FFCP PHASE1:Mm9::chr5:118694992..118695057,-: Difference between revisions
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{{FFCP|EntrezGene=269695|HGNC=|MCL_coexpression_id=1|UniProt=Q3UF64,D3Z7E1,D3Z0I9|association_with_transcript=0bp_to_ENSMUST00000072529,ENSMUST00000133372,ENSMUST00000154786,NM_001109902,uc012ecl.1_5end|description=CAGE_peak_1_at_Rnft2_5end|id=chr5:118694992..118695057,-|ontology_enrichment_celltype=CL:0000117!2.68e-13!23;CL:0000337!2.68e-13!23;CL:0000540!4.56e-13!33;CL:0000047!4.56e-13!33;CL:0000031!4.56e-13!33;CL:0000404!4.56e-13!33;CL:0002319!2.07e-12!43;CL:0000221!2.15e-12!44;CL:0000133!2.15e-12!44;CL:0000393!2.68e-11!39;CL:0000211!2.68e-11!39;CL:0000055!2.72e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-13,23;CL:0000337,1.09e-13,23;CL:0000540,1.88e-13,33;CL:0000047,1.88e-13,33;CL:0000031,1.88e-13,33;CL:0000404,1.88e-13,33;CL:0002319,9.02e-13,43;CL:0000221,9.37e-13,44;CL:0000133,9.37e-13,44;CL:0000393,2.75e-11,39;CL:0000211,2.75e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.34e-30!73;UBERON:0005743!1.34e-30!73;UBERON:0000073!6.78e-30!75;UBERON:0001016!6.78e-30!75;UBERON:0004121!1.30e-28!102;UBERON:0000924!1.30e-28!102;UBERON:0006601!1.30e-28!102;UBERON:0002346!7.76e-28!71;UBERON:0003075!7.76e-28!71;UBERON:0007284!7.76e-28!71;UBERON:0001049!1.53e-25!52;UBERON:0005068!1.53e-25!52;UBERON:0006241!1.53e-25!52;UBERON:0007135!1.53e-25!52;UBERON:0000033!1.79e-25!63;UBERON:0000955!5.89e-24!50;UBERON:0006238!5.89e-24!50;UBERON:0002616!2.32e-23!49;UBERON:0003056!5.82e-23!49;UBERON:0003080!6.61e-20!40;UBERON:0002020!1.28e-19!34;UBERON:0002780!2.97e-19!39;UBERON:0001890!2.97e-19!39;UBERON:0006240!2.97e-19!39;UBERON:0002791!1.90e-16!29;UBERON:0003528!1.90e-16!29;UBERON:0001893!1.90e-16!29;UBERON:0000153!4.93e-15!94;UBERON:0007811!2.67e-13!86;UBERON:0000956!4.19e-12!21;UBERON:0001869!4.19e-12!21;UBERON:0000203!4.19e-12!21;UBERON:0002619!3.81e-10!17;UBERON:0000468!4.77e-10!333;UBERON:0002021!4.49e-08!10;UBERON:0000411!4.49e-08!10;UBERON:0001950!4.49e-08!10;UBERON:0000922!6.93e-08!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-31,73;UBERON:0001016,7.63e-31,75;UBERON:0002346,1.46e-30,64;UBERON:0003075,1.46e-30,64;UBERON:0007284,1.46e-30,64;UBERON:0004121,8.22e-30,95;UBERON:0000924,8.22e-30,95;UBERON:0006601,8.22e-30,95;UBERON:0000073,1.35e-27,54;UBERON:0010371,7.04e-27,73;UBERON:0001049,2.42e-26,52;UBERON:0005068,2.42e-26,52;UBERON:0006241,2.42e-26,52;UBERON:0007135,2.42e-26,52;UBERON:0003056,1.12e-23,49;UBERON:0000955,6.78e-23,47;UBERON:0006238,6.78e-23,47;UBERON:0002616,2.73e-22,46;UBERON:0003080,1.61e-20,40;UBERON:0002020,3.20e-20,34;UBERON:0002780,7.61e-20,39;UBERON:0001890,7.61e-20,39;UBERON:0006240,7.61e-20,39;UBERON:0010314,5.57e-19,92;UBERON:0003528,6.06e-17,29;UBERON:0002791,6.06e-17,29;UBERON:0001893,6.06e-17,29;UBERON:0000956,1.86e-12,21;UBERON:0001869,1.86e-12,21;UBERON:0000203,1.86e-12,21;UBERON:0002619,1.97e-10,17;UBERON:0002021,2.72e-08,10;UBERON:0000411,2.72e-08,10;UBERON:0001950,2.72e-08,10;UBERON:0000922,1.08e-07,320|phase1_expression=1.92178616525753,0.348975407639361,0,0,0,0.503637815735669,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0.239316476986009,0.342401459862411,0.611942816932982,0.333109761815663,0.404950534779652,0,0.630924330716475,0.548457734422955,0.42438965179803,6.88850650223665,0,0,0.47997726838022,0,0,0,0.215471232685889,0.190023419456374,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.866554859253824,0.664938581433969,0.816677425049476,0.418531630736908,0,0,0,0,0,5.16176953699867,