FFCP PHASE1:Mm9::chr15:76984156..76984180,-: Difference between revisions
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{{FFCP|EntrezGene=93686|HGNC=|UniProt=Q8BP71|association_with_transcript=61bp_to_ENSMUST00000111581,ENSMUST00000166610,NM_001110828,NM_001110829,NM_001110830,uc007wnc.2,uc007wnd.2,uc007wne.2,uc007wnf.2,uc011zvf.1,uc011zvg.1_5end|description=CAGE_peak_6_at_Rbfox2_5end|id=chr15:76984156..76984180,-|ontology_enrichment_celltype=CL:0000393!8.44e-18!39;CL:0000211!8.44e-18!39;CL:0000540!6.00e-15!33;CL:0000047!6.00e-15!33;CL:0000031!6.00e-15!33;CL:0000404!6.00e-15!33;CL:0000055!1.85e-13!50;CL:0000117!6.57e-13!23;CL:0000337!6.57e-13!23;CL:0002319!1.08e-11!43;CL:0000221!4.06e-11!44;CL:0000133!4.06e-11!44;CL:0002321!8.14e-07!70;CL:0000220!8.14e-07!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.74e-18,39;CL:0000211,1.74e-18,39;CL:0000540,1.63e-15,33;CL:0000047,1.63e-15,33;CL:0000031,1.63e-15,33;CL:0000404,1.63e-15,33;CL:0000117,2.18e-13,23;CL:0000337,2.18e-13,23;CL:0002319,2.67e-12,43;CL:0000221,1.52e-11,44;CL:0000133,1.52e-11,44;CL:0002321,7.39e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.83e-15!73;UBERON:0005743!5.83e-15!73;UBERON:0000073!1.47e-14!75;UBERON:0001016!1.47e-14!75;UBERON:0004121!5.02e-13!102;UBERON:0000924!5.02e-13!102;UBERON:0006601!5.02e-13!102;UBERON:0002346!6.02e-13!71;UBERON:0003075!6.02e-13!71;UBERON:0007284!6.02e-13!71;UBERON:0001049!3.69e-11!52;UBERON:0005068!3.69e-11!52;UBERON:0006241!3.69e-11!52;UBERON:0007135!3.69e-11!52;UBERON:0002020!1.08e-09!34;UBERON:0000033!2.70e-09!63;UBERON:0002616!4.06e-09!49;UBERON:0000955!4.21e-09!50;UBERON:0006238!4.21e-09!50;UBERON:0000025!7.26e-09!114;UBERON:0003056!1.37e-08!49;UBERON:0004111!4.96e-08!122;UBERON:0002780!7.37e-08!39;UBERON:0001890!7.37e-08!39;UBERON:0006240!7.37e-08!39;UBERON:0003080!9.49e-08!40;UBERON:0002791!4.23e-07!29;UBERON:0003528!4.23e-07!29;UBERON:0001893!4.23e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.78e-16,92;UBERON:0001017,1.92e-15,73;UBERON:0001016,4.99e-15,75;UBERON:0002346,5.98e-13,64;UBERON:0003075,5.98e-13,64;UBERON:0007284,5.98e-13,64;UBERON:0004121,4.66e-12,95;UBERON:0000924,4.66e-12,95;UBERON:0006601,4.66e-12,95;UBERON:0000073,7.69e-12,54;UBERON:0001049,2.51e-11,52;UBERON:0005068,2.51e-11,52;UBERON:0006241,2.51e-11,52;UBERON:0007135,2.51e-11,52;UBERON:0010371,2.05e-10,73;UBERON:0002020,8.97e-10,34;UBERON:0003056,1.25e-08,49;UBERON:0002616,1.39e-08,46;UBERON:0000955,1.44e-08,47;UBERON:0006238,1.44e-08,47;UBERON:0002780,6.62e-08,39;UBERON:0001890,6.62e-08,39;UBERON:0006240,6.62e-08,39;UBERON:0003080,8.53e-08,40;UBERON:0000025,2.01e-07,114;UBERON:0003528,4.24e-07,29;UBERON:0002791,4.24e-07,29;UBERON:0001893,4.24e-07,29|phase1_expression=4.16387002472464,2.79180326111489,3.18499467572675,0,0.500895729946347,2.35030980676646,0.934450562382103,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,2.55129870453209,0,0,0.319984845586813,0.22940928106717,1.14846392823004,1.7230479846363,2.58565479223067,0.380046838912748,0.756090389279792,1.33038306393183,0,0,0,0.577703239502549,0,0.408338712524738,0,0,0,0,0,0,3.65100772129174,4.35920804243913,5.50640256485045,3.9119567217402,1.30815093828268,1.97717564461025,1.1665793944457,1.39986421625363,0,0,0,0,7.46052364504246,3.72493471920384,9.7977697532714,16.7922662513466,10.5798195