FFCP PHASE1:Mm9::chr5:148672191..148672246,+: Difference between revisions
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{{FFCP|EntrezGene=66537|HGNC=|UniProt=Q9CQT5|association_with_transcript=0bp_to_ENSMUST00000031654,NM_025624,uc009aoj.1,uc009aok.1_5end|description=CAGE_peak_1_at_Pomp_5end|id=chr5:148672191..148672246,+|ontology_enrichment_celltype=CL:0002371!9.66e-11!118;CL:0000144!1.47e-09!121;CL:0000012!1.47e-09!121;CL:0000548!1.83e-09!115;CL:0000004!1.83e-09!115;CL:0000255!1.83e-09!115;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000723!8.30e-08!91;CL:0000048!8.30e-08!91;CL:0000034!2.67e-07!97;CL:0000055!7.94e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.88e-08,23;CL:0000337,4.88e-08,23;CL:0000723,8.30e-08,91;CL:0000048,8.30e-08,91;CL:0000034,2.67e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.08e-09!34;UBERON:0001049!3.61e-09!52;UBERON:0005068!3.61e-09!52;UBERON:0006241!3.61e-09!52;UBERON:0007135!3.61e-09!52;UBERON:0000073!7.48e-09!75;UBERON:0001016!7.48e-09!75;UBERON:0000955!1.38e-08!50;UBERON:0006238!1.38e-08!50;UBERON:0002791!1.66e-08!29;UBERON:0003528!1.66e-08!29;UBERON:0001893!1.66e-08!29;UBERON:0002616!1.81e-08!49;UBERON:0001017!2.97e-08!73;UBERON:0005743!2.97e-08!73;UBERON:0000033!3.43e-08!63;UBERON:0002346!4.00e-08!71;UBERON:0003075!4.00e-08!71;UBERON:0007284!4.00e-08!71;UBERON:0004121!7.25e-08!102;UBERON:0000924!7.25e-08!102;UBERON:0006601!7.25e-08!102;UBERON:0003080!2.99e-07!40;UBERON:0002780!5.38e-07!39;UBERON:0001890!5.38e-07!39;UBERON:0006240!5.38e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.08e-09,34;UBERON:0000073,1.12e-09,54;UBERON:0001049,3.61e-09,52;UBERON:0005068,3.61e-09,52;UBERON:0006241,3.61e-09,52;UBERON:0007135,3.61e-09,52;UBERON:0001016,7.48e-09,75;UBERON:0003528,1.66e-08,29;UBERON:0002791,1.66e-08,29;UBERON:0001893,1.66e-08,29;UBERON:0001017,2.97e-08,73;UBERON:0010314,1.06e-07,92;UBERON:0000955,1.15e-07,47;UBERON:0006238,1.15e-07,47;UBERON:0002616,1.49e-07,46;UBERON:0002050,1.57e-07,294;UBERON:0002346,1.58e-07,64;UBERON:0003075,1.58e-07,64;UBERON:0007284,1.58e-07,64;UBERON:0003080,2.99e-07,40;UBERON:0004121,3.32e-07,95;UBERON:0000924,3.32e-07,95;UBERON:0006601,3.32e-07,95;UBERON:0002780,5.38e-07,39;UBERON:0001890,5.38e-07,39;UBERON:0006240,5.38e-07,39;UBERON:0000923,9.88e-07,291;UBERON:0010316,9.88e-07,291;UBERON:0005291,9.88e-07,291;UBERON:0006598,9.88e-07,291;UBERON:0010317,9.88e-07,291;UBERON:0002532,9.88e-07,291|phase1_expression=120.912379564119,115.859835336268,124.214792353343,93.1589770825037,71.6280893823276,76.5529479918218,109.09710315811,110.271318219106,96.8626408403467,85.9016811601716,224.124320407186,181.162573078409,79.2659379581483,82.0877578714386,83.943659977547,100.630207892743,97.2391010598124,109.465371379308,95.5687602231999,124.346167976823,92.7822295548171,99.8866969080906,156.719873483361,185.911195285939,187.427382631878,194.664635834992,195.56594625622,173.885284777512,221.757330505588,162.811463824915,207.31802746271,69.8533740805594,71.9625801473947,126.785344812351,108.608209026479,132.655246996077,121.072428263585,160.716146202973,276.592711961425,193.703785270305,141.175557127443,151.636097660775,153.906781910876,156.489744743643,147.402057993174,145.919667968537,100.146092076549,147.385005713182,152.242524634989,166.820853405735,129.48744000346,130.814833572124,88.4214333924271,75.4376627691798,80.6625117941914,123.741788733291,111.748041576115,111.385171931928,148.297965810085,151.291420071801,162.894670701088,131.471678442823,114.719028698337,139.034506319976,172.062747086654,153.463704828358,123.734845644101,102.202069215534,119