FFCP PHASE1:Hg19::chr4:467892..467963,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=170960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31,29425 | |||
|TSSclassifier=strong | |||
|UniProt=D6RGC2,B4E159 | |||
|association_with_transcript=0bp_to_ENST00000451020,ENST00000505900,ENST00000506646_5end | |||
|cluster_id=chr4:467892..467963,- | |||
|description=CAGE_peak_1_at_ABCA11P_5end,CAGE_peak_1_at_ZNF721_5end | |||
|id=chr4:467892..467963,- | |||
|ontology_enrichment_celltype=CL:0000542!1.90e-17!53;CL:0000051!1.90e-17!53;CL:0000838!3.19e-17!52;CL:0000791!1.37e-10!18;CL:0000789!1.37e-10!18;CL:0002420!1.37e-10!18;CL:0002419!1.37e-10!18;CL:0000790!1.37e-10!18;CL:0000084!5.26e-09!25;CL:0000827!5.26e-09!25;CL:0000945!1.48e-08!24;CL:0000826!1.48e-08!24;CL:0000236!9.47e-08!14;CL:0000625!2.20e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.52e-10;18!CL:0000789;1.52e-10;18!CL:0002419;1.52e-10;18!CL:0000542;1.94e-10;53!CL:0000084;4.81e-09;25!CL:0000945;1.49e-08;24!CL:0000236;7.27e-08;13!CL:0000625;2.29e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.90e-17,53;CL:0000051,1.90e-17,53;CL:0000838,3.19e-17,52;CL:0000791,1.37e-10,18;CL:0000789,1.37e-10,18;CL:0002420,1.37e-10,18;CL:0002419,1.37e-10,18;CL:0000790,1.37e-10,18;CL:0000084,5.26e-09,25;CL:0000827,5.26e-09,25;CL:0000945,1.48e-08,24;CL:0000826,1.48e-08,24;CL:0000236,9.47e-08,14;CL:0000625,2.20e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.52e-10;18!CL:0000051;1.94e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.72e-16!115;UBERON:0000073!1.68e-11!94;UBERON:0001016!1.68e-11!94;UBERON:0001017!4.88e-11!82;UBERON:0005743!1.54e-10!86;UBERON:0001049!6.31e-10!57;UBERON:0005068!6.31e-10!57;UBERON:0006241!6.31e-10!57;UBERON:0007135!6.31e-10!57;UBERON:0002780!8.55e-09!41;UBERON:0001890!8.55e-09!41;UBERON:0006240!8.55e-09!41;UBERON:0003080!9.05e-09!42;UBERON:0000955!7.15e-08!69;UBERON:0006238!7.15e-08!69;UBERON:0002616!9.21e-08!59;UBERON:0002020!9.48e-07!34;UBERON:0003528!9.48e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-15,114;UBERON:0001016,5.55e-12,89;UBERON:0001017,5.02e-11,81;UBERON:0001049,6.20e-10,56;UBERON:0005068,6.20e-10,56;UBERON:0006241,6.20e-10,56;UBERON:0007135,6.20e-10,56;UBERON:0000073,5.30e-09,53;UBERON:0002616,5.30e-09,53;UBERON:0002780,8.55e-09,41;UBERON:0001890,8.55e-09,41;UBERON:0003080,8.55e-09,41;UBERON:0006240,8.55e-09,41;UBERON:0000955,7.47e-08,68;UBERON:0006238,7.47e-08,68;UBERON:0003528,9.48e-07,34;UBERON:0002020,9.48e-07,34 | |||
|phase1_expression=11.6274162733156,11.9896293378951,15.7868932587488,11.0080628188443,18.7723659659461,6.97870819280295,12.6649939084155,8.84407822797563,15.4099520637905,10.3208253330634,18.1428303672831,11.1405099786388,9.75937819445278,30.8178218870516,21.8722267980424,14.7911532219391,10.8485015044316,13.8758917173601,11.2224543721817,15.2670112015217,9.58803248847989,9.09018692286455,22.0401710090914,22.5842801370259,19.08248121841,39.3529039601949,36.6989634841257,37.308910342684,29.5023207636678,36.4637928192352,13.4690027284986,17.4690032650996,10.843413076017,20.7062245693401,35.1701090634569,36.6796619817548,42.5720637035528,15.5118714388926,16.2441002450815,18.8799457522