854407,8.87363964908651,9.82649143000483,2.66788438833342,1.7997994345628,0,0.7104801149461,2.69640099466564,1.15265491596466,26.5445407509703,19.9808788730902,16.1950220240564,5.99867067247988,5.07997644188711,16.2912762955889,16.2937300731002,12.8690630125403,2.20231761998777,4.72443150915195,3.5329502648936,10.5509030184155,9.69769022185542,13.022834263919,2.79182999001381,3.37657566019008,3.97275444219706,7.36571463684169,8.54230084794618,17.335148461753,1.81742863999642,1.13357340160178,0.869593466105033,0,1.3599426674155,0,0.649776417447669,0.448026887097336,0.140444420131752,5.28333999991979,3.63700406444016,1.41335829804136,0.563373679106722,6.41632387071589,0,0,0.649473123033642,1.01343946190039,0,0.79928715803342,0.258937883647172,1.7813056687779,4.51061849591953,3.04465478312141,2.53677046981664,1.95939432718409,1.41106448562846,1.63366568728578,0.741584903203122,1.44599356919912,0,1.94120219936891,0.662524555381181,0.969750506270444,0,2.34224637609238,5.86450779077674,0.510914110417183,0,0,0,1.79748767285787,0.457500602818626,13.4450156760765,5.04090528557602,3.06858548796397,1.66230435647648,2.75810147215188,4.88828946481518,0.870848794270651,1.0108910337347,0.841767423545896,1.56144531555244,2.98872735763515,4.32149111532838,4.21973489940002,5.03470093719826,5.12454881139399,4.2165776051878,0,0.862271971731369,2.08016688184601,2.28736461413134,2.41115305670332,3.05851974148158,1.74126083261083,1.02891068203972,3.18454826909589,0,0,0,4.97101854085205,3.75241695969754,4.32148947506436,4.97163944728941,4.72234156193769,3.08534225774756,4.18561100550734,5.09719462659276,3.26942958628075,2.46839774870221,3.77585167381919,1.37816976227955,1.46199987425332,0.658650345873152,0.402619256281115,2.73376933133365,11.5253165864799,0,0,3.83918850963421,4.87697010906921,2.06187938115349,1.61346819698674,1.33426826306922,1.14135375667535,0.474529061544512,1.15289268306808,1.25667604400135,2.38747766449381,1.9496408711912,0,1.29682829924817,0.995706366271836,2.46568271239006,2.62771579002376,0,2.44381593414377,1.93952487167626,2.45475369616115,2.08680572510049,0.442830443938806,0.156998727841375,0,0.889357881261447,1.00107063429656,0.589676985339609,1.57403478669398,0.405720242777006,1.20588579876208,1.2731292589071,1.15078454980324,0.486405680325106,1.64736847912849,5.75072826109418,1.11642284300551,3.43241440426017,1.76805214562978,0.179397413521912,0.482443521363367,0.923765950833023,3.60033682363921,2.60743962307241,2.20668611507745,1.17345124144251,0.837531287209079,0.714130922658041,1.56106918286239,1.10344600874334,1.99318220683897,2.55127629851979,0.655453258862952,0.863424909329478,0.867894351489069,0,0,0.491764273019036,1.37968373152366,2.72936002979246,2.81308047821288,4.26230857979356,1.00988370881749,3.47059041357882,2.34263246577983,4.95473814785438,3.34556317133573,2.89638276307112,4.24614796183249,4.04810701674894,4.9683495844923,1.97643888973262,2.24924921495265,1.98716119291576,4.62970569534864,4.56083486190013,3.13443233647817,0,2.6705869977048,1.51161778482376,1.69744571780308,1.18120757152309,1.22974059177571,1.80899805217755,1.09060118843252,0.356497378384721,0.632073515871632,0,1.03135543248187,1.02131881726136,3.24109969256358,3.23396709456886,4.07240366560025,3.72414490648775,1.60531935841864,3.1264313914403,3.04464949114599,