.243054154749,127.715617661779,134.187325342182,152.537625671631,157.258401157549,139.884492703478,156.899036056853,136.044380418283,135.442533629248,151.820244983288,158.829155386956,157.340341262121,162.48205503788,150.543964090904,203.245223273005,171.079833449631,139.352001972451,115.789034091151,140.236105587116,136.071595452469,179.243899619647,133.232660468263,79.7127343929614,226.291479646105,190.39197343817,195.912258564528,163.093880779365,155.017302935678,158.140417068353,125.095856772294,135.8680804073,134.269038313929,136.19558692405,115.493829672886,35.6727335589304,56.8853362522665,208.69736353481,195.593816146776,206.253973566032,124.802980532933,114.968420339344,103.612613067248,105.826049327343,139.749654545273,142.520377304244,180.867168663147,104.30118322937,118.754928806543,82.5631192232809,81.6986366597501,88.4610551949874,86.7070315718113,83.4780939780288,105.702805183478,96.9237158334235,113.013387646457,91.7376575842933,141.778665640768,112.146956537541,274.755450794981,156.423449526943,142.001526155772,124.897664569485,99.14128381705,144.274185759589,138.086346958378,150.438544261122,128.981804138867,73.3243419722277,80.4913099847302,126.866824733705,108.587997637421,130.771045177517,139.550577391118,131.085230498294,115.439890462158,83.3447114603766,103.387772269874,96.2316711228415,91.8396966123506,126.753979844511,107.979571775825,105.570674498369,111.351432073208,103.155529462697,108.306423788394,113.797521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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66537 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q9CQT5 | |||
|association_with_transcript=0bp_to_ENSMUST00000031654,NM_025624,uc009aoj.1,uc009aok.1_5end | |||
|cluster_id=chr5:148672191..148672246,+ | |||
|description=CAGE_peak_1_at_Pomp_5end | |||
|id=chr5:148672191..148672246,+ | |||
|ontology_enrichment_celltype=CL:0002371!9.66e-11!118;CL:0000144!1.47e-09!121;CL:0000012!1.47e-09!121;CL:0000548!1.83e-09!115;CL:0000004!1.83e-09!115;CL:0000255!1.83e-09!115;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000723!8.30e-08!91;CL:0000048!8.30e-08!91;CL:0000034!2.67e-07!97;CL:0000055!7.94e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.88e-08,23;CL:0000337,4.88e-08,23;CL:0000723,8.30e-08,91;CL:0000048,8.30e-08,91;CL:0000034,2.67e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.08e-09!34;UBERON:0001049!3.61e-09!52;UBERON:0005068!3.61e-09!52;UBERON:0006241!3.61e-09!52;UBERON:0007135!3.61e-09!52;UBERON:0000073!7.48e-09!75;UBERON:0001016!7.48e-09!75;UBERON:0000955!1.38e-08!50;UBERON:0006238!1.38e-08!50;UBERON:0002791!1.66e-08!29;UBERON:0003528!1.66e-08!29;UBERON:0001893!1.66e-08!29;UBERON:0002616!1.81e-08!49;UBERON:0001017!2.97e-08!73;UBERON:0005743!2.97e-08!73;UBERON:0000033!3.43e-08!63;UBERON:0002346!4.00e-08!71;UBERON:0003075!4.00e-08!71;UBERON:0007284!4.00e-08!71;UBERON:0004121!7.25e-08!102;UBERON:0000924!7.25e-08!102;UBERON:0006601!7.25e-08!102;UBERON:0003080!2.99e-07!40;UBERON:0002780!5.38e-07!39;UBERON:0001890!5.38e-07!39;UBERON:0006240!5.38e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.08e-09,34;UBERON:0000073,1.12e-09,54;UBERON:0001049,3.61e-09,52;UBERON:0005068,3.61e-09,52;UBERON:0006241,3.61e-09,52;UBERON:0007135,3.61e-09,52;UBERON:0001016,7.48e-09,75;UBERON:0003528,1.66e-08,29;UBERON:0002791,1.66e-08,29;UBERON:0001893,1.66e-08,29;UBERON:0001017,2.97e-08,73;UBERON:0010314,1.06e-07,92;UBERON:0000955,1.15e-07,47;UBERON:0006238,1.15e-07,47;UBERON:0002616,1.49e-07,46;UBERON:0002050,1.57e-07,294;UBERON:0002346,1.58e-07,64;UBERON:0003075,1.58e-07,64;UBERON:0007284,1.58e-07,64;UBERON:0003080,2.99e-07,40;UBERON:0004121,3.32e-07,95;UBERON:0000924,3.32e-07,95;UBERON:0006601,3.32e-07,95;UBERON:0002780,5.38e-07,39;UBERON:0001890,5.38e-07,39;UBERON:0006240,5.38e-07,39;UBERON:0000923,9.88e-07,291;UBERON:0010316,9.88e-07,291;UBERON:0005291,9.88e-07,291;UBERON:0006598,9.88e-07,291;UBERON:0010317,9.88e-07,291;UBERON:0002532,9.88e-07,291 | |||
