FFCP PHASE1:Mm9::chr13:24730505..24730605,+: Difference between revisions
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{{FFCP|EntrezGene=193385|HGNC=|MCL_coexpression_id=1|UniProt=Q80U16|association_with_transcript=0bp_to_ENSMUST00000038477,ENSMUST00000058009,ENSMUST00000110384,ENSMUST00000138547,NM_001080381,NM_029679,uc007pwc.1,uc007pwd.1,uc007pwe.1_5end|description=CAGE_peak_2_at_Fam65b_5end|id=chr13:24730505..24730605,+|ontology_enrichment_celltype=CL:0000117!1.51e-10!23;CL:0000337!1.51e-10!23;CL:0000393!1.06e-08!39;CL:0000211!1.06e-08!39;CL:0000540!3.30e-08!33;CL:0000047!3.30e-08!33;CL:0000031!3.30e-08!33;CL:0000404!3.30e-08!33;CL:0000055!5.06e-08!50;CL:0002319!5.20e-08!43;CL:0000221!1.12e-07!44;CL:0000133!1.12e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-10,23;CL:0000337,1.37e-10,23;CL:0000393,1.20e-08,39;CL:0000211,1.20e-08,39;CL:0000540,3.78e-08,33;CL:0000047,3.78e-08,33;CL:0000031,3.78e-08,33;CL:0000404,3.78e-08,33;CL:0002319,7.09e-08,43;CL:0000221,1.51e-07,44;CL:0000133,1.51e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.23e-19!73;UBERON:0005743!8.23e-19!73;UBERON:0002020!7.72e-18!34;UBERON:0000073!1.59e-17!75;UBERON:0001016!1.59e-17!75;UBERON:0001049!1.71e-17!52;UBERON:0005068!1.71e-17!52;UBERON:0006241!1.71e-17!52;UBERON:0007135!1.71e-17!52;UBERON:0002346!1.78e-17!71;UBERON:0003075!1.78e-17!71;UBERON:0007284!1.78e-17!71;UBERON:0000955!1.54e-16!50;UBERON:0006238!1.54e-16!50;UBERON:0002616!6.28e-16!49;UBERON:0000033!7.36e-16!63;UBERON:0004121!1.34e-15!102;UBERON:0000924!1.34e-15!102;UBERON:0006601!1.34e-15!102;UBERON:0002791!2.00e-15!29;UBERON:0003528!2.00e-15!29;UBERON:0001893!2.00e-15!29;UBERON:0003056!5.45e-15!49;UBERON:0007811!1.74e-14!86;UBERON:0003080!6.36e-14!40;UBERON:0002780!1.85e-13!39;UBERON:0001890!1.85e-13!39;UBERON:0006240!1.85e-13!39;UBERON:0000153!6.26e-13!94;UBERON:0000956!9.21e-12!21;UBERON:0001869!9.21e-12!21;UBERON:0000203!9.21e-12!21;UBERON:0002619!2.87e-11!17;UBERON:0002021!2.12e-07!10;UBERON:0000411!2.12e-07!10;UBERON:0001950!2.12e-07!10;UBERON:0000025!2.47e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.69e-20,64;UBERON:0003075,7.69e-20,64;UBERON:0007284,7.69e-20,64;UBERON:0001017,8.65e-19,73;UBERON:0000073,1.77e-18,54;UBERON:0010314,5.94e-18,92;UBERON:0002020,6.47e-18,34;UBERON:0010371,8.90e-18,73;UBERON:0001049,1.43e-17,52;UBERON:0005068,1.43e-17,52;UBERON:0006241,1.43e-17,52;UBERON:0007135,1.43e-17,52;UBERON:0001016,2.14e-17,75;UBERON:0004121,8.86e-17,95;UBERON:0000924,8.86e-17,95;UBERON:0006601,8.86e-17,95;UBERON:0003528,1.72e-15,29;UBERON:0002791,1.72e-15,29;UBERON:0001893,1.72e-15,29;UBERON:0000955,2.16e-15,47;UBERON:0006238,2.16e-15,47;UBERON:0003056,4.71e-15,49;UBERON:0002616,8.65e-15,46;UBERON:0003080,5.56e-14,40;UBERON:0002780,1.63e-13,39;UBERON:0001890,1.63e-13,39;UBERON:0006240,1.63e-13,39;UBERON:0000956,8.24e-12,21;UBERON:0001869,8.24e-12,21;UBERON:0000203,8.24e-12,21;UBERON:0002619,2.58e-11,17;UBERON:0002021,1.99e-07,10;UBERON:0000411,1.99e-07,10;UBERON:0001950,1.99e-07,10;UBERON:0000025,2.15e-07,114|phase1_expression=1.44133962394315,0,0,0,0,0,0,25.5664180414321,6.19470377467334,7.49006484230379,7.0199366972457,6.38177271962691,17.8048759128454,20.5437945684644,5.99597571268193,12.3509913107794,6.29605690315332,55.9945343510872,63.483982759457,50.9267582157636,8.67441559540912,30.9787767746762,31.3439746966722,1.11994695955385,0.91763712426868,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,1.67412652294763