FFCP PHASE1:Hg19::chr8:145086391..145086402,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375686 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30510 | |||
|TSSclassifier=strong | |||
|UniProt=Q76KD6,B4DWW9 | |||
|association_with_transcript=-179bp_to_ENST00000377470,NM_001134374,NM_198572,uc011lkw.1,uc011lkx.1_5end | |||
|cluster_id=chr8:145086391..145086402,+ | |||
|description=CAGE_peak_4_at_SPATC1_5end | |||
|id=chr8:145086391..145086402,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.83e-34!182;CL:0000037!8.35e-33!172;CL:0000566!8.35e-33!172;CL:0002032!4.48e-32!165;CL:0000837!4.48e-32!165;CL:0000738!7.92e-30!140;CL:0002031!4.81e-25!124;CL:0002087!7.88e-24!119;CL:0000763!1.60e-23!112;CL:0000049!1.60e-23!112;CL:0000766!3.51e-20!76;CL:0000839!6.24e-18!70;CL:0000557!1.46e-17!71;CL:0002057!1.59e-16!42;CL:0002194!3.60e-16!63;CL:0000576!3.60e-16!63;CL:0000040!3.60e-16!63;CL:0000559!3.60e-16!63;CL:0002009!1.90e-15!65;CL:0000860!5.06e-15!45;CL:0000945!4.84e-12!24;CL:0000826!4.84e-12!24;CL:0000236!1.86e-09!14;CL:0000838!2.66e-08!52;CL:0000134!2.77e-08!358;CL:0000542!4.62e-08!53;CL:0000051!4.62e-08!53;CL:0002320!7.83e-08!365 | |||
|ontology_enrichment_celltype_v019=CL:0000236;1.13e-23;13!CL:0000945;7.77e-13;24!CL:0000542;1.16e-07;53!CL:0000047;1.70e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,5.60e-22,14;CL:0000988,5.39e-14,177;CL:0000945,7.88e-13,24;CL:0000826,7.88e-13,24;CL:0002032,1.78e-09,161;CL:0000837,1.78e-09,161;CL:0000037,5.12e-09,168;CL:0002031,5.56e-09,120;CL:0000838,3.02e-08,52;CL:0000542,4.39e-08,53;CL:0000051,4.39e-08,53;CL:0000738,8.74e-08,136;CL:0002087,1.32e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000051;1.16e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.18e-22!102;UBERON:0003061!1.18e-22!102;UBERON:0002193!6.31e-21!112;UBERON:0002371!1.16e-14!80;UBERON:0002405!5.23e-14!115;UBERON:0001474!4.43e-13!86;UBERON:0004765!5.51e-10!101;UBERON:0001434!5.51e-10!101;UBERON:0002384!3.18e-07!375;UBERON:0004177!6.55e-07!7;UBERON:0002106!8.08e-07!3;UBERON:0004854!8.08e-07!3;UBERON:0009034!8.08e-07!3;UBERON:0002095!8.08e-07!3;UBERON:0004782!8.08e-07!3;UBERON:0003281!8.08e-07!3;UBERON:0009664!8.08e-07!3;UBERON:0002296!8.08e-07!3;UBERON:0005602!8.08e-07!3;UBERON:0001179!8.08e-07!3;UBERON:0006293!8.08e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.92e-12;10!UBERON:0000178;2.88e-08;15!UBERON:0000179;2.88e-08;15!UBERON:0000463;2.88e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.85e-12,10;UBERON:0000358,3.85e-12,10;UBERON:0000307,3.85e-12,10;UBERON:0000091,3.85e-12,10;UBERON:0000087,3.85e-12,10;UBERON:0007010,3.85e-12,10;UBERON:0007806,3.85e-12,10;UBERON:0008780,3.85e-12,10;UBERON:0005728,3.85e-12,10;UBERON:0000178,2.85e-08,15;UBERON:0000179,2.85e-08,15;UBERON:0000463,2.85e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.157421562627358,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,1.66198622559563,0.802177789880567,0.434021741431704,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0.47296445977717,0,0,0,0.188242339542605,0,0,0,0.962787081228281,0.639337125799041,0,0.398927315243264,0,0.580418477257168,1.13477044938228,1.24564449799115,0,0,0.217188844705117,0.605399502633369,0.736555271975129,0,0.211255286311942,0,0.209658645508376,0.112328631146495,0.300353785683013,0.48217676009124,0,0,0,0,0.546138611262131,0.889509253863555,1.28019066769952,1.20118796110804,1.14950487990897,0,0.954053754535364,1.70763890732835,1.17447437874188,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0,0,0,0,0,0,0,0,0,0.528290604079356,0,1.00883967391873,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.476463550915578,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0.649243880549111,0,0.456469358066384,0,2.50634477090067,0,0,0,1.27753871307098,0.687010689511529,0,0,0.166849141711909,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0.111443384277478,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55825354416746,3.70691816839509,2.8193926366473,0.269604531922708,0,0,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57732412567589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.981392365535065,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.563903507879121,0.322289439867886,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.322944549180031,0.0620747142958579,0,0,0,0,0,0.673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p4@SPATC1 | |||
}} |
Latest revision as of 00:23, 17 September 2015
Short description: | p4@SPATC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SPATC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -179bp_to_ENST00000377470, NM_001134374, NM_198572, uc011lkw.1, uc011lkx.1_5end |
EntrezGene: | SPATC1 |
HGNC: | 30510 |
UniProt: | Q76KD6B4DWW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 5.60e-22 | 14 |
hematopoietic cell | 5.39e-14 | 177 |
lymphocyte of B lineage | 7.88e-13 | 24 |
pro-B cell | 7.88e-13 | 24 |
hematopoietic oligopotent progenitor cell | 1.78e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-09 | 161 |
hematopoietic stem cell | 5.12e-09 | 168 |
hematopoietic lineage restricted progenitor cell | 5.56e-09 | 120 |
lymphoid lineage restricted progenitor cell | 3.02e-08 | 52 |
lymphocyte | 4.39e-08 | 53 |
common lymphoid progenitor | 4.39e-08 | 53 |
leukocyte | 8.74e-08 | 136 |
nongranular leukocyte | 1.32e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.85e-12 | 10 |
blastocyst | 3.85e-12 | 10 |
blastula | 3.85e-12 | 10 |
bilaminar disc | 3.85e-12 | 10 |
inner cell mass | 3.85e-12 | 10 |
cleaving embryo | 3.85e-12 | 10 |
connecting stalk | 3.85e-12 | 10 |
inner cell mass derived epiblast | 3.85e-12 | 10 |
extraembryonic mesoderm | 3.85e-12 | 10 |
blood | 2.85e-08 | 15 |
haemolymphatic fluid | 2.85e-08 | 15 |
organism substance | 2.85e-08 | 15 |