791,10.7479427635164,22.9964502873475,23.9545277899793,18.029381608666,19.2716731281293,15.2827958548324,17.4321777679263,18.5025549609822,17.6532631410209,20.1384674625505,18.4435708700952,26.0130452877444,18.2715210790408,20.0100251910986,20.3139729891513,16.7535682192918,14.191119803008,23.3712423822888,11.9372718024652,19.2557416245656,12.1474053901818,19.4612267110163,17.7522655283252,15.344091019177,16.5419266018293,13.6172453925874,14.9477339758938,20.3511418857962,13.5585558789252,19.9813737128707,13.3187890579341,13.9945501675275,26.2663781575934,22.8155709216897,26.7881417955955,23.0624510059213,25.2739420079614,25.3798948902146,24.9124659380474,27.3612233991599,22.2786678462981,23.0156833743439,65.1186104506894,64.4443561289315,70.2712310552208,75.5312493942718,64.864149899834,62.0732635150842,50.9004552044344,58.1972790266572,62.0442136329299,51.6768726646426,61.5459897281618,42.2948251452883,70.063570372692,33.4497787664348,64.3240948272234,46.7682807671506,44.409923783894,43.9700482877483,98.4285245233443,118.835399239418,68.189354942769,36.2083984876814,58.0373637725429,59.3710837484105,63.0973002572486,34.2003823667553,26.1419288595355,29.7632607332654,39.2417025255905,40.2826289171723,93.1239616657739,98.7225655651041,98.2633923766782,42.9442408823776,69.3629093419477,79.7215673519702,86.7857543626895,75.1814377804868,67.7126792010675,60.8289308446959,69.1139796566977,79.8636453603571,64.9639778072198,63.6930807998405,63.2268557629206,48.7888318603853,34.2323450602889,45.1852140114333,14.6284119788377,16.0968206328873,19.051521714686,17.7105184668437,8.02140657017423,12.4568006306308,11.1340032587154,11.1926020169606,26.7533532574312,18.8469987843179,19.3236528524877,21.1531206928806,13.1146303785315,20.763928795928,32.1301919718137,28.034887705182,13.0298801308488,40.0664248832975,40.6116386653891,32.6882601170017,13.9133685156694,18.9251610923347,8.33137203858226,11.3061588384802,13.8434813949269,12.9305479711832,14.8386426241136,27.1337597127795,20.9902094985159,20.0832367658802,22.1556124410031,25.8492515944294,15.3759096255347,14.3388601334889,17.012980905517,28.1294144094851,19.5340554184768,18.4682827992648,12.2653309972707,15.1882505530901,17.7705691612495,35.5807127077371,23.2668158488995,19.1881382942715,18.3879622127268,20.3875123779973,23.0391974615001,31.5520282823695,13.8320669057359,10.6528744027038,11.7423895302675,11.3467072271894,27.3865711151794,20.0718901383835,19.942352179842,15.8925299027178,18.43762958336,21.0889288650417,14.6715236110251,10.8389646093445,16.7382522218017,25.953024200272,19.5866262685439,17.8372524511856,26.1317339206263,18.4251475967652,25.2114906068868,10.6920257155385,12.3633464639278,9.10161361938026,13.6537446945085,23.5670559535693,18.3924224211787,23.5504498161555,13.608306247306,12.8724874235588,8.86404547548921,17.6954205729633,32.1107447883063,20.2879519377639,20.3454625113179,24.0072876867522,19.476928026065,25.2487729244717,14.517114793864,23.6286865137773,14.8104247845022,28.5250164895849,18.6861294243868,20.0441110455327,22.7206139210633,18.1353776809752,12.5474838309761,13.7215205745941,21.0014512854943,16.3478619371732,62.5725112444824,64