FFCP PHASE1:Hg19::chrX:49121165..49121179,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:49121165..49121179,-
|short_description=p1@FOXP3
|description=CAGE_peak_1_at_FOXP3_5end
|association_with_transcript=108bp_to_ENST00000376199,ENST000003762...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50943 | |EntrezGene=50943 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6106 | |HGNC=6106 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BZS1 | |UniProt=Q9BZS1 | ||
|association_with_transcript=108bp_to_ENST00000376199,ENST00000376207,NM_001114377,NM_014009,uc004dne.3,uc004dnf.3_5end | |||
|cluster_id=chrX:49121165..49121179,- | |||
|coexpression_cluster_id=C144 | |||
|description=CAGE_peak_1_at_FOXP3_5end | |||
|id=chrX:49121165..49121179,- | |||
|ontology_enrichment_celltype=CL:0000791!4.28e-23!18;CL:0000789!4.28e-23!18;CL:0002420!4.28e-23!18;CL:0002419!4.28e-23!18;CL:0000790!4.28e-23!18;CL:0000738!5.21e-21!140;CL:0000084!7.83e-17!25;CL:0000827!7.83e-17!25;CL:0002087!9.78e-17!119;CL:0000037!5.22e-14!172;CL:0000566!5.22e-14!172;CL:0000988!9.28e-14!182;CL:0002031!1.93e-13!124;CL:0000625!3.48e-13!11;CL:0002032!3.79e-12!165;CL:0000837!3.79e-12!165;CL:0000624!6.18e-11!6;CL:0000838!5.00e-10!52;CL:0000542!1.02e-09!53;CL:0000051!1.02e-09!53;CL:0000766!2.72e-07!76;CL:0000451!8.57e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.51e-25;18!CL:0000789;3.51e-25;18!CL:0002419;3.51e-25;18!CL:0000624;3.71e-18;6!CL:0000084;3.37e-17;25!CL:0000625;4.03e-12;11!CL:0000898;7.00e-10;3!CL:0000226;3.82e-09;3!CL:0000842;3.82e-09;3!CL:0000623;7.05e-09;3!CL:0002619;2.18e-08;3!CL:0000815;1.99e-07;2!CL:0000792;1.99e-07;2!CL:0002677;1.99e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.93e-25,18;CL:0000789,2.93e-25,18;CL:0002420,2.93e-25,18;CL:0002419,2.93e-25,18;CL:0000790,2.93e-25,18;CL:0000624,3.35e-18,6;CL:0000084,2.97e-17,25;CL:0000827,2.97e-17,25;CL:0000625,3.67e-12,11;CL:0000738,2.06e-11,136;CL:0000838,1.67e-10,52;CL:0000542,3.13e-10,53;CL:0000051,3.13e-10,53;CL:0000898,6.32e-10,3;CL:0002087,1.31e-09,115;CL:0000226,3.66e-09,3;CL:0000842,3.66e-09,3;CL:0000623,5.57e-09,3;CL:0000825,5.57e-09,3;CL:0002619,1.76e-08,3;CL:0000037,7.36e-08,168;CL:0000815,1.99e-07,2;CL:0000792,1.99e-07,2;CL:0002677,1.99e-07,2;CL:0000988,4.14e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.51e-25;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.43e-18!15;UBERON:0000179!1.43e-18!15;UBERON:0000463!1.43e-18!15;UBERON:0002390!4.93e-16!102;UBERON:0003061!4.93e-16!102;UBERON:0002193!1.46e-15!112;UBERON:0007023!2.14e-10!115;UBERON:0004177!4.30e-08!7;UBERON:0003408!6.05e-07!10;UBERON:0001042!6.80e-07!10;UBERON:0009145!6.80e-07!10;UBERON:0002370!7.82e-07!4;UBERON:0005058!7.82e-07!4;UBERON:0009113!7.82e-07!4;UBERON:0003295!7.82e-07!4;UBERON:0005562!7.82e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.70e-24;15!UBERON:0000179;3.70e-24;15!UBERON:0000463;3.70e-24;15!UBERON:0002390;5.58e-17;32!UBERON:0002193;4.34e-12;42!UBERON:0004177;1.35e-09;5!UBERON:0005057;1.35e-09;5!UBERON:0002370;4.03e-07;2!UBERON:0005058;4.03e-07;2!UBERON:0009113;4.03e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.41e-24,15;UBERON:0000179,4.41e-24,15;UBERON:0000463,4.41e-24,15;UBERON:0004177,2.77e-10,7;UBERON:0005057,2.77e-10,7;UBERON:0002193,2.77e-10,108;UBERON:0002390,1.17e-09,98;UBERON:0003061,1.17e-09,98;UBERON:0002370,2.68e-07,4;UBERON:0005058,2.68e-07,4;UBERON:0009113,2.68e-07,4;UBERON:0003295,2.68e-07,4;UBERON:0005562,2.68e-07,4;UBERON:0003408,5.23e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.619264493264304,0,0,0,0,0,0,1.66198622559563,0.601633342410425,1.51907609501096,2.23915474239924,2.91504299417082,1.80302897343931,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,1.29096936716765,0,0.376484679085209,0.272906150057846,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0.199463657621632,0.426224750532694,0.580418477257168,1.70215567407342,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,2.24203425192614,0,13.9663936780821,9.43225830597995,27