FFCP PHASE1:Hg19::chr5:140890849..140890861,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5098 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8716 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BT64 | |||
|association_with_transcript=324bp_to_BC004321_5end | |||
|cluster_id=chr5:140890849..140890861,+ | |||
|description=CAGE_peak_4_at_PCDHGC3_5end | |||
|id=chr5:140890849..140890861,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.89e-18!180;CL:0000057!4.78e-10!75 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.28e-10;9!CL:0000447;3.28e-10;9!CL:0000499;1.42e-07;28!CL:0000138;4.44e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.93e-10,9;CL:0000447,1.93e-10,9;CL:0000499,1.19e-07,28;CL:0000058,2.69e-07,6;CL:0000138,2.69e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.09e-19!82;UBERON:0005743!1.41e-19!86;UBERON:0000073!1.66e-17!94;UBERON:0001016!1.66e-17!94;UBERON:0001049!3.64e-16!57;UBERON:0005068!3.64e-16!57;UBERON:0006241!3.64e-16!57;UBERON:0007135!3.64e-16!57;UBERON:0000955!1.31e-15!69;UBERON:0006238!1.31e-15!69;UBERON:0002616!1.85e-14!59;UBERON:0002346!7.93e-13!90;UBERON:0002020!1.28e-12!34;UBERON:0003528!1.28e-12!34;UBERON:0003080!1.49e-12!42;UBERON:0000924!1.50e-12!173;UBERON:0006601!1.50e-12!173;UBERON:0002780!4.11e-12!41;UBERON:0001890!4.11e-12!41;UBERON:0006240!4.11e-12!41;UBERON:0001893!5.51e-12!34;UBERON:0001869!6.58e-12!32;UBERON:0002791!6.70e-12!33;UBERON:0000033!7.41e-12!123;UBERON:0003075!7.78e-12!86;UBERON:0007284!7.78e-12!86;UBERON:0004121!1.13e-11!169;UBERON:0000475!2.24e-11!365;UBERON:0000153!5.66e-11!129;UBERON:0007811!5.66e-11!129;UBERON:0000956!6.30e-10!25;UBERON:0000203!6.30e-10!25;UBERON:0000119!2.54e-09!312;UBERON:0000483!7.67e-09!309;UBERON:0003056!7.96e-09!61;UBERON:0000025!8.19e-09!194;UBERON:0002619!1.36e-08!22;UBERON:0000477!1.65e-08!286;UBERON:0004111!1.70e-08!241;UBERON:0001950!2.88e-07!20;UBERON:0000468!8.97e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.09e-09;22!UBERON:0002791;9.93e-09;32!UBERON:0001869;2.29e-08;32!UBERON:0000956;2.51e-08;25!UBERON:0000203;2.51e-08;25!UBERON:0003528;9.36e-08;34!UBERON:0002020;9.36e-08;34!UBERON:0001893;2.62e-07;34!UBERON:0001954;8.93e-07;2!UBERON:0003022;8.93e-07;2!UBERON:0002421;8.93e-07;2!UBERON:0002600;8.93e-07;2!UBERON:0001950;9.45e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.34e-09,22;UBERON:0002791,5.47e-09,32;UBERON:0001869,5.47e-09,32;UBERON:0001017,1.15e-08,81;UBERON:0003528,2.55e-08,34;UBERON:0002020,2.55e-08,34;UBERON:0001893,2.55e-08,34;UBERON:0000956,3.01e-08,25;UBERON:0000203,3.01e-08,25;UBERON:0001016,2.50e-07,89;UBERON:0001049,6.90e-07,56;UBERON:0005068,6.90e-07,56;UBERON:0006241,6.90e-07,56;UBERON:0007135,6.90e-07,56;UBERON:0001954,9.83e-07,2;UBERON:0003022,9.83e-07,2;UBERON:0002421,9.83e-07,2;UBERON:0002600,9.83e-07,2 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0,0,0,0,0,0.990130823680373,1.98838425436749,1.34465029290355,1.20538905604795,1.46062018077475,0.487932798790507,0.61560529038394,0.612002073732759,0,0.85870796139317,0.684372125364421,0.627713197974014,0.0764134057479513,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.50668955317945,1.88300474649071,0.795285947051099,1.94653948121054,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.208994966536811,0.258416759169329,0,0,0.805658634218294,0,0.488124115096339,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,1.2663051166458,0.264818361626438,2.0078563452417,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.622422070799533,0.269421344139376,0,0.605429710579726,0.576175924479999,0.234321431833797,0.624320153660641,0,0.597794722207204,0.23486899728753,0.323745888736263,0,0.61246251376468,0.368502951935304,0.619954687054593,2.37600571456411,1.23633464639278,0,0,0.336672227908132,0.125118519871964,0,0,0.919463387397059,1.35214253015937,0.453728732640084,0.89694817844431,0.427114777637135,0.423863802319124,0.900273288253207,0.618315175430633,1.03056216018252,0.37223371266318,1.18143432568886,0.292311015483596,0.252433774244115,0.828449087780694,1.2931684545505,1.06502877754984,0.503760491138201,0.339121184620975,0.193260853163297,0,0.286