FFCP PHASE1:Mm9::chr3:89049081..89049115,-: Difference between revisions
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{{FFCP|EntrezGene=360213|HGNC=|MCL_coexpression_id=13|UniProt=Q3TC52|association_with_transcript=5bp_to_ENSMUST00000090924,NM_001039466,uc008pyj.1_5end|description=CAGE_peak_2_at_Trim46_5end|id=chr3:89049081..89049115,-|ontology_enrichment_celltype=CL:0000540!7.06e-17!33;CL:0000047!7.06e-17!33;CL:0000031!7.06e-17!33;CL:0000404!7.06e-17!33;CL:0000221!2.15e-16!44;CL:0000133!2.15e-16!44;CL:0002319!3.11e-16!43;CL:0000393!1.74e-14!39;CL:0000211!1.74e-14!39;CL:0000117!1.14e-13!23;CL:0000337!1.14e-13!23;CL:0000055!1.55e-13!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.58e-19,33;CL:0000047,5.58e-19,33;CL:0000031,5.58e-19,33;CL:0000404,5.58e-19,33;CL:0000221,4.78e-18,44;CL:0000133,4.78e-18,44;CL:0002319,7.32e-18,43;CL:0000393,2.61e-16,39;CL:0000211,2.61e-16,39;CL:0000117,2.50e-15,23;CL:0000337,2.50e-15,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.11e-36!73;UBERON:0005743!1.11e-36!73;UBERON:0000073!7.79e-36!75;UBERON:0001016!7.79e-36!75;UBERON:0002346!3.25e-28!71;UBERON:0003075!3.25e-28!71;UBERON:0007284!3.25e-28!71;UBERON:0004121!4.28e-28!102;UBERON:0000924!4.28e-28!102;UBERON:0006601!4.28e-28!102;UBERON:0001049!6.33e-28!52;UBERON:0005068!6.33e-28!52;UBERON:0006241!6.33e-28!52;UBERON:0007135!6.33e-28!52;UBERON:0000955!2.16e-27!50;UBERON:0006238!2.16e-27!50;UBERON:0000033!1.18e-26!63;UBERON:0002616!1.26e-26!49;UBERON:0003056!7.27e-23!49;UBERON:0003080!1.40e-22!40;UBERON:0002780!5.14e-22!39;UBERON:0001890!5.14e-22!39;UBERON:0006240!5.14e-22!39;UBERON:0000153!1.66e-21!94;UBERON:0007811!3.70e-20!86;UBERON:0002020!1.99e-19!34;UBERON:0002791!3.41e-17!29;UBERON:0003528!3.41e-17!29;UBERON:0001893!3.41e-17!29;UBERON:0000956!1.48e-12!21;UBERON:0001869!1.48e-12!21;UBERON:0000203!1.48e-12!21;UBERON:0002619!4.22e-10!17;UBERON:0002021!6.61e-07!10;UBERON:0000411!6.61e-07!10;UBERON:0001950!6.61e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.79e-41,73;UBERON:0001016,4.27e-40,75;UBERON:0002346,1.39e-33,64;UBERON:0003075,1.39e-33,64;UBERON:0007284,1.39e-33,64;UBERON:0000073,6.03e-33,54;UBERON:0004121,7.67e-33,95;UBERON:0000924,7.67e-33,95;UBERON:0006601,7.67e-33,95;UBERON:0001049,1.48e-31,52;UBERON:0005068,1.48e-31,52;UBERON:0006241,1.48e-31,52;UBERON:0007135,1.48e-31,52;UBERON:0000955,3.60e-29,47;UBERON:0006238,3.60e-29,47;UBERON:0002616,2.61e-28,46;UBERON:0010371,2.25e-27,73;UBERON:0003056,8.55e-26,49;UBERON:0003080,1.80e-25,40;UBERON:0002780,7.92e-25,39;UBERON:0001890,7.92e-25,39;UBERON:0006240,7.92e-25,39;UBERON:0002020,6.99e-22,34;UBERON:0010314,4.18e-20,92;UBERON:0003528,2.44e-19,29;UBERON:0002791,2.44e-19,29;UBERON:0001893,2.44e-19,29;UBERON:0000956,4.61e-14,21;UBERON:0001869,4.61e-14,21;UBERON:0000203,4.61e-14,21;UBERON:0002619,2.84e-11,17;UBERON:0002021,1.21e-07,10;UBERON:0000411,1.21e-07,10;UBERON:0001950,1.21e-07,10|phase1_expression=2.24208385946712,0,0,0,0,0.503637815735669,0.233612640595526,2.32421982194837,0,0.468129