2.3467170806371,1.48282449604674,0.441056796109924,1.31909002353184,0.968786560175433,1.99032652262914,1.19372344003136,0.984845398470368,0.291480836629851,2.96680483216816,0.170870880797853,2.88941615148511,0.370389054739423,0.188368457004691,0.136694227721025,0,0,0.139951452323658,0.138199973804424,0,3.00519193902079,2.84647253977588,5.07625101862466,2.92723614420256,3.49380101993884,2.83215127408124,3.80205896336545,2.87931536182433,1.16653475962614,1.24267862617385,0,3.73791365109947,2.81279433777066,5.83353565032143,3.61647505737647,4.39285926276023,3.28600268208111,1.3020438484395,0.943734099831398,0.241584120826006,0.576060012515731,0,1.82452693761148,1.23253148597793,0.389762468933385,0.179026695667481,0.39736270956253,0.360586348559907,0.443068581523732,0.201932899896295,0.533447646584999,0.705783295957884,0.0974578807397524,0.0962118416403295,0.350630706544707,0.453460767230423,0.221985953374065,0,0.503653849092235,2.70465431645067,3.00291960721891,1.83151624267265,1.50057865355346,0.501572104035363,2.25900737046827,4.14292712856459,0.572895513439397,3.78077001156113,2.05524755931193,2.2661816921691,4.72515750162264,1.35096360967266,2.71885445390523,1.03552062350364,3.94391920819871,3.99024873401031,4.26834014385335,3.16038732188782,2.72497111416377,4.59608771125035,0.888986911206461,2.06035057238894,2.56735367673452,3.79045817645696,1.2673964994512,1.88626341386076,2.99652823903624,5.6342134116285,4.99688579913835,2.85776214769844,4.28772005995965,3.08654752741928,1.23625770240992,1.47198920134397,0.685738504770831,3.54951612318675,3.33810665926249,3.48831399917588,2.82328141245992,3.55381353145041,4.024415403201,2.36762740294059,2.58027816307137,2.24456908663095,2.60997039873183,3.64466584789585,2.45538625901814,3.56354734727722,3.2794123866794,6.49507502638659,2.33931608445408,2.79332370262788,1.53030665655075,0.882365676478062,1.62307484934295|short_description=p6@Rbfox2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=93686 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q8BP71 | |||
|association_with_transcript=61bp_to_ENSMUST00000111581,ENSMUST00000166610,NM_001110828,NM_001110829,NM_001110830,uc007wnc.2,uc007wnd.2,uc007wne.2,uc007wnf.2,uc011zvf.1,uc011zvg.1_5end | |||
|cluster_id=chr15:76984156..76984180,- | |||
|description=CAGE_peak_6_at_Rbfox2_5end | |||
|id=chr15:76984156..76984180,- | |||
|ontology_enrichment_celltype=CL:0000393!8.44e-18!39;CL:0000211!8.44e-18!39;CL:0000540!6.00e-15!33;CL:0000047!6.00e-15!33;CL:0000031!6.00e-15!33;CL:0000404!6.00e-15!33;CL:0000055!1.85e-13!50;CL:0000117!6.57e-13!23;CL:0000337!6.57e-13!23;CL:0002319!1.08e-11!43;CL:0000221!4.06e-11!44;CL:0000133!4.06e-11!44;CL:0002321!8.14e-07!70;CL:0000220!8.14e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.74e-18,39;CL:0000211,1.74e-18,39;CL:0000540,1.63e-15,33;CL:0000047,1.63e-15,33;CL:0000031,1.63e-15,33;CL:0000404,1.63e-15,33;CL:0000117,2.18e-13,23;CL:0000337,2.18e-13,23;CL:0002319,2.67e-12,43;CL:0000221,1.52e-11,44;CL:0000133,1.52e-11,44;CL:0002321,7.39e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.83e-15!73;UBERON:0005743!5.83e-15!73;UBERON:0000073!1.47e-14!75;UBERON:0001016!1.47e-14!75;UBERON:0004121!5.02e-13!102;UBERON:0000924!5.02e-13!102;UBERON:0006601!5.02e-13!102;UBERON:0002346!6.02e-13!71;UBERON:0003075!6.02e-13!71;UBERON