.9395864775278,51.8224985198052,32.9642154948878,48.4456033681207,59.4913095293603,15.6449532329816,18.6539872075937,13.8134921352481,26.9333398258548,22.3782639317572,11.4757596038649,9.7779120245299,14.4606617930089,9.26469370952109,9.36881609597346,9.49082476444386,9.03369764673102,9.41863032601661,7.69494313892781,11.0723318193697,11.2193419042757,8.6430542379594,13.2307840246988,24.0834566161479,18.6737171168749,19.4960669204863,49.0024040350262,20.1701039210706,21.6175440976142,21.401305654682,8.99214026060957,18.6983888685633,28.2394757733515,14.9871820442749,14.5590869939141,17.3197610430328,22.4904985651649,11.7408694235822,17.9014395223732,14.3525508898749,22.0694816592134,15.8040879591855,15.4527509177077,7.63272718870932,15.9122900294682,12.4850176322532,23.4334584966942,21.501712409454,18.0054373497831,28.0318176059915,22.0881793270611,14.9519244874432,105.922596147628,16.9052993305394,38.9776857216651,41.9389064443358,47.0884276680397,16.7634440931326,4.96584953225761,3.51652341630141,8.55362230113526,11.2081967046623,11.1126931402249,17.4354123904653,14.0163855431701,10.899001720832,27.5751954686772,18.7443987848778,39.3422090437071,11.834238535784,11.9672152463192,12.4808924293639,13.1175760873692,15.6034045225606,11.9889980557245,27.0228408013899,23.8753506372235,12.3486050517115,19.8699072419178,26.6543961556909,15.8390374586686,18.9906807547539,21.7883364650074,15.5957866244009,7.29742683847143,5.52482800575339,6.32501818449095,12.2208676300707,13.7834323000937,11.4109524032575,21.8619773068045,13.9723899334261,20.0548278828683,30.9354997422135,42.5586442036163,39.8911013490107,39.1446260653233,45.2288431115985,61.1657313130822,30.9315525111078,27.9752163108362,32.5348763343113,13.4821264310493,17.9496875522415,24.8649308061621,34.1082346979209,28.5097197004016,24.4138521329762,15.8057854763413,19.805617756485,15.2971342582917,18.7426263988341,12.3387900888365,6.82222512167955,13.4514992680256,25.2405727443466,9.95593510125197,20.5045330144676,17.0347006992584,12.6963066810017,55.4138310009338,39.2599845489883,36.1806420953676,15.4595061437592,9.98612637062982,7.55975733324201,11.4129591596637,18.1085128479914,10.3844234940237,11.4043842837574,17.9097537173346,10.1337970320473,7.42090332224955,14.341501523647,17.9337342566258,21.927950655687,17.1353961630595,18.3612397966736,20.6669658801674,13.8349464509267,19.6132506433459,15.2703216058927,12.20010825645,13.899187985699,9.47519187105565,23.4896778168465,13.3339460760065,11.6911379722609,30.9266272656126,10.2360045663807,15.6486208854394,14.2504504627412,13.880452742126,15.1730005024558,12.5422443463713,16.0572052018374,15.7904441696458,12.7608610191642,27.6267444573878,24.8363678473655,21.0289102595439,13.4486004736879,25.3795147838156,29.0575652846577,0,0,9.76251414593493,6.50060246036521,8.03419649220798,21.2675580242668,21.1046605447063,19.3414630154923,15.7133692632365,29.0034661144339,25.5229381289042,17.6419118751329,16.9160867728801,26.4455864577565,17.6814861975898,41.3465188482453,15.274824909188,22.777431915567,20.4628025439916,12.5466708628908,7.39280592422613,17.5660990004617,18.2685928335765,8.15426564057248,15.1712379946511,21