052643987,0.171217968225505,0.0797721589953364,0.684802919724823,1.39872643870396,0.333109761815663,0.607425802169478,0,1.26184866143295,0.959801035240171,0.84877930359606,2.29616883407888,2.87943758482567,3.13439746966722,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0.485510353031154,1.00717454380462,0.506884656097573,1.28482726513177,1.56478268869608,3.2703773457067,3.29529274101708,1.94429899074283,0.55994568650145,1.43752564364972,0.503347818173209,0,0,0,2.0057340795713,2.06268836910977,18.2084814773638,22.2176211294254,16.4796164911607,0,0,0.449949858640699,0.988866362566974,1.4209602298922,2.99600110518405,4.99483796918021,17.6272340924412,21.4659441947388,17.0363218694619,9.14083150092171,5.52171352379034,23.3957426500562,29.9037869576897,31.2534387447407,9.91042928994498,10.5980490610706,6.75868746327471,21.101806036831,15.8273623432169,16.6692278578163,8.37548997004143,8.4414391504752,9.0150966188318,7.36571463684169,5.41012387036591,13.4207600994216,0.302904773332736,2.11600368298999,1.15945795480671,0,0,0,0.649776417447669,0,0.983110940922263,1.02258193546835,1.29893002301434,0.70667914902068,2.67602497575693,0,0,0,0,0.253359865475099,0,0.5709193985953,1.55362730188303,0.742210695324124,2.25530924795977,1.82679286987285,1.61430848079241,1.3565037649736,1.41106448562846,0.376999773989026,0,0.144599356919912,0.884610551949874,0.485300549842228,0.662524555381181,0.969750506270444,0,23.7152445579353,21.154117388159,0,0.239630249011841,0,0,12.1330417917906,27.4500361691176,37.068033873295,14.4274185759589,15.0872119824895,11.0127663616567,16.3863675698435,0.509196819251581,0.870848794270651,0,1.68353484709179,1.56144531555244,2.98872735763515,1.0803727788321,2.56198190320716,3.26575195926374,2.17793324484245,3.93547243150861,2.58703370739016,2.80238390812695,4.34943984385984,4.39877810409872,3.72632745126877,2.78047249225598,2.089512999133,0.411564272815887,0.995171334092466,0,0,0,1.24275463521301,0.469052119962192,0.180062061461015,0.710234206755631,0.196764231747404,0.154267112887378,0,0,0,0,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=360213 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TC52 | |||
|association_with_transcript=5bp_to_ENSMUST00000090924,NM_001039466,uc008pyj.1_5end | |||
|cluster_id=chr3:89049081..89049115,- | |||
|description=CAGE_peak_2_at_Trim46_5end | |||
|id=chr3:89049081..89049115,- | |||
|ontology_enrichment_celltype=CL:0000540!7.06e-17!33;CL:0000047!7.06e-17!33;CL:0000031!7.06e-17!33;CL:0000404!7.06e-17!33;CL:0000221!2.15e-16!44;CL:0000133!2.15e-16!44;CL:0002319!3.11e-16!43;CL:0000393!1.74e-14!39;CL:0000211!1.74e-14!39;CL:0000117!1.14e-13!23;CL:0000337!1.14e-13!23;CL:0000055!1.55e-13!