|phase1_expression=120.912379564119,115.859835336268,124.214792353343,93.1589770825037,71.6280893823276,76.5529479918218,109.09710315811,110.271318219106,96.8626408403467,85.9016811601716,224.124320407186,181.162573078409,79.2659379581483,82.0877578714386,83.943659977547,100.630207892743,97.2391010598124,109.465371379308,95.5687602231999,124.346167976823,92.7822295548171,99.8866969080906,156.719873483361,185.911195285939,187.427382631878,194.664635834992,195.56594625622,173.885284777512,221.757330505588,162.811463824915,207.31802746271,69.8533740805594,71.9625801473947,126.785344812351,108.608209026479,132.655246996077,121.072428263585,160.716146202973,276.592711961425,193.703785270305,141.175557127443,151.636097660775,153.906781910876,156.489744743643,147.402057993174,145.919667968537,100.146092076549,147.385005713182,152.242524634989,166.820853405735,129.48744000346,130.814833572124,88.4214333924271,75.4376627691798,80.6625117941914,123.741788733291,111.748041576115,111.385171931928,148.297965810085,151.291420071801,162.894670701088,131.471678442823,114.719028698337,139.034506319976,172.062747086654,153.463704828358,123.734845644101,102.202069215534,119.243054154749,127.715617661779,134.187325342182,152.537625671631,157.258401157549,139.884492703478,156.899036056853,136.044380418283,135.442533629248,151.820244983288,158.829155386956,157.340341262121,162.48205503788,150.543964090904,203.245223273005,171.079833449631,139.352001972451,115.789034091151,140.236105587116,136.071595452469,179.243899619647,133.232660468263,79.7127343929614,226.291479646105,190.39197343817,195.912258564528,163.093880779365,155.017302935678,158.140417068353,125.095856772294,135.8680804073,134.269038313929,136.19558692405,115.493829672886,35.6727335589304,56.8853362522665,208.69736353481,195.593816146776,206.253973566032,124.802980532933,114.968420339344,103.612613067248,105.826049327343,139.749654545273,142.520377304244,180.867168663147,104.30118322937,118.754928806543,82.5631192232809,81.6986366597501,88.4610551949874,86.7070315718113,83.4780939780288,105.702805183478,96.9237158334235,113.013387646457,91.7376575842933,141.778665640768,112.146956537541,274.755450794981,156.423449526943,142.001526155772,124.897664569485,99.14128381705,144.274185759589,138.086346958378,150.438544261122,128.981804138867,73.3243419722277,80.4913099847302,126.866824733705,108.587997637421,130.771045177517,139.550577391118,131.085230498294,115.439890462158,83.3447114603766,103.387772269874,96.2316711228415,91.8396966123506,126.753979844511,107.979571775825,105.570674498369,111.351432073208,103.155529462697,108.306423788394,113.797521433593,93.9441739383288,211.366169381284,217.973677326164,129.294392224995,107.498275945925,122.422603310132,119.921332933036,107.955599426856,104.088278594377,115.854601778421,103.245071469181,102.212165933255,95.6308153987118,97.0903114489535,115.245559783525,98.903947645944,113.743590216909,133.925570327541,113.270217433754,131.220927904015,109.902126021076,214.772208939469,127.994074265155,121.147726304013,111.00912914929,90.5938253094316,91.5643201789975,98.2910953794327,105.765448118583,115.310561955316,110.018901755639,113.603514377722,96.6928454119993,97.8719717337983,124.935897802937