FFCP PHASE1:Hg19::chr9:79009244..79009257,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:79009244..79009257,-
|short_description=p4@RFK
|description=CAGE_peak_4_at_RFK_5end
|association_with_transcript=163bp_to_ENST00000376736_5end
|EntrezGene...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55312 | |EntrezGene=55312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30324 | |HGNC=30324 | ||
|TSSclassifier=strong | |||
|UniProt=Q969G6 | |UniProt=Q969G6 | ||
|association_with_transcript=163bp_to_ENST00000376736_5end | |||
|cluster_id=chr9:79009244..79009257,- | |||
|coexpression_cluster_id=C137 | |||
|description=CAGE_peak_4_at_RFK_5end | |||
|id=chr9:79009244..79009257,- | |||
|ontology_enrichment_celltype=CL:0000066!2.36e-09!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.78e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.53e-07;29 | |||
|ontology_enrichment_disease=DOID:305!5.98e-18!106;DOID:0050687!6.86e-14!143;DOID:14566!3.05e-12!239;DOID:162!8.80e-12!235 | |||
|ontology_enrichment_disease_v019=DOID:299;5.95e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.49e-19,106;DOID:0050687,3.88e-15,143;DOID:162,1.16e-12,235;DOID:14566,1.76e-12,239;DOID:299,2.40e-07,25;DOID:3119,9.46e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.44e-10!155;UBERON:0001555!3.44e-10!155;UBERON:0007026!3.44e-10!155;UBERON:0000467!2.06e-09!625;UBERON:0000480!3.42e-09!626;UBERON:0000481!8.94e-09!347;UBERON:0000468!1.70e-08!659;UBERON:0004119!1.85e-08!169;UBERON:0000925!1.85e-08!169;UBERON:0006595!1.85e-08!169;UBERON:0000477!1.59e-07!286;UBERON:0000922!1.67e-07!612;UBERON:0004921!2.77e-07!129;UBERON:0004185!2.77e-07!129;UBERON:0000077!5.57e-07!130;UBERON:0000062!7.52e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.60e-10;9!UBERON:0001557;7.60e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.03e-10,9;UBERON:0001007,1.07e-08,145;UBERON:0001555,1.07e-08,145;UBERON:0007026,1.07e-08,145;UBERON:0004921,6.18e-08,118;UBERON:0004119,3.06e-07,160;UBERON:0000925,3.06e-07,160;UBERON:0006595,3.06e-07,160 | |||
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|phase1_expression=1.09007027562334,0.642301571672949,0.563817616383885,1.0007329835313,0.446961094427288,0.872338524100369,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0.873765488520689,0.791300934685361,0.247532705920093,0.331397375727916,1.34465029290355,1.80808358407193,0.730310090387373,0.487932798790507,0.861847406537515,0,1.25381888591235,5.72471974262113,3.42186062682211,2.63639543149086,0.229240217243854,0.164201178899891,0,0.786728553697808,1.15148819429164,0.464448369948228,0,0,0,0.154934401160603,0.710846162437108,0.880801318004542,0,0.200544447470142,0.651032612147555,0.447830948479849,0.32389366601898,0.515151135268373,0.290796477559129,0.377875943688809,0.242584061187816,0,0.411167888021826,0.619412741790207,0.575384784644301,0.512321413058201,0.47296445977717,0.344745680736619,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0.320929027076094,0,0.329851300186716,0.997318288108159,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.637812899895131,0,0.112328631146495,0.450530678524519,0.32145117339416,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.01210257911091,0.255725123687061,0,1.00267582127178,0.434539556882471,0,0,0.189069634328136,0.665188192387692,0.527008714158756,0.392937226493138,0,0.370784442784429,0.649094787309367,0.348259474598534,1.06366368415092,0,0,0,1.59009925893364,0.860234595106124,1.38856200643038,0,0,0.825354125820202,0,0.258416759169329,1.06729878806013,0.66944122552934,0.805658634218294,0.760272105718513,0.488124115096339,0.735326160691737,0,1.42879565254528,2.46982309888787,1.35133776579987,0,0,1.46561395144326,0,0,0.436094052142534,0,0.633152558322899,0.397227542439656,0.573673241497627,1.41867352879343,0.560677600142307,0,0.24666754841716,0.933633106199299,1.0776853765575,0.490385709340376,0.908144565869588,0.576175924479999,0.937