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.58e-19,33;CL:0000047,5.58e-19,33;CL:0000031,5.58e-19,33;CL:0000404,5.58e-19,33;CL:0000221,4.78e-18,44;CL:0000133,4.78e-18,44;CL:0002319,7.32e-18,43;CL:0000393,2.61e-16,39;CL:0000211,2.61e-16,39;CL:0000117,2.50e-15,23;CL:0000337,2.50e-15,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.11e-36!73;UBERON:0005743!1.11e-36!73;UBERON:0000073!7.79e-36!75;UBERON:0001016!7.79e-36!75;UBERON:0002346!3.25e-28!71;UBERON:0003075!3.25e-28!71;UBERON:0007284!3.25e-28!71;UBERON:0004121!4.28e-28!102;UBERON:0000924!4.28e-28!102;UBERON:0006601!4.28e-28!102;UBERON:0001049!6.33e-28!52;UBERON:0005068!6.33e-28!52;UBERON:0006241!6.33e-28!52;UBERON:0007135!6.33e-28!52;UBERON:0000955!2.16e-27!50;UBERON:0006238!2.16e-27!50;UBERON:0000033!1.18e-26!63;UBERON:0002616!1.26e-26!49;UBERON:0003056!7.27e-23!49;UBERON:0003080!1.40e-22!40;UBERON:0002780!5.14e-22!39;UBERON:0001890!5.14e-22!39;UBERON:0006240!5.14e-22!39;UBERON:0000153!1.66e-21!94;UBERON:0007811!3.70e-20!86;UBERON:0002020!1.99e-19!34;UBERON:0002791!3.41e-17!29;UBERON:0003528!3.41e-17!29;UBERON:0001893!3.41e-17!29;UBERON:0000956!1.48e-12!21;UBERON:0001869!1.48e-12!21;UBERON:0000203!1.48e-12!21;UBERON:0002619!4.22e-10!17;UBERON:0002021!6.61e-07!10;UBERON:0000411!6.61e-07!10;UBERON:0001950!6.61e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.79e-41,73;UBERON:0001016,4.27e-40,75;UBERON:0002346,1.39e-33,64;UBERON:0003075,1.39e-33,64;UBERON:0007284,1.39e-33,64;UBERON:0000073,6.03e-33,54;UBERON:0004121,7.67e-33,95;UBERON:0000924,7.67e-33,95;UBERON:0006601,7.67e-33,95;UBERON:0001049,1.48e-31,52;UBERON:0005068,1.48e-31,52;UBERON:0006241,1.48e-31,52;UBERON:0007135,1.48e-31,52;UBERON:0000955,3.60e-29,47;UBERON:0006238,3.60e-29,47;UBERON:0002616,2.61e-28,46;UBERON:0010371,2.25e-27,73;UBERON:0003056,8.55e-26,49;UBERON:0003080,1.80e-25,40;UBERON:0002780,7.92e-25,39;UBERON:0001890,7.92e-25,39;UBERON:0006240,7.92e-25,39;UBERON:0002020,6.99e-22,34;UBERON:0010314,4.18e-20,92;UBERON:0003528,2.44e-19,29;UBERON:0002791,2.44e-19,29;UBERON:0001893,2.44e-19,29;UBERON:0000956,4.61e-14,21;UBERON:0001869,4.61e-14,21;UBERON:0000203,4.61e-14,21;UBERON:0002619,2.84e-11,17;UBERON:0002021,1.21e-07,10;UBERON:0000411,1.21e-07,10;UBERON:0001950,1.21e-07,10 | |||
|phase1_expression=2.24208385946712,0,0,0,0,0.503637815735669,0.233612640595526,2.32421982194837,0,0.468129052643987,0.171217968225505,0.0797721589953364,0.684802919724823,1.39872643870396,0.333109761815663,0.607425802169478,0,1.26184866143295,0.959801035240171,0.84877930359606,2.29616883407888,2.87943758482567,3.13439746966722,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0.485510353031154,1.00717454380462,0.506884656097573,1.28482726513177,1.56478268869608,3.2703773457067,3.29529274101708,1.94429899074283,0.55994568650145,1.43752564364972,0.503347818173209,0,0,0,2.0057340795713,2.06268836910977,18.2084814773638,22.2176211294254,16.4796164911607,0,0,0.449949858640699,0.988866362566974,1.4209602298922,2.99600110518405,4.99483796918021,17.6272340924412,21.4659441947388,17.0363218694619,9.14083150092171,5.52171352379034,23.3957426500562,29.9037869576897,31.2534387447407,9.91042928994498,10.5980490610706,6.75868746327471,21.101806036831,15.8273623432169,16.6692278578163,8.37548997004143,8.4414391504752,9.0150966188318,7.36571463684169,5.41012387