,148.919116363664,117.692492493331,212.617716968405,118.704204601508,91.2932658951951,99.789150644204,92.5153363789575,71.6788079279056,78.0338868113335,81.9236321286792,110.213106944645,96.496582186848,155.93408184784,107.948783398313,98.6726155468279,103.211709584648,100.618620208697,86.3414231913652,95.230068566251,81.7057030360302,81.7161542946178,123.552635934637,77.6348315247715,135.087164003667,122.318767860908,165.186586177411,168.992363537641,125.435315554475,99.2124631194667,129.422634239241,118.149607920469,119.161050214182,113.355389923347,107.706523535088,99.5022418903537,61.076831779491,89.5367618523165,83.0492586182906,72.0735554331842,85.3727869668995,102.402194246476,89.5377672619557,209.599884675588,265.42597370353,140.152817810425,119.480611149949,169.541423027108,152.609615943049,98.5249021713819,148.95784705058,107.588302820944,99.5618797956428,94.3554482069659,98.694113554404,91.7930537219464,65.6737551430091,87.0343008601023,92.9373628157972,90.5209011497539,125.957956037348,88.7125532551679,85.2934241566153,70.5300534000984,77.5359577970917,37.1686387351896,107.309041180502,116.999216545359,117.68956976768,96.2684170791319,81.4703142051408,65.8992147578964,71.2526109775911,71.2994756769443,66.3677191665214,72.7388399167491,52.5991270565753,97.3657272455834,124.602277069667,143.588138998857,111.026584146365,114.916471400193,98.1028496811388,94.9447848874238,56.3260155862009,103.020879839969,73.5057285897456,100.781477911118,93.3256191648777,83.800037455175,91.6756458907969,98.004694426575,95.8582854511158,93.2738677215522,176.710312816016,97.9090146971696,102.574273377722,104.264518909148,97.9515976424393,88.0310826523402,100.433618037663,87.1989345868478,88.5892693208755,79.3267849637393,179.478076186841,109.926757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| |||
|short_description=p1@Pomp | |||
}} |
Latest revision as of 18:19, 25 September 2015
Short description: | p1@Pomp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pomp_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000031654, NM_025624, uc009aoj.1, uc009aok.1_5end |
EntrezGene: | Pomp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.88e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.88e-08 | 23 |
somatic stem cell | 8.30e-08 | 91 |
multi fate stem cell | 8.30e-08 | 91 |
stem cell | 2.67e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.08e-09 | 34 |
regional part of nervous system | 1.12e-09 | 54 |
neural tube | 3.61e-09 | 52 |
neural rod | 3.61e-09 | 52 |
future spinal cord | 3.61e-09 | 52 |
neural keel | 3.61e-09 | 52 |
nervous system | 7.48e-09 | 75 |
brain grey matter | 1.66e-08 | 29 |
regional part of telencephalon | 1.66e-08 | 29 |
telencephalon | 1.66e-08 | 29 |
central nervous system | 2.97e-08 | 73 |
structure with developmental contribution from neural crest | 1.06e-07 | 92 |
brain | 1.15e-07 | 47 |
future brain | 1.15e-07 | 47 |
regional part of brain | 1.49e-07 | 46 |
embryonic structure | 1.57e-07 | 294 |
neurectoderm | 1.58e-07 | 64 |
neural plate | 1.58e-07 | 64 |
presumptive neural plate | 1.58e-07 | 64 |
anterior neural tube | 2.99e-07 | 40 |
ectoderm-derived structure | 3.32e-07 | 95 |
ectoderm | 3.32e-07 | 95 |
presumptive ectoderm | 3.32e-07 | 95 |
regional part of forebrain | 5.38e-07 | 39 |
forebrain | 5.38e-07 | 39 |
future forebrain | 5.38e-07 | 39 |
germ layer | 9.88e-07 | 291 |
germ layer / neural crest | 9.88e-07 | 291 |
embryonic tissue | 9.88e-07 | 291 |
presumptive structure | 9.88e-07 | 291 |
germ layer / neural crest derived structure | 9.88e-07 | 291 |
epiblast (generic) | 9.88e-07 | 291 |