4.25783111121961,4.9557623083654,3.12956537739216,3.48840250208714,4.17403747195497,5.05517737593137,2.65974201088189,2.87505128729943,0.335565212115473,0,0,0.771778308107841,0.573066879877513,1.54701627683233,30.5497855897993,31.2104677770499,31.691570175309,1.35537812827653,4.4464739805557,1.3498495759221,0,0,6.5912024314049,9.60545763303886,15.4497522339632,21.7359560714022,15.984697062705,39.1341848633211,44.8363138131775,17.5161842877384,19.9358579717932,25.7381260250806,24.2254938198655,30.0065244500191,28.2636021191488,32.8396856448183,31.6547246864337,25.0038417867245,29.0350318961436,21.3849791812038,21.2389564409766,31.5252586456824,31.3217697758026,29.2647129945722,1.96888102666279,2.41828992341714,0.289864488701678,0,0,0,0,0,1.82577746171277,1.36344258062446,1.03914401841148,0.70667914902068,4.08445917352373,2.56652954828636,5.09610479413291,0,0,1.26679932737549,0.505524445014783,1.25602267690966,1.8125651855302,3.26572705942614,4.3371331691534,5.1759131313064,1.15307748628029,2.71300752994721,1.64624189989987,2.63899841792318,0.741584903203122,3.18118585223806,0,3.39710384889559,1.76673214768315,0.969750506270444,5.59175283654366,30.1564220921894,23.6674778699204,0.255457055208591,0,0,0,34.0024751448948,39.8025524452205,23.9999812535571,44.1513773288382,34.010155824934,38.2330001989591,30.5013574567384,2.64782346010822,1.99051152976149,4.29628689337247,6.31325567659422,6.50602214813519,8.96618207290544,8.82304436046211,6.32960234910003,8.43652589476465,11.914575986491,12.087522468205,17.8505325809921,5.6047678162539,11.3463648100692,12.4925298156404,6.57587197282724,5.83899223373756,8.358051996532,4.93877127379064,5.37392520409932,0,0,0,7.45652781127807,2.11073453982987,1.2604344302271,3.78791576936336,2.16440654922144,1.3884040159864,0.465067889500816,2.41446061259657,0.934122738937356,1.97471819896177,0.985004784474571,1.21603214318784,0.877199924551994,1.53685080703735,0.536825675041487,37.2213208958505,24.3883931338904,0.991256348951394,0.793351699990633,6.18535926552179,5.80591679651096,4.76809606891745,3.63030344322017,2.44615848229357,1.52180500890047,1.42358718463353,0.164698954724011,1.75934646160189,0.596869416123452,1.9496408711912,2.69645822596266,1.29682829924817,0.995706366271836,3.60369011810855,5.25543158004753,6.76246414038483,4.07302655690629,3.68509725618489,2.03393877681924,2.52946148497029,1.77132177575523,0.627994911365499,0.987177311374404,0,1.66845105716094,1.17935397067922,1.12431056192427,0.608580364165509,0.241177159752417,0.25462585178142,0,0.324270453550071,0.549122826376163,0,0,0.624075346229121,0.757736633841335,0.538192240565737,0.482443521363367,0.923765950833023,5.49525094134406,7.00749398700711,3.56464680127895,4.69380496577004,4.35516269348721,1.19021820443007,0.975668239288994,2.20689201748667,2.43611158613652,1.43509291791738,0.491589944147214,1.20879487306127,0.289298117163023,0,0,2.45882136509518,0.551873492609465,23.922037908181,21.8013737061498,2.13115428989678,0.252470927204373,4.41711507182759,8.19921363022941,8.40151251157916,3.10659437338318,4.90157082981267,5.66153061577665,3.64329631507405,4.9683495844923,5.92931666919785,28.9189184779626,2.2710413633323,3.5613120733451,2.44330439030364,3.46437258242324,0,3.39892890616974,2.11626489875326,1.32023555829129,2.36241514304618,2.45948118355142,1.03371317267288,0.727067458955011,1.06949213515416,0.316036757935816,0,0,14.6389030474129,5.04171063287669,7.50280365939976,5.5727629108214,8.33499098118686,7.13475270408282,7.0756078858912,5.78483403317739,0.938686832254