036591,13.4207600994216,0.302904773332736,2.11600368298999,1.15945795480671,0,0,0,0.649776417447669,0,0.983110940922263,1.02258193546835,1.29893002301434,0.70667914902068,2.67602497575693,0,0,0,0,0.253359865475099,0,0.5709193985953,1.55362730188303,0.742210695324124,2.25530924795977,1.82679286987285,1.61430848079241,1.3565037649736,1.41106448562846,0.376999773989026,0,0.144599356919912,0.884610551949874,0.485300549842228,0.662524555381181,0.969750506270444,0,23.7152445579353,21.154117388159,0,0.239630249011841,0,0,12.1330417917906,27.4500361691176,37.068033873295,14.4274185759589,15.0872119824895,11.0127663616567,16.3863675698435,0.509196819251581,0.870848794270651,0,1.68353484709179,1.56144531555244,2.98872735763515,1.0803727788321,2.56198190320716,3.26575195926374,2.17793324484245,3.93547243150861,2.58703370739016,2.80238390812695,4.34943984385984,4.39877810409872,3.72632745126877,2.78047249225598,2.089512999133,0.411564272815887,0.995171334092466,0,0,0,1.24275463521301,0.469052119962192,0.180062061461015,0.710234206755631,0.196764231747404,0.154267112887378,0,0,0,0,0.164167464079095,0.162137619091711,0,0,0,11.7762371195911,20.4780178634776,0,0.793351699990633,1.49301775374664,1.62565670302307,1.03093969057675,1.4117846723634,0.444756087689741,0.570676878337677,0.474529061544512,0.658795818896044,0.502670417600539,0.596869416123452,0.779856348476481,0,0.216138049874694,0,2.65535061334314,2.17072173958485,3.38123207019241,2.03651327845314,0.969762435838129,1.26244475802573,1.01178459398812,0.885660887877613,0.784993639206874,0.493588655687202,0,0.500535317148282,0,0,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0.505157755894224,0,0,0.554259570499814,0.947457058852424,2.44447464663039,2.8856664581782,3.52035372432753,1.34005005953453,0.476087281772027,0.585400943573396,0.630540576424764,1.10732344824387,1.11618338060241,0.983179888294428,0.690739927463582,0.433947175744535,0,0,0,0.275936746304732,7.54587772942622,9.25972324078405,1.63934945376675,0,4.41711507182759,5.85658116444958,3.87762115919038,4.77937595905104,5.12436950389506,4.81230102341015,4.04810701674894,8.76767573733936,11.0680577825027,22.4924921495265,0.851640511249612,1.42452482933804,0.488660878060728,1.31976098378028,0,1.21390318077491,2.11626489875326,1.13163047853539,1.18120757152309,0.922305443831782,2.32585463851399,0.727067458955011,2.13898427030833,0.316036757935816,0,0,14.9793426531667,3.96134406868882,4.91562998374467,7.07312215604255,12.5911565886014,8.56170324489939,8.72109809191241,9.43841342255258,0.23467170806371,0.21183207086382,0,0,0.161464426695906,0.301564624640779,0.358117032009409,0,0,4.45020724825223,0.683483523191411,0.82554747185289,0.185194527369712,0.188368457004691,0.410082683163076,0.686334519619568,0.849892149969277,0.419854356970974,0.276399947608848,0,1.73984796469624,1.82987520414164,1.18805874903981,0.627264888043406,0.655087691238533,0.539457385539283,0.41326727862668,0,0,0.621339313086926,0.56369293868419,1.04661582230785,0.827292452285488,1.16