,0.7813353445238,0.523523743973798,1.76469446409304,0.683045484958446,2.42755176515577,10.9530231638752,9.83356232829291,5.68994931701213,7.82391344348039,43.1689809633284,27.2410866590745,26.6368961731768,10.9189408867783,8.62515386189829,43.287912362896,23.211588544363,10.4189077734164,29.327575708098,15.7593391966316,4.64104883049698,40.6656086327792,47.609188134483,46.2696924559511,10.5041804941431,7.11435836888911,0.899899717281399,0.988866362566974,1.4209602298922,4.49400165777607,4.61061966385865,10.6800300677732,14.850653216486,7.78202357000113,17.7103610330358,26.7250934551452,39.5645281464302,41.3093980088599,41.3648453974509,18.7196997698961,21.5791601363967,17.664751324468,33.7628896589296,30.7398482504096,26.045668527838,13.4007839520663,13.5063026407603,22.4613424231911,30.9360014747351,27.0506193518296,36.9070902734095,0.908714319998209,2.11600368298999,3.18850937571846,0.860423876981386,0,0,0,0,4.77511028447956,0,0,0,2.67602497575693,0,0,0,0,0.253359865475099,0.505524445014783,2.62622923353838,23.5633474118926,3.85949561568544,4.16364784238726,4.87144765299426,5.07354093963329,5.12456977878917,7.2904998424137,2.01066546127481,0.988779870937496,7.37456720291549,9.73071607144862,5.66183974815932,10.1587098491781,12.6067565815158,0,8.78342391034641,7.74952815209784,1.02182822083437,12.4607729486157,5.99902730993408,10.8009693012105,26.8125244534633,47.1225620903185,84.314070267732,38.0675261221085,39.8916113435316,29.7136903720171,44.4541060805656,14.0538322113436,10.0769646194175,0.758168275301024,4.41927897361595,2.21204753036596,7.58676944630461,10.2635413989049,15.3718914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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=193385 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q80U16 | |||
|association_with_transcript=0bp_to_ENSMUST00000038477,ENSMUST00000058009,ENSMUST00000110384,ENSMUST00000138547,NM_001080381,NM_029679,uc007pwc.1,uc007pwd.1,uc007pwe.1_5end | |||
|cluster_id=chr13:24730505..24730605,+ | |||
|description=CAGE_peak_2_at_Fam65b_5end | |||
|id=chr13:24730505..24730605,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-10!23;CL:0000337!1.51e-10!23;CL:0000393!1.06e-08!39;CL:0000211!1.06e-08!39;CL:0000540!3.30e-08!33;CL:0000047!3.30e-08!33;CL:0000031!3.30e-08!33;CL:0000404!3.30e-08!33;CL:0000055!5.06e-08!50;CL:0002319!5.20e-08!43;CL:0000221!1.12e-07!44;CL:0000133!1.12e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-10,23;CL:0000337,1.37e-10,23;CL:0000393,1.20e-08,39;CL:0000211,1.20e-08,39;CL:0000540,3.78e-08,33;CL:0000047,3.78e-08,33;CL:0000031,3.78e-08,33;CL:0000404,3.78e-08,33;CL:0002319,7.09e-08,43;CL:0000221,1.51e-07,44;CL:0000133,1.51e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.23e-19!73;UBERON:0005743!8.23e-19!73;UBERON:0002020!7.72e-18!34;UBERON:0000073!1.59e-17!75;UBERON:0001016!1.59e-17!75;UBERON:0001049!1.71e-17!52;UBERON:0005068!1.71e-17!52;UBERON:0006241!1.71e-17!52;UBERON:0007135!1.71e-17!52;UBERON:0002346!1.78e-17!71;UBERON:0003075!1.78e-17!71;UBERON:0007284!1.78e-17!71;UBERON:0000955!1.54e-16!50;UBERON:0006238!1.54e-16!50;UBERON:0002616!6.28e-16!49;UBERON:0000033!7.36e-16!63;UBERON:0004121!1.34e-15!102;UBERON:0000924!1.34e-15!102;UBERON:0006601!1.34e-15!102;UBERON:0002791!2.00e-15!29;UBERON:0003528!2.00e-15!29;UBERON:0001893!2.00e-15!29;UBERON:0003056!5.45e-15!49;UBERON:0007811!1.74e-14!86;UBERON:0003080!6.36e-14!40;UBERON:0002780!1.85e-13!39;UBERON:0001890!1.85e-13!39;