841,3.60114520468494,1.32317038832977,1.81374878235628,1.93757312035087,3.37752379597673,1.55184047204077,2.46211349617592,0.582961673259701,25.0324157714188,0,4.54051109519089,1.85194527369712,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,1.90934123603023,7.43389584915668,6.09958401380546,3.56417624711944,2.92723614420256,3.49380101993884,3.10187996685088,2.0663363931334,1.04702376793612,0.259229946583586,1.86401793926078,0.56369293868419,3.58839710505549,4.63283773279873,5.83353565032143,4.39143399824286,2.53434188236167,2.93393096614385,5.07797100891405,6.8158573876712,7.00593950395418,4.60848010012585,1.26404448251271,2.8381530140623,2.05421914329655,1.16928740680016,2.32734704367726,0.39736270956253,0.961563596159751,1.47689527174577,0.706765149637033,0.685861259894999,0.604957110821043,0.779663045918019,0.962118416403295,0.233753804363138,0.906921534460845,0.443971906748129,1.16628013592318,1.67884616364078,2.31827512838629,1.50145980360946,1.28206136987086,2.35805216986972,1.00314420807073,59.298943474792,56.1596788538756,60.726924424576,42.7914424035782,41.7900337060092,47.5898155355511,49.9516650171536,33.7740902418165,41.6891016265468,35.2077011991238,2.90604573235695,11.9707462020309,9.56108192223151,7.05009479498053,4.82110274044359,5.33146174505041,7.3341420174533,9.47761263298913,8.02298023979538,9.09709962349671,8.87177549615839,5.84741658296836,7.77224512000024,6.78666615491614,7.17943361945166,5.23923060411381,7.3007125345259,7.7163688185482,11.9504911232959,9.27353196846703,6.17164654293748,4.2594193478241,5.48403236878838,7.99405291477807,7.52875043322645,5.4153349050673,5.48783918618318,5.78753365163254,7.74083448921412,10.661703161497,7.59264115994714,5.91026894253381,3.27384834535751,6.8172210121825,5.78719832943424,14.7388240983388,8.4215379040347,3.43793686477277,2.86932498103265,2.42650561031467,3.70988536992674|short_description=p1@Rnft2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=269695 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UF64,D3Z7E1,D3Z0I9 | |||
|association_with_transcript=0bp_to_ENSMUST00000072529,ENSMUST00000133372,ENSMUST00000154786,NM_001109902,uc012ecl.1_5end | |||
|cluster_id=chr5:118694992..118695057,- | |||
|description=CAGE_peak_1_at_Rnft2_5end | |||
|id=chr5:118694992..118695057,- | |||
|ontology_enrichment_celltype=CL:0000117!2.68e-13!23;CL:0000337!2.68e-13!23;CL:0000540!4.56e-13!33;CL:0000047!4.56e-13!33;CL:0000031!4.56e-13!33;CL:0000404!4.56e-13!33;CL:0002319!2.07e-12!43;CL:0000221!2.15e-12!44;CL:0000133!2.15e-12!44;CL:0000393!2.68e-11!39;CL:0000211!2.68e-11!39;CL:0000055!2.72e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.09e-13,23;CL:0000337,1.09e-13,23;CL:0000540,1.88e-13,33;CL:0000047,1.88e-13,33;CL:0000031,1.88e-13,33;CL:0000404,1.88e-13,33;CL:0002319,9.02e-13,43;CL:0000221,9.37e-13,44;CL:0000133,9.37e-13,44;CL:0000393,2.75e-11,39;CL:0000211,2.75e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.34e-30!73;UBERON:0005743!1.34e-30!73;UBERON:0000073!6.78e-30!75;UBERON:0001016!6.78e-30!75;UBERON:0004121!1.30e-28!102;UBERON:0000924!1.30e-28!102;UBERON:0006601!1.30e-28!102;UBERON:0002346!7.76e-28!71;UBERON:0003075!7.76e-28!71;UBERON:0007284!7.76e-28!71;UBERON:0001049!1.53e-25!52;UBERON:0005068!1.53e-25!52;UBERON:0006241!1.53e-25!52;UBERON:0007135!1.53e-25!52;UBERON:0000033!1.79e-25!63;UBERON:0000955!5.89e-24!50;UBERON:0006238!5.89e-24!50;UBERON:0002616!2.32e-23!49;UBERON:0003056!5.82e-23!49;UBERON:0003080!6.61e-20!40;UBERON:0002020!1.28e-19!34;UBERON:0002780!2.97e-19!39;UBERON:0001890!2.97e-19!39;UBERON:0006240!2.97e-19!39;UBERON:0002791!1.90e-16!29;UBERON:0003528!1.90e-16!29;UBERON:0001893!1.90e-16!29;UBERON:0000153!4.93e-15!94;UBERON:0007811!2.67e-13!86;UBERON:0000956!4.19e-12!21;UBERON:0001869!4.19e-12!21;UBERON:0000203!4.19e-12!21;UBERON:0002619!3.81e-10!17;UBERON:0000468!4.77e-10!333;UBERON:0002021!4.49e-08!10;UBERON:0000411!4.49e-08!10;UBERON:0001950!4.49e-08!10;UBERON:0000922!6.93e-08!