.1393978679352,283.54829618259,167.849967316299,196.480839379914,142.223511737775,163.104908879894,234.211696442496,247.674894144488,307.362385373293,373.386197000343,397.721484838108,22.6924308353073,6.07970039128866,3.18783394308558,0.444859689486181,0,0,5.43884844948318,3.83220493601921,8.93431358254838,3.54227568827304,5.41561204350964,0.651083453856419,2.85135613334512,9.78738274005523,10.2389288923535,6.24653632761729,7.10331756132051,3.28451198768419,0,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0.324547393654683,0,0.132957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,3.34952292343276,3.88129634747131,2.43851768931522,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78950473144085,2.5885704098234,5.12292277456533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,3.04468565539302,3.0585488285695,2.27858874869665,5.95579438644473,3.70226045777575,3.24236655596359,4.32025149790492,2.37937552888281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.398495976502139,13.2616279454951,0,0,0,0,0,0,0,0.789147245095469,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,1.22206028986725,0,0.617819694732514,0.835375596043643,0.067401132980677,0,0,0,0,0,0.394584402849391,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581934098930517,0,0,0,0,0.0633107959558787,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961086713109252,1.25763444079733,1.24271716604159,13.3964825889227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14346339723327,4.11881004971426,1.14495775979091,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,3.28954660114309,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.385870790539723,0.874238242015829,0,0,0,0,0,0,0,2.6315497034359,5.9301256935691,0,0,0,0,0.730336388246517,2.75237570042724,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,1.27940389140589,0.23806443146374,12.3364817786772,9.74573014444969,0,0,0.202117188958219,0.870866991587845,0.342233301085281,12.5948339137279,2.15166616178029,0,0,0,0,0,0,0.488965776731466,0,0,10.0636896795513,0 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| ||
|short_description=p1@FOXP3 | |||
}} | }} |
Latest revision as of 21:54, 15 September 2015
Short description: | p1@FOXP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FOXP3_5end |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | 108bp_to_ENST00000376199, ENST00000376207, NM_001114377, NM_014009, uc004dne.3, uc004dnf.3_5end |
EntrezGene: | FOXP3 |
HGNC: | 6106 |
UniProt: | Q9BZS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.93e-25 | 18 |
alpha-beta T cell | 2.93e-25 | 18 |
immature T cell | 2.93e-25 | 18 |
mature T cell | 2.93e-25 | 18 |
immature alpha-beta T cell | 2.93e-25 | 18 |
CD4-positive, alpha-beta T cell | 3.35e-18 | 6 |
T cell | 2.97e-17 | 25 |
pro-T cell | 2.97e-17 | 25 |
CD8-positive, alpha-beta T cell | 3.67e-12 | 11 |
leukocyte | 2.06e-11 | 136 |
lymphoid lineage restricted progenitor cell | 1.67e-10 | 52 |
lymphocyte | 3.13e-10 | 53 |
common lymphoid progenitor | 3.13e-10 | 53 |
naive T cell | 6.32e-10 | 3 |
nongranular leukocyte | 1.31e-09 | 115 |
single nucleate cell | 3.66e-09 | 3 |
mononuclear cell | 3.66e-09 | 3 |
natural killer cell | 5.57e-09 | 3 |
pro-NK cell | 5.57e-09 | 3 |
adult endothelial progenitor cell | 1.76e-08 | 3 |
hematopoietic stem cell | 7.36e-08 | 168 |
regulatory T cell | 1.99e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.99e-07 | 2 |
naive regulatory T cell | 1.99e-07 | 2 |
hematopoietic cell | 4.14e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 4.41e-24 | 15 |
haemolymphatic fluid | 4.41e-24 | 15 |
organism substance | 4.41e-24 | 15 |
hemopoietic organ | 2.77e-10 | 7 |
immune organ | 2.77e-10 | 7 |
hemolymphoid system | 2.77e-10 | 108 |
hematopoietic system | 1.17e-09 | 98 |
blood island | 1.17e-09 | 98 |
thymus | 2.68e-07 | 4 |
hemolymphoid system gland | 2.68e-07 | 4 |
thymic region | 2.68e-07 | 4 |
pharyngeal gland | 2.68e-07 | 4 |
thymus primordium | 2.68e-07 | 4 |
gland of gut | 5.23e-07 | 10 |