UBERON:0006240!1.85e-13!39;UBERON:0000153!6.26e-13!94;UBERON:0000956!9.21e-12!21;UBERON:0001869!9.21e-12!21;UBERON:0000203!9.21e-12!21;UBERON:0002619!2.87e-11!17;UBERON:0002021!2.12e-07!10;UBERON:0000411!2.12e-07!10;UBERON:0001950!2.12e-07!10;UBERON:0000025!2.47e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.69e-20,64;UBERON:0003075,7.69e-20,64;UBERON:0007284,7.69e-20,64;UBERON:0001017,8.65e-19,73;UBERON:0000073,1.77e-18,54;UBERON:0010314,5.94e-18,92;UBERON:0002020,6.47e-18,34;UBERON:0010371,8.90e-18,73;UBERON:0001049,1.43e-17,52;UBERON:0005068,1.43e-17,52;UBERON:0006241,1.43e-17,52;UBERON:0007135,1.43e-17,52;UBERON:0001016,2.14e-17,75;UBERON:0004121,8.86e-17,95;UBERON:0000924,8.86e-17,95;UBERON:0006601,8.86e-17,95;UBERON:0003528,1.72e-15,29;UBERON:0002791,1.72e-15,29;UBERON:0001893,1.72e-15,29;UBERON:0000955,2.16e-15,47;UBERON:0006238,2.16e-15,47;UBERON:0003056,4.71e-15,49;UBERON:0002616,8.65e-15,46;UBERON:0003080,5.56e-14,40;UBERON:0002780,1.63e-13,39;UBERON:0001890,1.63e-13,39;UBERON:0006240,1.63e-13,39;UBERON:0000956,8.24e-12,21;UBERON:0001869,8.24e-12,21;UBERON:0000203,8.24e-12,21;UBERON:0002619,2.58e-11,17;UBERON:0002021,1.99e-07,10;UBERON:0000411,1.99e-07,10;UBERON:0001950,1.99e-07,10;UBERON:0000025,2.15e-07,114 | |||
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| |||
|short_description=p2@Fam65b | |||
}} |
Latest revision as of 07:51, 27 September 2015
Short description: | p2@Fam65b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Fam65b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000038477, ENSMUST00000058009, ENSMUST00000110384, ENSMUST00000138547, NM_001080381, NM_029679, uc007pwc.1, uc007pwd.1, uc007pwe.1_5end |
EntrezGene: | Fam65b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.37e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-10 | 23 |
electrically responsive cell | 1.20e-08 | 39 |
electrically active cell | 1.20e-08 | 39 |
neuron | 3.78e-08 | 33 |
neuronal stem cell | 3.78e-08 | 33 |
neuroblast | 3.78e-08 | 33 |
electrically signaling cell | 3.78e-08 | 33 |
neural cell | 7.09e-08 | 43 |
ectodermal cell | 1.51e-07 | 44 |
neurectodermal cell | 1.51e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 7.69e-20 | 64 |
neural plate | 7.69e-20 | 64 |
presumptive neural plate | 7.69e-20 | 64 |
central nervous system | 8.65e-19 | 73 |
regional part of nervous system | 1.77e-18 | 54 |
structure with developmental contribution from neural crest | 5.94e-18 | 92 |
gray matter | 6.47e-18 | 34 |
ecto-epithelium | 8.90e-18 | 73 |
neural tube | 1.43e-17 | 52 |
neural rod | 1.43e-17 | 52 |
future spinal cord | 1.43e-17 | 52 |
neural keel | 1.43e-17 | 52 |
nervous system | 2.14e-17 | 75 |
ectoderm-derived structure | 8.86e-17 | 95 |
ectoderm | 8.86e-17 | 95 |
presumptive ectoderm | 8.86e-17 | 95 |
brain grey matter | 1.72e-15 | 29 |
regional part of telencephalon | 1.72e-15 | 29 |
telencephalon | 1.72e-15 | 29 |
brain | 2.16e-15 | 47 |
future brain | 2.16e-15 | 47 |
pre-chordal neural plate | 4.71e-15 | 49 |
regional part of brain | 8.65e-15 | 46 |
anterior neural tube | 5.56e-14 | 40 |
regional part of forebrain | 1.63e-13 | 39 |
forebrain | 1.63e-13 | 39 |
future forebrain | 1.63e-13 | 39 |
cerebral cortex | 8.24e-12 | 21 |
cerebral hemisphere | 8.24e-12 | 21 |
pallium | 8.24e-12 | 21 |
regional part of cerebral cortex | 2.58e-11 | 17 |
occipital lobe | 1.99e-07 | 10 |
visual cortex | 1.99e-07 | 10 |
neocortex | 1.99e-07 | 10 |
tube | 2.15e-07 | 114 |