:0007284!6.02e-13!71;UBERON:0001049!3.69e-11!52;UBERON:0005068!3.69e-11!52;UBERON:0006241!3.69e-11!52;UBERON:0007135!3.69e-11!52;UBERON:0002020!1.08e-09!34;UBERON:0000033!2.70e-09!63;UBERON:0002616!4.06e-09!49;UBERON:0000955!4.21e-09!50;UBERON:0006238!4.21e-09!50;UBERON:0000025!7.26e-09!114;UBERON:0003056!1.37e-08!49;UBERON:0004111!4.96e-08!122;UBERON:0002780!7.37e-08!39;UBERON:0001890!7.37e-08!39;UBERON:0006240!7.37e-08!39;UBERON:0003080!9.49e-08!40;UBERON:0002791!4.23e-07!29;UBERON:0003528!4.23e-07!29;UBERON:0001893!4.23e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.78e-16,92;UBERON:0001017,1.92e-15,73;UBERON:0001016,4.99e-15,75;UBERON:0002346,5.98e-13,64;UBERON:0003075,5.98e-13,64;UBERON:0007284,5.98e-13,64;UBERON:0004121,4.66e-12,95;UBERON:0000924,4.66e-12,95;UBERON:0006601,4.66e-12,95;UBERON:0000073,7.69e-12,54;UBERON:0001049,2.51e-11,52;UBERON:0005068,2.51e-11,52;UBERON:0006241,2.51e-11,52;UBERON:0007135,2.51e-11,52;UBERON:0010371,2.05e-10,73;UBERON:0002020,8.97e-10,34;UBERON:0003056,1.25e-08,49;UBERON:0002616,1.39e-08,46;UBERON:0000955,1.44e-08,47;UBERON:0006238,1.44e-08,47;UBERON:0002780,6.62e-08,39;UBERON:0001890,6.62e-08,39;UBERON:0006240,6.62e-08,39;UBERON:0003080,8.53e-08,40;UBERON:0000025,2.01e-07,114;UBERON:0003528,4.24e-07,29;UBERON:0002791,4.24e-07,29;UBERON:0001893,4.24e-07,29 | |||
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| |||
|short_description=p6@Rbfox2 | |||
}} |
Latest revision as of 01:20, 27 September 2015
Short description: | p6@Rbfox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Rbfox2_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_ENSMUST00000111581, ENSMUST00000166610, NM_001110828, NM_001110829, NM_001110830, uc007wnc.2, uc007wnd.2, uc007wne.2, uc007wnf.2, uc011zvf.1, uc011zvg.1_5end |
EntrezGene: | Rbfox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.74e-18 | 39 |
electrically active cell | 1.74e-18 | 39 |
neuron | 1.63e-15 | 33 |
neuronal stem cell | 1.63e-15 | 33 |
neuroblast | 1.63e-15 | 33 |
electrically signaling cell | 1.63e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.18e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.18e-13 | 23 |
neural cell | 2.67e-12 | 43 |
ectodermal cell | 1.52e-11 | 44 |
neurectodermal cell | 1.52e-11 | 44 |
embryonic cell | 7.39e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.78e-16 | 92 |
central nervous system | 1.92e-15 | 73 |
nervous system | 4.99e-15 | 75 |
neurectoderm | 5.98e-13 | 64 |
neural plate | 5.98e-13 | 64 |
presumptive neural plate | 5.98e-13 | 64 |
ectoderm-derived structure | 4.66e-12 | 95 |
ectoderm | 4.66e-12 | 95 |
presumptive ectoderm | 4.66e-12 | 95 |
regional part of nervous system | 7.69e-12 | 54 |
neural tube | 2.51e-11 | 52 |
neural rod | 2.51e-11 | 52 |
future spinal cord | 2.51e-11 | 52 |
neural keel | 2.51e-11 | 52 |
ecto-epithelium | 2.05e-10 | 73 |
gray matter | 8.97e-10 | 34 |
pre-chordal neural plate | 1.25e-08 | 49 |
regional part of brain | 1.39e-08 | 46 |
brain | 1.44e-08 | 47 |
future brain | 1.44e-08 | 47 |
regional part of forebrain | 6.62e-08 | 39 |
forebrain | 6.62e-08 | 39 |
future forebrain | 6.62e-08 | 39 |
anterior neural tube | 8.53e-08 | 40 |
tube | 2.01e-07 | 114 |
brain grey matter | 4.24e-07 | 29 |
regional part of telencephalon | 4.24e-07 | 29 |
telencephalon | 4.24e-07 | 29 |