804595389004,0.121973706129595,0,0,0.310983165046111,0,0,0,1.92972281457866,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0.253991577168676,0.763976851116555,0,3.4214489204541,1.13110241973656,1.20137223137567,0.571652865261156,0.336393253036082,0.43596006883328,0.36669142910475,0.129271715757778,0,0,0.26593811658487,0,0.514414748524284,0,0.266422179016099,0.714889968290738,2.71310802695722,0,0,0.355391948742546,0,0,0,0.199945982364114,0,0,0,0.479249710983165,1.14861935834114,0,0.289562613335158,0.821905290201534,0.358121926479791,0,0,0,0,1.77866236955724,0,1.54657762555539,0.837581326671744,3.18969375826582,0,0,0,2.57652132610194,0.500170521059677,0.813795071099207,0.623912584592421,2.14114786556594,1.10391690523754,0.35142424497814,0.300946099727719,0,0,0,0,0.434418072340414,1.17480694477644,1.71571711905428,0,0,0,0,0,0,0.248107807818777,0.61384789315225,1.68396056659844,0.128139149255701,0,1.60853921143608,2.96836132889982,0.616838775210622,0,0.164254312027618,0.519254429183621,0.348631135379878,0,0,0.460404944679482,0.574072240823034,1.45672934405374,1.18011973463482,0,0.231046011313244,0,0,0,0,0.170093705276516,0.215915916102139,0,0.541892875087706,1.00337954770971,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0.309123034943167,0.0915694648183434,0,0.574265537996172,0,1.6068392984416,0.773365746336976,0.154048617114644,0.15350367472613,0.137836572484531,0.537101224341368,0.145016693914229,0.340906509664404,0.178064071293475,0.165284915360978,0.192190067365106,0.127612712494584,0.2023155617111,1.39453664789186,0.94443704049192,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,0,0.316379424718726,0,0,0.42793898803392,0,0,0.359744915166629,0.823611089208164,0.353437207037059,0,1.58510321173008,0.421258456238981,0,1.46228093778771,0,0,0.989838023675989,0,0,0,0.438450885253763,2.89387767133344,1.31178950409327,0.202910376962704,0,0,0.286822704408103,0.294747123039363,0.7133421029625,0.354761064070598,2.74439925886963,2.30506425071931,0,0.349934720244983,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0.614481528616916,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0.994147647766298,1.26602474769461,0,0,0.422250816255987,0.796991953004279,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0.0898683511473268,0,0,0.0986434056369336,0,0,1.93866549219044,1.02044907978036,3.99227596002388,0,0,0.724999575434793,0.341380344856499,0.254253650292766,0,0,0,0,2.65722415744152,0.723578631752448,0,0.663475559587348,1.18219047581419,0.438770794307945,0,0,0.153900517007594,0.341826167541004,0,0.0897576444097721,0,0,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.337005664903385,0,0.234264445725339,0,0.19566461893209,0,0,0,2.14250933141343,0.252746318513952,0,0,0.664653872707185,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,1.0319161948297,0,0,0,0.193978032976839,0.264768380074501,0.451961481561065,0,0,0.443175571691151,0,0,0,0.199809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| |||
|short_description=p4@PCDHGC3 | |||
}} |
Latest revision as of 04:48, 25 September 2015
Short description: | p4@PCDHGC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PCDHGC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 324bp_to_BC004321_5end |
EntrezGene: | PCDHGC3 |
HGNC: | 8716 |
UniProt: | Q9BT64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.93e-10 | 9 |
carbohydrate secreting cell | 1.93e-10 | 9 |
stromal cell | 1.19e-07 | 28 |
chondroblast | 2.69e-07 | 6 |
chondrocyte | 2.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.34e-09 | 22 |
regional part of telencephalon | 5.47e-09 | 32 |
cerebral hemisphere | 5.47e-09 | 32 |
central nervous system | 1.15e-08 | 81 |
brain grey matter | 2.55e-08 | 34 |
gray matter | 2.55e-08 | 34 |
telencephalon | 2.55e-08 | 34 |
cerebral cortex | 3.01e-08 | 25 |
pallium | 3.01e-08 | 25 |
nervous system | 2.50e-07 | 89 |
neural tube | 6.90e-07 | 56 |
neural rod | 6.90e-07 | 56 |
future spinal cord | 6.90e-07 | 56 |
neural keel | 6.90e-07 | 56 |
Ammon's horn | 9.83e-07 | 2 |
lobe parts of cerebral cortex | 9.83e-07 | 2 |
hippocampal formation | 9.83e-07 | 2 |
limbic lobe | 9.83e-07 | 2 |