16;1!UBERON:0002619;1.83e-16;22!UBERON:0007100;1.65e-15;25!UBERON:0000956;1.42e-14;25!UBERON:0000203;1.42e-14;25!UBERON:0001872;4.96e-13;5!UBERON:0001869;3.26e-12;32!UBERON:0002791;2.32e-11;32!UBERON:0000200;4.05e-11;6!UBERON:0001893;6.29e-11;34!UBERON:0003528;3.50e-10;34!UBERON:0002020;3.50e-10;34!UBERON:0002780;1.10e-07;41!UBERON:0001890;1.10e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002702,1.87e-31,2;UBERON:0001870,2.41e-21,3;UBERON:0001950,4.70e-18,20;UBERON:0002146,8.86e-17,1;UBERON:0005623,8.86e-17,1;UBERON:0002619,1.71e-16,22;UBERON:0000956,1.34e-14,25;UBERON:0000203,1.34e-14,25;UBERON:0007100,2.30e-14,27;UBERON:0001872,4.66e-13,5;UBERON:0002791,1.63e-11,32;UBERON:0001869,1.63e-11,32;UBERON:0000200,3.57e-11,6;UBERON:0003528,7.41e-11,34;UBERON:0002020,7.41e-11,34;UBERON:0001893,7.41e-11,34;UBERON:0007023,4.75e-10,114;UBERON:0002780,4.78e-09,41;UBERON:0001890,4.78e-09,41;UBERON:0003080,4.78e-09,41;UBERON:0006240,4.78e-09,41;UBERON:0000073,5.00e-07,53;UBERON:0002616,5.00e-07,53 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0,0.85870796139317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,2.7499250881402,0.717873024576814,2.39614800598789,4.29226048136571,3.12440040418622,3.76227445925667,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0.607495566580247,0,0.236417121897595,0.681909645754975,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,2.65820453990096,0,1.6274820991845,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,0,8.69526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0.798169295285756,0.205116364240755,0,0.760729777106397,0.484426936895553,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.607838261565552,1.56215619722769,1.44680757550829,0.887821342714695,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0.177404740325278,0,0,0.203909198930495,0.855046056317038,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0.111855431797792,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0.79062257427272,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0.407948941145488,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.803892390468535,0,0.103432995861895,0.213233981900981,0,0,0,0,1.52753179867596,0.202117188958219,0.653150243690884,0.342233301085281,0.0673520530145875,0.286888821570705,0.665320713092027,0,0,0,0,0,0.733448665097199,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p9@VPS13D | |||
}} |
Latest revision as of 13:59, 16 September 2015
Short description: | p9@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | -208bp_to_AK057675_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.43e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
middle frontal gyrus | 1.87e-31 | 2 |
frontal cortex | 2.41e-21 | 3 |
neocortex | 4.70e-18 | 20 |
pulmonary valve | 8.86e-17 | 1 |
semi-lunar valve | 8.86e-17 | 1 |
regional part of cerebral cortex | 1.71e-16 | 22 |
cerebral cortex | 1.34e-14 | 25 |
pallium | 1.34e-14 | 25 |
primary circulatory organ | 2.30e-14 | 27 |
parietal lobe | 4.66e-13 | 5 |
regional part of telencephalon | 1.63e-11 | 32 |
cerebral hemisphere | 1.63e-11 | 32 |
gyrus | 3.57e-11 | 6 |
brain grey matter | 7.41e-11 | 34 |
gray matter | 7.41e-11 | 34 |
telencephalon | 7.41e-11 | 34 |
adult organism | 4.75e-10 | 114 |
regional part of forebrain | 4.78e-09 | 41 |
forebrain | 4.78e-09 | 41 |
anterior neural tube | 4.78e-09 | 41 |
future forebrain | 4.78e-09 | 41 |
regional part of nervous system | 5.00e-07 | 53 |
regional part of brain | 5.00e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
heart disease | 8.57e-32 | 2 |
vascular disease | 1.21e-16 | 1 |
ischemia | 1.21e-16 | 1 |
extrinsic cardiomyopathy | 1.21e-16 | 1 |
myocardial ischemia | 1.21e-16 | 1 |
myocardial infarction | 1.21e-16 | 1 |
cardiovascular system disease | 1.93e-16 | 4 |