FFCP PHASE1:Hg19::chr3:158928407..158928414,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:158928407..158928414,+ | |||
|description=CAGE_peak_at_chr3:158928407..158928414,+ | |||
|id=chr3:158928407..158928414,+ | |||
|ontology_enrichment_celltype=CL:0002583!2.10e-25!2;CL:0002573!5.50e-18!2;CL:0002591!3.50e-14!1;CL:0002601!5.85e-14!1;CL:0002595!4.55e-11!5;CL:0002334!9.62e-10!12;CL:0000055!2.45e-08!180;CL:0002593!1.45e-07!2;CL:0000192!1.83e-07!42;CL:0000514!1.83e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002591;1.55e-98;1!CL:0002573;5.04e-34;2!CL:0000243;3.48e-07;15!CL:0000125;3.48e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,2.55e-98,1;CL:0002573,4.27e-34,2;CL:0000243,3.38e-07,15;CL:0000125,3.38e-07,15;CL:0000030,3.38e-07,15;CL:0000339,3.38e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000339;3.48e-07;15 | |||
|ontology_enrichment_disease=DOID:4231!1.75e-07!2;DOID:1907!1.75e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003834!4.55e-11!5;UBERON:0001533!4.55e-11!5;UBERON:0002072!9.16e-11!5;UBERON:0007497!9.87e-08!2;UBERON:0003643!9.87e-08!2;UBERON:0003504!9.87e-08!2;UBERON:0003469!9.87e-08!2;UBERON:0003496!9.87e-08!2;UBERON:0004797!9.87e-08!2;UBERON:0002012!9.87e-08!2;UBERON:0008886!9.87e-08!2;UBERON:0007303!9.87e-08!2;UBERON:0002061!9.87e-08!2;UBERON:0005432!9.87e-08!2;UBERON:0004363!9.87e-08!2;UBERON:0002456!1.45e-07!2;UBERON:0003513!3.05e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;3.52e-50;2!UBERON:0002012;3.52e-50;2!UBERON:0008886;3.52e-50;2!UBERON:0000010;2.31e-12;8!UBERON:0010313;2.87e-11;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,4.52e-50,2;UBERON:0007497,4.52e-50,2;UBERON:0003643,4.52e-50,2;UBERON:0003504,4.52e-50,2;UBERON:0003469,4.52e-50,2;UBERON:0003496,4.52e-50,2;UBERON:0002012,4.52e-50,2;UBERON:0008886,4.52e-50,2;UBERON:0007303,4.52e-50,2;UBERON:0002061,4.52e-50,2;UBERON:0005432,4.52e-50,2;UBERON:0004363,4.52e-50,2;UBERON:0004145,5.96e-34,3;UBERON:0003498,5.15e-21,5;UBERON:0005985,5.15e-21,5;UBERON:0010188,9.07e-18,6;UBERON:0002539,9.07e-18,6;UBERON:0003351,9.07e-18,6;UBERON:0008816,9.07e-18,6;UBERON:0000010,2.19e-12,8;UBERON:0000485,2.45e-12,9;UBERON:0010313,3.02e-11,10;UBERON:0002342,3.02e-11,10;UBERON:0001042,3.02e-11,10;UBERON:0009145,3.02e-11,10;UBERON:0005062,3.02e-11,10;UBERON:0006562,2.37e-10,11;UBERON:0009722,2.37e-10,11;UBERON:0007690,2.37e-10,11;UBERON:0008814,7.60e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,1.13008116620243,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473328002922261,1.44862788090568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:158928407..158928414,+ | |||
}} |
Latest revision as of 17:41, 29 July 2015
Short description: | p@chr3:158928407..158928414, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:158928407..158928414, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 2.55e-98 | 1 |
Schwann cell | 4.27e-34 | 2 |
glial cell (sensu Vertebrata) | 3.38e-07 | 15 |
glial cell | 3.38e-07 | 15 |
glioblast | 3.38e-07 | 15 |
glioblast (sensu Vertebrata) | 3.38e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 4.52e-50 | 2 |
developing epithelial placode | 4.52e-50 | 2 |
respiratory system arterial blood vessel | 4.52e-50 | 2 |
respiratory system blood vessel | 4.52e-50 | 2 |
respiratory system artery | 4.52e-50 | 2 |
head blood vessel | 4.52e-50 | 2 |
pulmonary artery | 4.52e-50 | 2 |
pulmonary vascular system | 4.52e-50 | 2 |
pharyngeal vasculature | 4.52e-50 | 2 |
truncus arteriosus | 4.52e-50 | 2 |
aortic sac | 4.52e-50 | 2 |
pharyngeal arch artery | 4.52e-50 | 2 |
outflow tract | 5.96e-34 | 3 |
heart blood vessel | 5.15e-21 | 5 |
coronary vessel | 5.15e-21 | 5 |
protuberance | 9.07e-18 | 6 |
pharyngeal arch | 9.07e-18 | 6 |
pharyngeal epithelium | 9.07e-18 | 6 |
embryonic head | 9.07e-18 | 6 |
peripheral nervous system | 2.19e-12 | 8 |
simple columnar epithelium | 2.45e-12 | 9 |
neural crest-derived structure | 3.02e-11 | 10 |
neural crest | 3.02e-11 | 10 |
chordate pharynx | 3.02e-11 | 10 |
pharyngeal region of foregut | 3.02e-11 | 10 |
neural fold | 3.02e-11 | 10 |
pharynx | 2.37e-10 | 11 |
entire pharyngeal arch endoderm | 2.37e-10 | 11 |
early pharyngeal endoderm | 2.37e-10 | 11 |
pharyngeal arch system | 7.60e-07 | 18 |