FFCP PHASE1:Mm9::chr10:77441365..77441416,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:77441365..77441416,+
|short_description=p1@1810043G02Rik
|description=CAGE_peak_1_at_1810043G02Rik_5end
|association_with_transcript=0bp_to_ENSMUST0000002...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=67884 | |EntrezGene=67884 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=347 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q2H4,Q3U699,Q8C6G1,Q9D127 | |UniProt=E9Q2H4,Q3U699,Q8C6G1,Q9D127 | ||
|association_with_transcript=0bp_to_ENSMUST00000020526,ENSMUST00000123999,ENSMUST00000149074,NM_026431,uc007fwn.1,uc011xhp.1_5end | |||
|cluster_id=chr10:77441365..77441416,+ | |||
|description=CAGE_peak_1_at_1810043G02Rik_5end | |||
|id=chr10:77441365..77441416,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.29e-15!50;CL:0000221!3.47e-15!44;CL:0000133!3.47e-15!44;CL:0002319!9.09e-15!43;CL:0000393!6.90e-12!39;CL:0000211!6.90e-12!39;CL:0000540!2.26e-10!33;CL:0000047!2.26e-10!33;CL:0000031!2.26e-10!33;CL:0000404!2.26e-10!33;CL:0000117!3.00e-09!23;CL:0000337!3.00e-09!23;CL:0002321!1.23e-07!70;CL:0000220!1.23e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.47e-15,44;CL:0000133,3.47e-15,44;CL:0002319,9.09e-15,43;CL:0000393,6.90e-12,39;CL:0000211,6.90e-12,39;CL:0000540,2.26e-10,33;CL:0000047,2.26e-10,33;CL:0000031,2.26e-10,33;CL:0000404,2.26e-10,33;CL:0000117,3.00e-09,23;CL:0000337,3.00e-09,23;CL:0002321,1.21e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.28e-31!73;UBERON:0005743!2.28e-31!73;UBERON:0000073!6.63e-31!75;UBERON:0001016!6.63e-31!75;UBERON:0004121!1.04e-27!102;UBERON:0000924!1.04e-27!102;UBERON:0006601!1.04e-27!102;UBERON:0002346!1.76e-24!71;UBERON:0003075!1.76e-24!71;UBERON:0007284!1.76e-24!71;UBERON:0001049!1.89e-23!52;UBERON:0005068!1.89e-23!52;UBERON:0006241!1.89e-23!52;UBERON:0007135!1.89e-23!52;UBERON:0000955!4.48e-22!50;UBERON:0006238!4.48e-22!50;UBERON:0000033!9.66e-22!63;UBERON:0002616!1.01e-21!49;UBERON:0003056!1.33e-17!49;UBERON:0003080!6.61e-17!40;UBERON:0002780!2.47e-16!39;UBERON:0001890!2.47e-16!39;UBERON:0006240!2.47e-16!39;UBERON:0002020!5.24e-15!34;UBERON:0002791!2.32e-12!29;UBERON:0003528!2.32e-12!29;UBERON:0001893!2.32e-12!29;UBERON:0007811!4.05e-12!86;UBERON:0000153!1.71e-11!94;UBERON:0000956!8.22e-09!21;UBERON:0001869!8.22e-09!21;UBERON:0000203!8.22e-09!21;UBERON:0002619!1.44e-08!17;UBERON:0003076!3.31e-07!12;UBERON:0003057!3.31e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.28e-31,73;UBERON:0001016,6.62e-31,75;UBERON:0004121,4.19e-27,95;UBERON:0000924,4.19e-27,95;UBERON:0006601,4.19e-27,95;UBERON:0000073,1.17e-24,54;UBERON:0002346,2.22e-24,64;UBERON:0003075,2.22e-24,64;UBERON:0007284,2.22e-24,64;UBERON:0001049,1.89e-23,52;UBERON:0005068,1.89e-23,52;UBERON:0006241,1.89e-23,52;UBERON:0007135,1.89e-23,52;UBERON:0010371,4.12e-22,73;UBERON:0000955,2.60e-20,47;UBERON:0006238,2.60e-20,47;UBERON:0002616,5.75e-20,46;UBERON:0010314,3.79e-18,92;UBERON:0003056,1.33e-17,49;UBERON:0003080,6.61e-17,40;UBERON:0002780,2.47e-16,39;UBERON:0001890,2.47e-16,39;UBERON:0006240,2.47e-16,39;UBERON:0002020,5.24e-15,34;UBERON:0003528,2.32e-12,29;UBERON:0002791,2.32e-12,29;UBERON:0001893,2.32e-12,29;UBERON:0000956,8.21e-09,21;UBERON:0001869,8.21e-09,21;UBERON:0000203,8.21e-09,21;UBERON:0002619,1.44e-08,17;UBERON:0003076,3.31e-07,12;UBERON:0003057,3.31e-07,12 | |||
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| ||
|short_description=p1@1810043G02Rik | |||
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Latest revision as of 08:21, 26 September 2015
Short description: | p1@1810043G02Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_1810043G02Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:347 |
Association with transcript: | 0bp_to_ENSMUST00000020526, ENSMUST00000123999, ENSMUST00000149074, NM_026431, uc007fwn.1, uc011xhp.1_5end |
EntrezGene: | 1810043G02Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.47e-15 | 44 |
neurectodermal cell | 3.47e-15 | 44 |
neural cell | 9.09e-15 | 43 |
electrically responsive cell | 6.90e-12 | 39 |
electrically active cell | 6.90e-12 | 39 |
neuron | 2.26e-10 | 33 |
neuronal stem cell | 2.26e-10 | 33 |
neuroblast | 2.26e-10 | 33 |
electrically signaling cell | 2.26e-10 | 33 |
CNS neuron (sensu Vertebrata) | 3.00e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.00e-09 | 23 |
embryonic cell | 1.21e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.28e-31 | 73 |
nervous system | 6.62e-31 | 75 |
ectoderm-derived structure | 4.19e-27 | 95 |
ectoderm | 4.19e-27 | 95 |
presumptive ectoderm | 4.19e-27 | 95 |
regional part of nervous system | 1.17e-24 | 54 |
neurectoderm | 2.22e-24 | 64 |
neural plate | 2.22e-24 | 64 |
presumptive neural plate | 2.22e-24 | 64 |
neural tube | 1.89e-23 | 52 |
neural rod | 1.89e-23 | 52 |
future spinal cord | 1.89e-23 | 52 |
neural keel | 1.89e-23 | 52 |
ecto-epithelium | 4.12e-22 | 73 |
brain | 2.60e-20 | 47 |
future brain | 2.60e-20 | 47 |
regional part of brain | 5.75e-20 | 46 |
structure with developmental contribution from neural crest | 3.79e-18 | 92 |
pre-chordal neural plate | 1.33e-17 | 49 |
anterior neural tube | 6.61e-17 | 40 |
regional part of forebrain | 2.47e-16 | 39 |
forebrain | 2.47e-16 | 39 |
future forebrain | 2.47e-16 | 39 |
gray matter | 5.24e-15 | 34 |
brain grey matter | 2.32e-12 | 29 |
regional part of telencephalon | 2.32e-12 | 29 |
telencephalon | 2.32e-12 | 29 |
cerebral cortex | 8.21e-09 | 21 |
cerebral hemisphere | 8.21e-09 | 21 |
pallium | 8.21e-09 | 21 |
regional part of cerebral cortex | 1.44e-08 | 17 |
posterior neural tube | 3.31e-07 | 12 |
chordal neural plate | 3.31e-07 | 12 |