.5851854228607,24.6775951280606,15.250415513906,9.98001386114202,11.5543526769159,9.5460974377781,17.2688700843831,23.2035470282476,10.7069441597061,14.9621750979022,12.9396788206922,4.75530963519025,18.5353720745152,16.0919133899565,16.5725172949273,13.7345190783782,20.6114866226058,17.8170844261678,15.821136326834,9.37321084028411,16.5859743810305,13.1535265576129,6.36653087693356,14.4296845450259,9.9426084711725,11.4634694296908,12.6763021139509,20.0775893085672,15.8180956031125,11.0568025959188,21.9951859723771,14.9886421061342,17.7819242198347,15.5584001243943,15.3971276907792,22.0348638141423,8.71392958196524,15.2447378805852,30.1260162485693,13.3456665528081,11.7930032967338,12.4160442990269,24.5804038221447,41.6107039570379,46.6428696356849,27.912712171534,48.599282193389,53.4770955012052,40.2053452939485,49.6828922259066,33.3112574043594,32.7949898361343,25.0244762368473,14.9474531748429,35.4884064490123,31.450688428865,57.9806023289575,47.6684555459179,20.9558340004457,31.0238699614434,34.0794468185451,28.2421088038863,28.3605149894593,17.802304964589,30.2392198841935,0,35.7205651161383,0,11.5025833098897,15.7563107945421,0,43.9354292961095,48.3140393047618,56.561859040337,0,0,32.0027237264052,30.2910359893101,36.6379164797602,15.5085705596634,36.4924053796029,32.2317994398167,27.5488384371396,60.4023142783933,24.4357086253515,21.4870036263921,20.1935982966194,30.7160702099232,35.7893153195867,35.3080235190387,31.5003635214824,10.2178402020591,53.8369790726383,17.5338229660941,38.6797481743607,54.6694062843779,50.4184604735623,27.5709964232796,19.5954940226939,19.5913005501173,41.8909548740925,23.0207566602092,39.6546490660473,43.1069566224492,8.89095921157095,25.2026513984757,39.9830503077579,15.9691038400955,29.1679092415461,44.3422199980712,26.0999847156526,16.386256553112,51.6134910094316,13.9468732243082,19.305628901522,45.4903196877877,46.1842486522557,51.3730003772027,35.4553529558699,82.3941376112249,89.0163042446358,52.6074761737315,27.6425600414005,31.0474621029122,29.2789862985067,40.2449851974859,18.1167868796732,12.6810147413433,23.3369875465408,35.8536327342627,24.5630892993578,13.1900534498682,28.7838779050063,26.5702575308915,23.7040187156487,20.2778251918191,31.5833924864053,34.1148809712867,31.8861015254101,43.8331122592868,42.4360665877611,32.0717058082601,20.7305666362118,17.3864277863747,64.2674260034011,16.9194528283346,27.4218449960351,30.5515072466813,72.0546342693911,32.2501880650372,30.2823653565821,32.352543830725,25.6824847135612,34.2026090758995,31.5646785343102,44.6115331165165,22.5785752966706,29.5938302137043,37.5071219750858,30.3012034014185,23.1894747236551,70.0507134471535,25.2999187009283,29.2447703991161,37.4020910139314,27.3121639014286,22.6997616568622,50.6604991933031,30.9244520819299,30.3729542086479,20.1864338673618,21.5036240253594,39.3135003544568,45.74828463745,22.6409815216459,26.6776007364577,19.9540560639298,30.3575621608753,60.7202151637522,33.6711303762993,26.4490914568229,1.39100228192093,47.8629617426443,52.0166678074576,31.5825751791043,23.0529234318501,21.3796282252879,20.7490200701913,48.6780533705142,52.8512593414851,41.9199462145516,39.7608113809