285727335186,0.624320153660641,0,0.747243402759005,0.704606991862589,0.485618833104395,0.421352420106746,1.63323337003915,0.859840221182376,0.723280468230358,1.18800285728205,0.741800787835671,0.910161361938026,0,0.505008341862199,1.12606667884768,0.554128230968366,0.438977620880838,0.30648779579902,0.901428353439581,0.340296549480063,0.538168907066586,0.427114777637135,0.211931901159562,0,0.206105058476878,0.515281080091258,0.37223371266318,0.168776332241266,0.584622030967192,0,0.460249493211497,0.484938170456436,0,0.302256294682921,0,0.773043412653187,1.09098448236334,0.860413786167011,1.21973706129595,1.19276791489337,1.2781333715647,1.0366105501537,1.00928340350251,1.45990943630332,0,0.643240938192885,0,0.928735856063958,0.721879481669586,1.8929088006375,1.68584690078102,3.37415441836875,2.64705534557745,1.52515610864684,1.66089433377768,1.61797569792197,2.35465758150415,2.30848294167834,0.738155454624648,0,0.8231480226628,0,0,1.96565443335525,0.590789906681404,0,1.22988438543114,0.343135620597051,0.219500570817251,0,0,0.0925884451585296,1.62904152655162,1.03993478527958,2.88662684050547,0.579652024875384,0.70445216541493,0.866198686566443,0,1.14152491340759,0,0.858486162094873,0,0.234004265139238,0.445893486866185,0,0.503946384596579,0.141775097242386,0.716468181622786,0.290633938513962,0,0,0,0.207328115540772,0.144119953416961,0,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0.897048674762886,0,1.1734125731352,0.387815147273333,0,0,2.12750493267896,0,0.257207374262142,0,0.266422179016099,0.428933980974443,0,0,0.65147236858747,0,0,0.904318131178758,0,0.199945982364114,0,0.502257091432126,0,0.239624855491583,0,0,1.01346914667305,0.61642896765115,1.61154866915906,0.336255431980582,0,0,0.256686072559497,1.52456774533478,1.30139853857622,0,1.17261385734044,1.27587750330633,0,0,0,0.49076596687656,0,0,0.415941723061614,0.535286966391485,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0.664225598535437,0.368738337083406,0.173767228936166,0.391602314925481,0,0,0,0.106727557803444,0,0,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,0.384417447767103,1.53512174720011,0.160853921143607,0,0.308419387605311,0.355123450626254,0.246381468041427,0,0.116210378459959,1.45031339509947,0.802025881213139,0.460404944679482,0.229628896329213,0.910455840033585,1.18011973463482,0.451199612907412,0.308061348417659,0,0,0.527758144464379,0,0.170093705276516,1.0795795805107,0,0,0,1.01950509218015,0,1.11937377361089,0.219259876645935,0,1.28225062558195,0.656029291399411,0.650756789328606,1.03041011647722,0.640986253728404,0.330037999682352,0,0,0,0.096670718292122,0.924291702687866,0.15350367472613,0.413509717453592,0.214840489736547,0.580066775656914,0.0852266274161009,0.178064071293475,0,0.576570202095319,0.127612712494584,0.50578890427775,0.464845549297286,0,2.7881490806424,0.308033580176089,0.53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| ||
|short_description=p4@RFK | |||
}} | }} |
Latest revision as of 21:40, 17 September 2015
Short description: | p4@RFK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RFK_5end |
Coexpression cluster: | C137_large_ductal_melanoma_cervical_Endothelial_Smooth_chronic |
Association with transcript: | 163bp_to_ENST00000376736_5end |
EntrezGene: | RFK |
HGNC: | 30324 |
UniProt: | Q969G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.78e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.03e-10 | 9 |
digestive system | 1.07e-08 | 145 |
digestive tract | 1.07e-08 | 145 |
primitive gut | 1.07e-08 | 145 |
subdivision of digestive tract | 6.18e-08 | 118 |
endoderm-derived structure | 3.06e-07 | 160 |
endoderm | 3.06e-07 | 160 |
presumptive endoderm | 3.06e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.49e-19 | 106 |
cell type cancer | 3.88e-15 | 143 |
cancer | 1.16e-12 | 235 |
disease of cellular proliferation | 1.76e-12 | 239 |
adenocarcinoma | 2.40e-07 | 25 |
gastrointestinal system cancer | 9.46e-07 | 14 |