FFCP PHASE1:Mm9::chr1:181476539..181476564,+: Difference between revisions
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{{FFCP|EntrezGene=226744|HGNC=|MCL_coexpression_id=822|UniProt=Q8CBC4|association_with_transcript=38bp_to_ENSMUST00000040706_5end|description=CAGE_peak_2_at_Cnst_5end|id=chr1:181476539..181476564,+|ontology_enrichment_celltype=CL:0000117!2.29e-12!23;CL:0000337!2.29e-12!23;CL:0000540!4.46e-07!33;CL:0000047!4.46e-07!33;CL:0000031!4.46e-07!33;CL:0000404!4.46e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0000540,4.41e-07,33;CL:0000047,4.41e-07,33;CL:0000031,4.41e-07,33;CL:0000404,4.41e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!7.27e-18!86;UBERON:0000153!4.20e-17!94;UBERON:0001049!1.25e-16!52;UBERON:0005068!1.25e-16!52;UBERON:0006241!1.25e-16!52;UBERON:0007135!1.25e-16!52;UBERON:0000955!3.97e-16!50;UBERON:0006238!3.97e-16!50;UBERON:0002616!1.73e-15!49;UBERON:0002020!9.31e-15!34;UBERON:0000033!1.33e-14!63;UBERON:0003080!4.56e-13!40;UBERON:0001017!5.00e-13!73;UBERON:0005743!5.00e-13!73;UBERON:0002780!1.50e-12!39;UBERON:0001890!1.50e-12!39;UBERON:0006240!1.50e-12!39;UBERON:0002791!2.08e-12!29;UBERON:0003528!2.08e-12!29;UBERON:0001893!2.08e-12!29;UBERON:0003056!2.33e-12!49;UBERON:0002346!2.34e-12!71;UBERON:0003075!2.34e-12!71;UBERON:0007284!2.34e-12!71;UBERON:0000073!4.09e-12!75;UBERON:0001016!4.09e-12!75;UBERON:0004121!6.38e-10!102;UBERON:0000924!6.38e-10!102;UBERON:0006601!6.38e-10!102;UBERON:0000956!4.01e-08!21;UBERON:0001869!4.01e-08!21;UBERON:0000203!4.01e-08!21;UBERON:0000477!1.08e-07!154;UBERON:0000064!7.81e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.80e-18,54;UBERON:0001049,1.35e-16,52;UBERON:0005068,1.35e-16,52;UBERON:0006241,1.35e-16,52;UBERON:0007135,1.35e-16,52;UBERON:0002346,2.79e-15,64;UBERON:0003075,2.79e-15,64;UBERON:0007284,2.79e-15,64;UBERON:0010371,7.58e-15,73;UBERON:0002020,9.05e-15,34;UBERON:0000955,2.73e-14,47;UBERON:0006238,2.73e-14,47;UBERON:0002616,1.13e-13,46;UBERON:0003080,4.45e-13,40;UBERON:0001017,4.90e-13,73;UBERON:0002780,1.47e-12,39;UBERON:0001890,1.47e-12,39;UBERON:0006240,1.47e-12,39;UBERON:0003528,2.04e-12,29;UBERON:0002791,2.04e-12,29;UBERON:0001893,2.04e-12,29;UBERON:0003056,2.28e-12,49;UBERON:0001016,4.01e-12,75;UBERON:0004121,7.42e-12,95;UBERON:0000924,7.42e-12,95;UBERON:0006601,7.42e-12,95;UBERON:0010314,2.12e-09,92;UBERON:0000956,3.96e-08,21;UBERON:0001869,3.96e-08,21;UBERON:0000203,3.96e-08,21;UBERON:0000483,3.41e-07,174|phase1_expression=2.08193501236232,1.39590163055744,2.72999543633722,2.41971369045464,4.00716583957078,1.34303417529512,1.86890112476421,6.32704284863724,1.54867594366833,2.10658073689794,0.34243593645101,0.239316476986009,7.36163138704185,5.85716696207283,1.99865857089398,3.23960427823721,4.89693314689703,4.41647031501533,4.11343300817216,3.39511721438424,2.12608225377674,1.58865521921416,1.04479915655574,1.11994695955385,1.14704640533585,1.14846392823004,1.29228598847722,2.15471232685889,1.33016393619462,3.02436155711917,0.886922042621219,0,0.61506478758457,0,1.44425809875637,1.16364251750945,0.408338712524738,3.34825304589526,3.906676722619