FFCP PHASE1:Hg19::chr9:139652568..139652569,-: Difference between revisions
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|id=chr9:139652568..139652569,-
|short_description=p17@LCN8
|description=CAGE_peak_17_at_LCN8_5end
|association_with_transcript=108bp_to_ENST00000371688_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=138307 | |EntrezGene=138307 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27038 | |HGNC=27038 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=108bp_to_ENST00000371688_5end | |||
|cluster_id=chr9:139652568..139652569,- | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_17_at_LCN8_5end | |||
|id=chr9:139652568..139652569,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.55e-98;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001301!1.46e-50!1;UBERON:0001870!9.18e-26!2;UBERON:0002680!5.74e-23!9;UBERON:0001895!5.74e-23!9;UBERON:0010092!5.74e-23!9;UBERON:0006947!6.76e-18!3;UBERON:0004054!6.76e-18!3;UBERON:0000988!9.46e-18!3;UBERON:0004733!1.57e-17!12;UBERON:0002028!1.57e-17!12;UBERON:0007277!1.57e-17!12;UBERON:0004732!2.84e-16!13;UBERON:0003076!2.94e-14!15;UBERON:0003057!2.94e-14!15;UBERON:0005904!8.82e-14!4;UBERON:0002037!1.32e-09!6;UBERON:0006215!1.32e-09!6;UBERON:0001049!1.46e-08!57;UBERON:0005068!1.46e-08!57;UBERON:0006241!1.46e-08!57;UBERON:0007135!1.46e-08!57;UBERON:0002616!2.64e-08!59;UBERON:0007023!1.02e-07!115;UBERON:0002298!1.69e-07!8;UBERON:0000955!3.82e-07!69;UBERON:0006238!3.82e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;5.42e-195;1!UBERON:0006947;2.39e-66;3!UBERON:0004054;2.39e-66;3!UBERON:0005904;3.10e-50;4!UBERON:0000058;3.81e-21;10!UBERON:0003135;2.25e-19;11!UBERON:0004175;6.74e-11;21!UBERON:0003101;1.80e-10;22!UBERON:0000079;1.80e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,5.42e-195,1;UBERON:0006947,2.39e-66,3;UBERON:0004054,2.39e-66,3;UBERON:0005904,3.10e-50,4;UBERON:0005103,5.22e-26,8;UBERON:0000083,5.22e-26,8;UBERON:0009201,5.22e-26,8;UBERON:0006553,5.22e-26,8;UBERON:0003074,5.22e-26,8;UBERON:0003060,5.22e-26,8;UBERON:0000080,2.62e-23,9;UBERON:0002120,2.62e-23,9;UBERON:0004875,2.62e-23,9;UBERON:0005721,2.62e-23,9;UBERON:0005754,2.62e-23,9;UBERON:0007297,2.62e-23,9;UBERON:0003135,2.25e-19,11;UBERON:0004876,2.25e-19,11;UBERON:0003887,6.76e-18,12;UBERON:0006555,8.02e-14,16;UBERON:0004819,8.02e-14,16;UBERON:0000058,6.95e-12,19;UBERON:0003101,1.80e-10,22;UBERON:0000079,1.80e-10,22;UBERON:0004175,2.15e-09,25;UBERON:0002113,4.34e-09,26;UBERON:0003918,4.34e-09,26;UBERON:0011143,4.34e-09,26;UBERON:0005095,4.34e-09,26;UBERON:0007687,4.34e-09,26;UBERON:0003064,1.52e-08,28;UBERON:0000489,7.41e-08,31 | |||
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|short_description=p17@LCN8 | |||
}} | }} |
Latest revision as of 13:12, 16 September 2015
Short description: | p17@LCN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_LCN8_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 108bp_to_ENST00000371688_5end |
EntrezGene: | LCN8 |
HGNC: | 27038 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epididymis | 5.42e-195 | 1 |
male genital duct | 2.39e-66 | 3 |
internal male genitalia | 2.39e-66 | 3 |
duct of male reproductive system | 3.10e-50 | 4 |
mesonephric epithelium | 5.22e-26 | 8 |
mesonephric tubule | 5.22e-26 | 8 |
nephric duct | 5.22e-26 | 8 |
renal duct | 5.22e-26 | 8 |
mesonephric duct | 5.22e-26 | 8 |
pronephric duct | 5.22e-26 | 8 |
mesonephros | 2.62e-23 | 9 |
pronephros | 2.62e-23 | 9 |
nephrogenic cord | 2.62e-23 | 9 |
pronephric mesoderm | 2.62e-23 | 9 |
rostral part of nephrogenic cord | 2.62e-23 | 9 |
presumptive pronephric mesoderm | 2.62e-23 | 9 |
male reproductive organ | 2.25e-19 | 11 |
urogenital ridge | 2.25e-19 | 11 |
intraembryonic coelom | 6.76e-18 | 12 |
excretory tube | 8.02e-14 | 16 |
kidney epithelium | 8.02e-14 | 16 |
duct | 6.95e-12 | 19 |
male organism | 1.80e-10 | 22 |
male reproductive system | 1.80e-10 | 22 |
internal genitalia | 2.15e-09 | 25 |
kidney | 4.34e-09 | 26 |
kidney mesenchyme | 4.34e-09 | 26 |
upper urinary tract | 4.34e-09 | 26 |
kidney rudiment | 4.34e-09 | 26 |
kidney field | 4.34e-09 | 26 |
intermediate mesoderm | 1.52e-08 | 28 |
cavitated compound organ | 7.41e-08 | 31 |