670713006429,0.774958940866387,0.337912250981556,0,0.651021924219751,0.314578033277133,0,0.288030006257865,3.47612232690996,0.405450430580328,1.23253148597793,1.68897069871134,1.9692936523423,1.39076948346885,0.961563596159751,1.9199638532695,2.42319479875554,1.143102099825,1.41156659191577,1.55932609183604,2.5977197242889,3.27255326108393,0.226730383615211,0,0.0897138566094757,0,0.386379188064381,1.12609485270709,0.549454872801795,0.428736758158132,0,18.0720589637461,15.651058041244,14.3223878359849,12.2015759464018,12.3314853558716,18.8848474347425,15.5255175053315,12.158672487054,12.6879874515577,11.39072685854,2.38710899443606,8.77854721482268,7.68301225893604,5.59145449257076,4.82110274044359,1.47074806760011,1.77797382241292,3.7086310303001,2.56735367673452,3.53776096469316,2.78827229879264,2.45214243801899,2.90288673156635,2.4969809437899,2.87177344778066,4.76293691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| |||
|short_description=p2@Trim46 | |||
}} |
Latest revision as of 20:27, 25 September 2015
Short description: | p2@Trim46 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trim46_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 5bp_to_ENSMUST00000090924, NM_001039466, uc008pyj.1_5end |
EntrezGene: | Trim46 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.58e-19 | 33 |
neuronal stem cell | 5.58e-19 | 33 |
neuroblast | 5.58e-19 | 33 |
electrically signaling cell | 5.58e-19 | 33 |
ectodermal cell | 4.78e-18 | 44 |
neurectodermal cell | 4.78e-18 | 44 |
neural cell | 7.32e-18 | 43 |
electrically responsive cell | 2.61e-16 | 39 |
electrically active cell | 2.61e-16 | 39 |
CNS neuron (sensu Vertebrata) | 2.50e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.50e-15 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.79e-41 | 73 |
nervous system | 4.27e-40 | 75 |
neurectoderm | 1.39e-33 | 64 |
neural plate | 1.39e-33 | 64 |
presumptive neural plate | 1.39e-33 | 64 |
regional part of nervous system | 6.03e-33 | 54 |
ectoderm-derived structure | 7.67e-33 | 95 |
ectoderm | 7.67e-33 | 95 |
presumptive ectoderm | 7.67e-33 | 95 |
neural tube | 1.48e-31 | 52 |
neural rod | 1.48e-31 | 52 |
future spinal cord | 1.48e-31 | 52 |
neural keel | 1.48e-31 | 52 |
brain | 3.60e-29 | 47 |
future brain | 3.60e-29 | 47 |
regional part of brain | 2.61e-28 | 46 |
ecto-epithelium | 2.25e-27 | 73 |
pre-chordal neural plate | 8.55e-26 | 49 |
anterior neural tube | 1.80e-25 | 40 |
regional part of forebrain | 7.92e-25 | 39 |
forebrain | 7.92e-25 | 39 |
future forebrain | 7.92e-25 | 39 |
gray matter | 6.99e-22 | 34 |
structure with developmental contribution from neural crest | 4.18e-20 | 92 |
brain grey matter | 2.44e-19 | 29 |
regional part of telencephalon | 2.44e-19 | 29 |
telencephalon | 2.44e-19 | 29 |
cerebral cortex | 4.61e-14 | 21 |
cerebral hemisphere | 4.61e-14 | 21 |
pallium | 4.61e-14 | 21 |
regional part of cerebral cortex | 2.84e-11 | 17 |
occipital lobe | 1.21e-07 | 10 |
visual cortex | 1.21e-07 | 10 |
neocortex | 1.21e-07 | 10 |