FFCP PHASE1:Hg19::chr6:42883784..42883804,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=171558 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21290 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000418903_5end | |||
|cluster_id=chr6:42883784..42883804,+ | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_1_at_PTCRA_5end | |||
|id=chr6:42883784..42883804,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.43e-12!140;CL:0000784!2.38e-11!3;CL:0000767!1.63e-10!3;CL:0000842!1.80e-10!3;CL:0000037!2.24e-10!172;CL:0000566!2.24e-10!172;CL:0000988!2.16e-09!182;CL:0002087!9.38e-09!119;CL:0000542!3.66e-08!53;CL:0000051!3.66e-08!53;CL:0000224!6.05e-08!4;CL:0000838!4.00e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000784;7.81e-28;3!CL:0000767;2.00e-12;3!CL:0000226;2.38e-12;3!CL:0000842;2.38e-12;3!CL:0000817;3.40e-10;1!CL:0000946;5.30e-10;1!CL:0000786;5.30e-10;1!CL:0000451;5.53e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,7.81e-28,3;CL:0000817,1.12e-12,3;CL:0000767,1.68e-12,3;CL:0000226,2.52e-12,3;CL:0000842,2.52e-12,3;CL:0000946,4.44e-10,1;CL:0000786,4.44e-10,1;CL:0000980,4.44e-10,1;CL:0000451,5.53e-08,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.64e-11!7;UBERON:0000974!5.67e-08!10;UBERON:0002370!5.77e-08!4;UBERON:0005058!5.77e-08!4;UBERON:0009113!5.77e-08!4;UBERON:0003295!5.77e-08!4;UBERON:0005562!5.77e-08!4;UBERON:0000341!1.56e-07!2;UBERON:0000178!4.56e-07!15;UBERON:0000179!4.56e-07!15;UBERON:0000463!4.56e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.91e-19;2!UBERON:0005058;4.91e-19;2!UBERON:0009113;4.91e-19;2!UBERON:0004177;1.79e-16;5!UBERON:0005057;1.79e-16;5!UBERON:0002171;5.30e-10;1!UBERON:0006518;5.30e-10;1!UBERON:0008949;5.30e-10;1!UBERON:0000101;5.30e-10;1!UBERON:0002167;5.30e-10;1!UBERON:0002372;8.99e-10;1!UBERON:0002426;8.99e-10;1!UBERON:0003831;8.99e-10;1!UBERON:0003898;8.99e-10;1!UBERON:0004830;8.99e-10;1!UBERON:0001961;8.99e-10;1!UBERON:0001744;8.99e-10;1!UBERON:0003830;8.99e-10;1!UBERON:0005175;8.99e-10;1!UBERON:0001774;8.99e-10;1!UBERON:0001103;8.99e-10;1!UBERON:0001042;8.99e-10;1!UBERON:0001735;8.99e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,5.83e-12,7;UBERON:0005057,5.83e-12,7;UBERON:0002171,5.30e-10,1;UBERON:0006518,5.30e-10,1;UBERON:0008949,5.30e-10,1;UBERON:0000101,5.30e-10,1;UBERON:0002167,5.30e-10,1;UBERON:0002370,5.55e-10,4;UBERON:0005058,5.55e-10,4;UBERON:0009113,5.55e-10,4;UBERON:0003295,5.55e-10,4;UBERON:0005562,5.55e-10,4;UBERON:0002426,8.99e-10,1;UBERON:0003831,8.99e-10,1;UBERON:0003898,8.99e-10,1;UBERON:0004830,8.99e-10,1;UBERON:0003830,8.99e-10,1;UBERON:0005175,8.99e-10,1;UBERON:0001774,8.99e-10,1;UBERON:0001103,8.99e-10,1;UBERON:0010084,8.99e-10,1;UBERON:0002372,9.82e-10,1;UBERON:0001961,9.82e-10,1;UBERON:0001744,9.82e-10,1;UBERON:0001735,9.82e-10,1;UBERON:0000974,1.30e-08,10;UBERON:0001042,1.72e-08,10;UBERON:0009145,1.72e-08,10;UBERON:0006562,9.25e-08,11;UBERON:0003351,6.27e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.91914699048606,4.33485145285013,0,0,0,0.697204805222715,0,0.293600439334847,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0,0.425208599930087,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,1.04535523804977,0,0,0,0,0.637130828648193,0,0,0.451725357233318,0.383959833463255,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,238.967605553953,247.673796367795,177.928143136862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5243634502453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06768026122887,0.431428401637234,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0,0,0,0,0,0,0.371606350251437,7.93480671370447,90.9192757992732,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,1.60515529459758,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,2.48543433208317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99608367645026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0.874238242015829,0,0,0,0.196308467114945,0,0,0,0.187967835959707,1.86927875123374,0,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,5.95161078659351,191.570706573594,101.492157873728,0,0,0.202117188958219,0,0,1.54909721933551,0,0,0,0,0,0,0,0,0,0,32.0025331809732,0 | |||
|short_description=p1@PTCRA | |||
}} |
Latest revision as of 20:47, 18 September 2015
Short description: | p1@PTCRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTCRA_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 0bp_to_ENST00000418903_5end |
EntrezGene: | PTCRA |
HGNC: | 21290 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 7.81e-28 | 3 |
precursor B cell | 1.12e-12 | 3 |
basophil | 1.68e-12 | 3 |
single nucleate cell | 2.52e-12 | 3 |
mononuclear cell | 2.52e-12 | 3 |
antibody secreting cell | 4.44e-10 | 1 |
plasma cell | 4.44e-10 | 1 |
plasmablast | 4.44e-10 | 1 |
dendritic cell | 5.53e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 5.83e-12 | 7 |
immune organ | 5.83e-12 | 7 |
lower lobe of right lung | 5.30e-10 | 1 |
right lung lobe | 5.30e-10 | 1 |
lower lobe of lung | 5.30e-10 | 1 |
lobe of lung | 5.30e-10 | 1 |
right lung | 5.30e-10 | 1 |
thymus | 5.55e-10 | 4 |
hemolymphoid system gland | 5.55e-10 | 4 |
thymic region | 5.55e-10 | 4 |
pharyngeal gland | 5.55e-10 | 4 |
thymus primordium | 5.55e-10 | 4 |
chest muscle | 8.99e-10 | 1 |
respiratory system muscle | 8.99e-10 | 1 |
skeletal muscle of trunk | 8.99e-10 | 1 |
respiratory system skeletal muscle | 8.99e-10 | 1 |
thoracic segment muscle | 8.99e-10 | 1 |
chest organ | 8.99e-10 | 1 |
muscle of trunk | 8.99e-10 | 1 |
diaphragm | 8.99e-10 | 1 |
future diaphragm | 8.99e-10 | 1 |
tonsil | 9.82e-10 | 1 |
mucosa-associated lymphoid tissue | 9.82e-10 | 1 |
lymphoid tissue | 9.82e-10 | 1 |
tonsillar ring | 9.82e-10 | 1 |
neck | 1.30e-08 | 10 |
chordate pharynx | 1.72e-08 | 10 |
pharyngeal region of foregut | 1.72e-08 | 10 |
pharynx | 9.25e-08 | 11 |
pharyngeal epithelium | 6.27e-07 | 6 |