,1.0470474879476,3.52938892818609,4.78131839470912,3.39857247121808,1.25896817975577,1.11514624341466,1.46837401729345,0.782391344348039,1.30815093828268,2.41654801007919,2.13872888981712,0.839918529752175,0,2.68452169692378,12.3311564141929,5.37750078627942,0.514518872071894,0.85960031981627,1.03134418455488,6.06949382578793,6.87688273053643,5.70448263155561,0.677689064138264,0,0.449949858640699,1.97773272513395,0,1.79760066311043,0.384218305321555,4.66603255388149,6.88530285491622,6.94072372459561,5.42736870367227,6.84692476950002,6.49201235839256,5.75072826109418,3.67687514644008,7.70811166995721,6.2566795661742,9.67721159514334,6.19865552331911,7.31901148819277,6.25096044668112,7.2587579740359,6.75315132038016,4.73674568108111,4.41942878210502,5.69486723196412,7.64237727883732,1.36307147999731,1.88928900266964,2.89864488701678,1.72084775396277,0.679971333707751,0,0.649776417447669,1.79210754838934,2.80888840263504,1.70430322578058,2.85764605063156,0.70667914902068,2.95771181531029,3.84979432242953,5.09610479413291,7.11066703153331,1.08245520505607,0.506719730950197,0.505524445014783,1.82694207550496,3.36619248741323,1.48442139064825,1.90833859442749,1.52232739156071,2.30615497256059,1.65794904607885,2.82212897125692,1.13099932196708,1.97755974187499,3.18118585223806,5.30766331169925,2.10296904931632,2.20841518460394,2.42437626567611,1.86391761218122,15.517382241612,8.79676168616511,2.04365644166873,0.838705871541442,0,1.65191295194984,6.44099749440738,14.640019290196,8.29318723944905,6.08385120672968,6.13717097592793,7.89594569326328,6.81413304884582,2.64782346010822,2.23932547098167,1.0108910337347,5.05060454127538,1.43132487258974,1.83921683546778,2.70093194708024,2.41127708537144,3.12967896096108,2.562274405697,3.65436725782942,6.46758426847539,3.01795190105979,2.26927296201383,1.58356011747554,1.97276159184817,2.22437799380478,3.48252166522167,2.88094990971121,1.99034266818493,2.1066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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=226744 | |||
|HGNC= | |||
|MCL_coexpression_id=822 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CBC4 | |||
|association_with_transcript=38bp_to_ENSMUST00000040706_5end | |||
|cluster_id=chr1:181476539..181476564,+ | |||
|description=CAGE_peak_2_at_Cnst_5end | |||
|id=chr1:181476539..181476564,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.29e-12!23;CL:0000337!2.29e-12!23;CL:0000540!4.46e-07!33;CL:0000047!4.46e-07!33;CL:0000031!4.46e-07!33;CL:0000404!4.46e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0000540,4.41e-07,33;CL:0000047,4.41e-07,33;CL:0000031,4.41e-07,33;CL:0000404,4.41e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!7.27e-18!86;UBERON:0000153!4.20e-17!94;UBERON:0001049!1.25e-16!52;UBERON:0005068!1.25e-16!52;UBERON:0006241!1.25e-16!52;UBERON:0007135!1.25e-16!52;UBERON:0000955!3.97e-16!50;UBERON:0006238!3.97e-16!50;UBERON:0002616!1.73e-15!49;UBERON:0002020!9.31e-15!34;UBERON:0000033!1.33e-14!63;UBERON:0003080!4.56e-13!40;UBERON:0001017!5.00e-13!73;UBERON:0005743!5.00e-13!73;UBERON:0002780!1.50e-12!39;UBERON:0001890