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-31,73;UBERON:0001016,7.63e-31,75;UBERON:0002346,1.46e-30,64;UBERON:0003075,1.46e-30,64;UBERON:0007284,1.46e-30,64;UBERON:0004121,8.22e-30,95;UBERON:0000924,8.22e-30,95;UBERON:0006601,8.22e-30,95;UBERON:0000073,1.35e-27,54;UBERON:0010371,7.04e-27,73;UBERON:0001049,2.42e-26,52;UBERON:0005068,2.42e-26,52;UBERON:0006241,2.42e-26,52;UBERON:0007135,2.42e-26,52;UBERON:0003056,1.12e-23,49;UBERON:0000955,6.78e-23,47;UBERON:0006238,6.78e-23,47;UBERON:0002616,2.73e-22,46;UBERON:0003080,1.61e-20,40;UBERON:0002020,3.20e-20,34;UBERON:0002780,7.61e-20,39;UBERON:0001890,7.61e-20,39;UBERON:0006240,7.61e-20,39;UBERON:0010314,5.57e-19,92;UBERON:0003528,6.06e-17,29;UBERON:0002791,6.06e-17,29;UBERON:0001893,6.06e-17,29;UBERON:0000956,1.86e-12,21;UBERON:0001869,1.86e-12,21;UBERON:0000203,1.86e-12,21;UBERON:0002619,1.97e-10,17;UBERON:0002021,2.72e-08,10;UBERON:0000411,2.72e-08,10;UBERON:0001950,2.72e-08,10;UBERON:0000922,1.08e-07,320 | |||
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| |||
|short_description=p1@Rnft2 | |||
}} |
Latest revision as of 18:23, 1 October 2015
Short description: | p1@Rnft2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnft2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000072529, ENSMUST00000133372, ENSMUST00000154786, NM_001109902, uc012ecl.1_5end |
EntrezGene: | Rnft2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.09e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-13 | 23 |
neuron | 1.88e-13 | 33 |
neuronal stem cell | 1.88e-13 | 33 |
neuroblast | 1.88e-13 | 33 |
electrically signaling cell | 1.88e-13 | 33 |
neural cell | 9.02e-13 | 43 |
ectodermal cell | 9.37e-13 | 44 |
neurectodermal cell | 9.37e-13 | 44 |
electrically responsive cell | 2.75e-11 | 39 |
electrically active cell | 2.75e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-31 | 73 |
nervous system | 7.63e-31 | 75 |
neurectoderm | 1.46e-30 | 64 |
neural plate | 1.46e-30 | 64 |
presumptive neural plate | 1.46e-30 | 64 |
ectoderm-derived structure | 8.22e-30 | 95 |
ectoderm | 8.22e-30 | 95 |
presumptive ectoderm | 8.22e-30 | 95 |
regional part of nervous system | 1.35e-27 | 54 |
ecto-epithelium | 7.04e-27 | 73 |
neural tube | 2.42e-26 | 52 |
neural rod | 2.42e-26 | 52 |
future spinal cord | 2.42e-26 | 52 |
neural keel | 2.42e-26 | 52 |
pre-chordal neural plate | 1.12e-23 | 49 |
brain | 6.78e-23 | 47 |
future brain | 6.78e-23 | 47 |
regional part of brain | 2.73e-22 | 46 |
anterior neural tube | 1.61e-20 | 40 |
gray matter | 3.20e-20 | 34 |
regional part of forebrain | 7.61e-20 | 39 |
forebrain | 7.61e-20 | 39 |
future forebrain | 7.61e-20 | 39 |
structure with developmental contribution from neural crest | 5.57e-19 | 92 |
brain grey matter | 6.06e-17 | 29 |
regional part of telencephalon | 6.06e-17 | 29 |
telencephalon | 6.06e-17 | 29 |
cerebral cortex | 1.86e-12 | 21 |
cerebral hemisphere | 1.86e-12 | 21 |
pallium | 1.86e-12 | 21 |
regional part of cerebral cortex | 1.97e-10 | 17 |
occipital lobe | 2.72e-08 | 10 |
visual cortex | 2.72e-08 | 10 |
neocortex | 2.72e-08 | 10 |
embryo | 1.08e-07 | 320 |