384,9.66345541928861,25.6858949479131,30.439428276889,23.2555936210814,22.82709660222,30.6214347241993,42.0299513198419,16.6070564487064,20.198975746738,15.2474665482002,24.2975689106861,28.6450530014605,27.2791749339189,39.5364420988002,16.3105898291897,12.7207730741867,21.7674450856993,15.8531948758658,43.1035013251579,26.2347997083055,25.5489160981616,30.8708230852167,48.5247483867712,25.91003961213,35.7853360414186,36.6387162440138,62.0507153074974,69.3198760450058,64.8086927325529,47.4694911173666,43.3329094552452,27.033552712821,16.7717343799633,25.7694662868378,19.9851980794343,48.6817551354464,31.7338590619135,32.6255835443057,22.1555551175744,13.2418394073086,23.6469740018917,15.203988849104,13.8275438592203,16.9825427256893,11.9730191562487,30.5384177187541,20.1057865706798,17.4500620940994,16.7069546393014,17.2258955585888,29.9936458758797,33.1903830374152,19.8460731945822,19.0300056025501,30.6479874069284,50.4625819369928,28.9967338743037,46.6396060503234,46.8339567598128,22.288045503704,23.6186265374967,32.6410682021684,39.6090032555866,32.4726311369269,36.7217346394981,43.1898764688144,38.1009317385804,43.5633765700008,35.9297971127655,30.3906873715738,37.3830903679192,21.6095482236014,15.9100930176665,21.8715713933687,28.8133323329131,17.9843160133329,23.291316150119,52.4535094503707,28.4045216077217,11.4926198222893,19.3982047173196,14.9797582605706,16.6674644642078,17.6097531226803,22.2452805399134,14.1880842406093,17.5427871565357,13.5230364507019,15.8205010488908,18.4784249909895,15.2933058135626,16.768399342636,17.8323669371568,21.5331788791976,14.0871166689168,20.5852924326189,14.4705980624142,18.3091829942098,15.275287373015,15.3597096570759,13.4569790364763,14.3314519931502,24.8017214091155,14.4226196176773,16.1639754607641,30.2843755748762,31.5896521867977,18.0130936754938,19.5745718973909,10.8818844245891,17.3641855742875,31.3262981768279,21.4906609297785,6.48483039038042,16.6655877679817,15.7253339891834,18.9055757505496,22.4693446068587,21.2680460427996,37.6519072487006,17.6238774582882,39.9566880478502,26.5010020021568,21.5241041307648,30.2595979373312,24.8983485123274,15.2379203427306,17.9615304854833,17.198916043524,18.3509775073922,42.7093149558823,22.7006381426734,34.2437067468424,28.1157810516083,18.6623178009892,56.7851008588213,43.6690486156561,31.924986196747,40.0799372164691,31.2307855115406,45.0658830615568,40.5269949126937,28.4908908166354,11.1301522728697,74.3666255361819,52.0370986385555,19.3971769029876,24.499638188256,29.8665896698537,36.8411098446521,38.9506616099449,31.5879200930763,36.0462525597057,20.954647496658,37.7853010778532,39.9754376725632,21.0036117592195,38.6940692580588,28.2480041723386,35.5819051743042,16.3994301050882,18.6397180036227,19.8916222116275,33.619016772118,23.1960829009048,25.008448359459,33.0002435046592,14.9032444934188,49.9753571413613,28.4333231243441,32.8052801417816,43.4042272652487,25.0492450265932,38.2882366312754,20.2855373737157,39.2006830927542,53.8166007740439,22.9972369751271,23.0351789427663,48.7611397217295,54.6269043812968,82.8690376518723,23.328723352774,28.5780289138333,20.2355851136154,40.0341727233539,23.08624352056,26.8300