FFCP PHASE1:Hg19::chr8:42010529..42010620,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=570 | |||
|TSSclassifier=strong | |||
|UniProt=P53677,E5RJ52,Q7Z472 | |||
|association_with_transcript=0bp_to_ENST00000396926,ENST00000520685,ENST00000521280,ENST00000530375_5end | |||
|cluster_id=chr8:42010529..42010620,+ | |||
|description=CAGE_peak_1_at_AP3M2_5end | |||
|id=chr8:42010529..42010620,+ | |||
|ontology_enrichment_celltype=CL:0000084!5.43e-09!25;CL:0000827!5.43e-09!25;CL:0000791!2.70e-08!18;CL:0000789!2.70e-08!18;CL:0002420!2.70e-08!18;CL:0002419!2.70e-08!18;CL:0000790!2.70e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;5.08e-09;25!CL:0000791;2.65e-08;18!CL:0000789;2.65e-08;18!CL:0002419;2.65e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.43e-09,25;CL:0000827,5.43e-09,25;CL:0000791,2.70e-08,18;CL:0000789,2.70e-08,18;CL:0002420,2.70e-08,18;CL:0002419,2.70e-08,18;CL:0000790,2.70e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;2.65e-08;18!UBERON:0006601;7.40e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.75e-24!94;UBERON:0001016!4.75e-24!94;UBERON:0005743!1.33e-22!86;UBERON:0001017!1.77e-22!82;UBERON:0001049!8.26e-22!57;UBERON:0005068!8.26e-22!57;UBERON:0006241!8.26e-22!57;UBERON:0007135!8.26e-22!57;UBERON:0000955!1.67e-20!69;UBERON:0006238!1.67e-20!69;UBERON:0002616!9.19e-20!59;UBERON:0002780!2.43e-19!41;UBERON:0001890!2.43e-19!41;UBERON:0006240!2.43e-19!41;UBERON:0003080!9.68e-19!42;UBERON:0002020!1.85e-16!34;UBERON:0003528!1.85e-16!34;UBERON:0001893!1.91e-16!34;UBERON:0001869!4.44e-16!32;UBERON:0002791!8.44e-16!33;UBERON:0002346!9.65e-16!90;UBERON:0003075!4.08e-15!86;UBERON:0007284!4.08e-15!86;UBERON:0003056!5.10e-13!61;UBERON:0007023!1.91e-12!115;UBERON:0000956!2.50e-12!25;UBERON:0000203!2.50e-12!25;UBERON:0002619!2.72e-12!22;UBERON:0000924!1.04e-11!173;UBERON:0006601!1.04e-11!173;UBERON:0001950!2.22e-11!20;UBERON:0004121!3.96e-11!169;UBERON:0000153!1.73e-10!129;UBERON:0007811!1.73e-10!129;UBERON:0000033!3.01e-10!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.31e-14;32!UBERON:0001893;1.44e-14;34!UBERON:0003528;2.00e-14;34!UBERON:0002020;2.00e-14;34!UBERON:0002791;4.23e-14;32!UBERON:0002780;7.23e-14;41!UBERON:0001890;7.23e-14;41!UBERON:0000073;1.01e-12;53!UBERON:0002616;1.01e-12;53!UBERON:0002619;2.09e-12;22!UBERON:0000956;2.13e-12;25!UBERON:0000203;2.13e-12;25!UBERON:0001950;1.78e-11;20!UBERON:0000955;2.10e-10;68!UBERON:0001017;3.71e-10;75!UBERON:0001016;2.81e-09;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.81e-24,89;UBERON:0001017,7.11e-23,81;UBERON:0001049,2.44e-22,56;UBERON:0005068,2.44e-22,56;UBERON:0006241,2.44e-22,56;UBERON:0007135,2.44e-22,56;UBERON:0000073,3.77e-21,53;UBERON:0002616,3.77e-21,53;UBERON:0000955,6.30e-21,68;UBERON:0006238,6.30e-21,68;UBERON:0002780,2.43e-19,41;UBERON:0001890,2.43e-19,41;UBERON:0003080,2.43e-19,41;UBERON:0006240,2.43e-19,41;UBERON:0002346,1.56e-16,86;UBERON:0003528,1.85e-16,34;UBERON:0002020,1.85e-16,34;UBERON:0001893,1.91e-16,34;UBERON:0001869,4.44e-16,32;UBERON:0003075,6.53e-16,82;UBERON:0007284,6.53e-16,82;UBERON:0002791,1.80e-15,32;UBERON:0003056,1.18e-13,61;UBERON:0000956,2.50e-12,25;UBERON:0000203,2.50e-12,25;UBERON:0002619,2.72e-12,22;UBERON:0004121,4.34e-12,171;UBERON:0000924,4.34e-12,171;UBERON:0006601,4.34e-12,171;UBERON:0007023,4.63e-12,114;UBERON:0010371,8.20e-12,104;UBERON:0001950,2.22e-11,20;UBERON:0010314,3.17e-10,132 | |||
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| |||
|short_description=p1@AP3M2 | |||
}} |
Latest revision as of 07:12, 18 September 2015
Short description: | p1@AP3M2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AP3M2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000396926, ENST00000520685, ENST00000521280, ENST00000530375_5end |
EntrezGene: | AP3M2 |
HGNC: | 570 |
UniProt: | P53677E5RJ52Q7Z472 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.43e-09 | 25 |
pro-T cell | 5.43e-09 | 25 |
mature alpha-beta T cell | 2.70e-08 | 18 |
alpha-beta T cell | 2.70e-08 | 18 |
immature T cell | 2.70e-08 | 18 |
mature T cell | 2.70e-08 | 18 |
immature alpha-beta T cell | 2.70e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.81e-24 | 89 |
central nervous system | 7.11e-23 | 81 |
neural tube | 2.44e-22 | 56 |
neural rod | 2.44e-22 | 56 |
future spinal cord | 2.44e-22 | 56 |
neural keel | 2.44e-22 | 56 |
regional part of nervous system | 3.77e-21 | 53 |
regional part of brain | 3.77e-21 | 53 |
brain | 6.30e-21 | 68 |
future brain | 6.30e-21 | 68 |
regional part of forebrain | 2.43e-19 | 41 |
forebrain | 2.43e-19 | 41 |
anterior neural tube | 2.43e-19 | 41 |
future forebrain | 2.43e-19 | 41 |
neurectoderm | 1.56e-16 | 86 |
brain grey matter | 1.85e-16 | 34 |
gray matter | 1.85e-16 | 34 |
telencephalon | 1.91e-16 | 34 |
cerebral hemisphere | 4.44e-16 | 32 |
neural plate | 6.53e-16 | 82 |
presumptive neural plate | 6.53e-16 | 82 |
regional part of telencephalon | 1.80e-15 | 32 |
pre-chordal neural plate | 1.18e-13 | 61 |
cerebral cortex | 2.50e-12 | 25 |
pallium | 2.50e-12 | 25 |
regional part of cerebral cortex | 2.72e-12 | 22 |
ectoderm-derived structure | 4.34e-12 | 171 |
ectoderm | 4.34e-12 | 171 |
presumptive ectoderm | 4.34e-12 | 171 |
adult organism | 4.63e-12 | 114 |
ecto-epithelium | 8.20e-12 | 104 |
neocortex | 2.22e-11 | 20 |
structure with developmental contribution from neural crest | 3.17e-10 | 132 |