!1.50e-12!39;UBERON:0006240!1.50e-12!39;UBERON:0002791!2.08e-12!29;UBERON:0003528!2.08e-12!29;UBERON:0001893!2.08e-12!29;UBERON:0003056!2.33e-12!49;UBERON:0002346!2.34e-12!71;UBERON:0003075!2.34e-12!71;UBERON:0007284!2.34e-12!71;UBERON:0000073!4.09e-12!75;UBERON:0001016!4.09e-12!75;UBERON:0004121!6.38e-10!102;UBERON:0000924!6.38e-10!102;UBERON:0006601!6.38e-10!102;UBERON:0000956!4.01e-08!21;UBERON:0001869!4.01e-08!21;UBERON:0000203!4.01e-08!21;UBERON:0000477!1.08e-07!154;UBERON:0000064!7.81e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.80e-18,54;UBERON:0001049,1.35e-16,52;UBERON:0005068,1.35e-16,52;UBERON:0006241,1.35e-16,52;UBERON:0007135,1.35e-16,52;UBERON:0002346,2.79e-15,64;UBERON:0003075,2.79e-15,64;UBERON:0007284,2.79e-15,64;UBERON:0010371,7.58e-15,73;UBERON:0002020,9.05e-15,34;UBERON:0000955,2.73e-14,47;UBERON:0006238,2.73e-14,47;UBERON:0002616,1.13e-13,46;UBERON:0003080,4.45e-13,40;UBERON:0001017,4.90e-13,73;UBERON:0002780,1.47e-12,39;UBERON:0001890,1.47e-12,39;UBERON:0006240,1.47e-12,39;UBERON:0003528,2.04e-12,29;UBERON:0002791,2.04e-12,29;UBERON:0001893,2.04e-12,29;UBERON:0003056,2.28e-12,49;UBERON:0001016,4.01e-12,75;UBERON:0004121,7.42e-12,95;UBERON:0000924,7.42e-12,95;UBERON:0006601,7.42e-12,95;UBERON:0010314,2.12e-09,92;UBERON:0000956,3.96e-08,21;UBERON:0001869,3.96e-08,21;UBERON:0000203,3.96e-08,21;UBERON:0000483,3.41e-07,174 | |||
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| |||
|short_description=p2@Cnst | |||
}} |
Latest revision as of 21:49, 26 September 2015
Short description: | p2@Cnst |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cnst_5end |
Coexpression cluster: | MCL_coexpression_mm9:822 |
Association with transcript: | 38bp_to_ENSMUST00000040706_5end |
EntrezGene: | Cnst |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-12 | 23 |
neuron | 4.41e-07 | 33 |
neuronal stem cell | 4.41e-07 | 33 |
neuroblast | 4.41e-07 | 33 |
electrically signaling cell | 4.41e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.80e-18 | 54 |
neural tube | 1.35e-16 | 52 |
neural rod | 1.35e-16 | 52 |
future spinal cord | 1.35e-16 | 52 |
neural keel | 1.35e-16 | 52 |
neurectoderm | 2.79e-15 | 64 |
neural plate | 2.79e-15 | 64 |
presumptive neural plate | 2.79e-15 | 64 |
ecto-epithelium | 7.58e-15 | 73 |
gray matter | 9.05e-15 | 34 |
brain | 2.73e-14 | 47 |
future brain | 2.73e-14 | 47 |
regional part of brain | 1.13e-13 | 46 |
anterior neural tube | 4.45e-13 | 40 |
central nervous system | 4.90e-13 | 73 |
regional part of forebrain | 1.47e-12 | 39 |
forebrain | 1.47e-12 | 39 |
future forebrain | 1.47e-12 | 39 |
brain grey matter | 2.04e-12 | 29 |
regional part of telencephalon | 2.04e-12 | 29 |
telencephalon | 2.04e-12 | 29 |
pre-chordal neural plate | 2.28e-12 | 49 |
nervous system | 4.01e-12 | 75 |
ectoderm-derived structure | 7.42e-12 | 95 |
ectoderm | 7.42e-12 | 95 |
presumptive ectoderm | 7.42e-12 | 95 |
structure with developmental contribution from neural crest | 2.12e-09 | 92 |
cerebral cortex | 3.96e-08 | 21 |
cerebral hemisphere | 3.96e-08 | 21 |
pallium | 3.96e-08 | 21 |
epithelium | 3.41e-07 | 174 |