018806608,25.5832224351759,35.0864125041798,45.0921743058925,32.2312987810857,31.9605552178323,31.5254283179187,74.0515116224928,30.3775312750789,40.9255254387762,44.8691901920963,29.7297645637411,15.2325159298748,20.3071840879776,18.7790324803345,11.0601545890255,29.6856877585992,24.494724151227,26.8422224991347,30.4838676137469,18.09944261498,14.8899065118874,16.2441619626164,18.0087245194446,40.2415957822496,32.3082501203014,25.8971534875158,19.1979448821182,11.598144313382,38.371168451672,13.8024283442642,49.1408414648579,29.6111026036146,65.3957815005578,22.8676274830493,46.9494443492355,27.859871076968,34.5324105596252,27.2784031889683,30.1532435757304,25.6887436340772,40.2432357585638,53.1713056585484,35.5030811170056,11.3851166840837,31.1086768513315,23.0114660065671,7.79541016214446,53.0305197658803,31.7605384544123,21.1034794392513,32.1348010828468,33.4872376885315,45.4386478590101,0,20.9413789788017,35.3444059175706,38.6189593576242,15.9957857811703,20.7979032884138,11.6809171773423,39.99475667272,24.3662225479041,41.4304098307399,42.2233755131804,61.99443802161,52.5638825339313,70.198111001865,30.8419301748234,22.7769510632752,41.458471972939,46.7517141295766,30.4924594118403,36.8999868768798,34.1675333032472,37.3689780061065,20.295867127091,33.6056995708711,28.4985236431089,26.7791599913262,24.6407976781402,28.6919745842143,31.916381399741,34.9293374373314,20.5950269585766,16.4360112651682,19.307228228694,21.0190972929413,35.1961413605181,35.5722602572141,24.0068745206286,31.2905683867191,27.5745097219706,25.3249108919554 | |||
|short_description=p1@ABCA11P,p1@ZNF721 | |||
}} |
Latest revision as of 21:44, 17 September 2015
Short description: | p1@ABCA11P, p1@ZNF721 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA11P_5end, CAGE_peak_1_at_ZNF721_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000451020, ENST00000505900, ENST00000506646_5end |
EntrezGene: | ZNF721 |
HGNC: | 29425&submit=Submit 31, 29425 |
UniProt: | D6RGC2B4E159 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.90e-17 | 53 |
common lymphoid progenitor | 1.90e-17 | 53 |
lymphoid lineage restricted progenitor cell | 3.19e-17 | 52 |
mature alpha-beta T cell | 1.37e-10 | 18 |
alpha-beta T cell | 1.37e-10 | 18 |
immature T cell | 1.37e-10 | 18 |
mature T cell | 1.37e-10 | 18 |
immature alpha-beta T cell | 1.37e-10 | 18 |
T cell | 5.26e-09 | 25 |
pro-T cell | 5.26e-09 | 25 |
lymphocyte of B lineage | 1.48e-08 | 24 |
pro-B cell | 1.48e-08 | 24 |
B cell | 9.47e-08 | 14 |
CD8-positive, alpha-beta T cell | 2.20e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.18e-15 | 114 |
nervous system | 5.55e-12 | 89 |
central nervous system | 5.02e-11 | 81 |
neural tube | 6.20e-10 | 56 |
neural rod | 6.20e-10 | 56 |
future spinal cord | 6.20e-10 | 56 |
neural keel | 6.20e-10 | 56 |
regional part of nervous system | 5.30e-09 | 53 |
regional part of brain | 5.30e-09 | 53 |
regional part of forebrain | 8.55e-09 | 41 |
forebrain | 8.55e-09 | 41 |
anterior neural tube | 8.55e-09 | 41 |
future forebrain | 8.55e-09 | 41 |
brain | 7.47e-08 | 68 |
future brain | 7.47e-08 | 68 |
brain grey matter | 9.48e-07 | 34 |
gray matter | 9.48e-07 | 34 |