FFCP PHASE1:Mm9::chr9:41932359..41932416,-: Difference between revisions
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{{FFCP|EntrezGene=20660|HGNC=|MCL_coexpression_id=3|UniProt=O88307|association_with_transcript=0bp_to_ENSMUST00000060989,NM_011436,uc009pap.1_5end|description=CAGE_peak_2_at_Sorl1_5end|id=chr9:41932359..41932416,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!1.47e-13!50;UBERON:0006238!1.47e-13!50;UBERON:0001049!1.92e-13!52;UBERON:0005068!1.92e-13!52;UBERON:0006241!1.92e-13!52;UBERON:0007135!1.92e-13!52;UBERON:0002616!4.54e-13!49;UBERON:0002020!2.36e-10!34;UBERON:0000033!3.31e-10!63;UBERON:0003080!3.76e-10!40;UBERON:0002780!1.10e-09!39;UBERON:0001890!1.10e-09!39;UBERON:0006240!1.10e-09!39;UBERON:0002791!2.51e-09!29;UBERON:0003528!2.51e-09!29;UBERON:0001893!2.51e-09!29;UBERON:0001017!4.40e-09!73;UBERON:0005743!4.40e-09!73;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21;UBERON:0000073!5.21e-08!75;UBERON:0001016!5.21e-08!75;UBERON:0003056!6.83e-08!49;UBERON:0002346!1.77e-07!71;UBERON:0003075!1.77e-07!71;UBERON:0007284!1.77e-07!71;UBERON:0002619!9.30e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.47e-14,54;UBERON:0001049,2.11e-13,52;UBERON:0005068,2.11e-13,52;UBERON:0006241,2.11e-13,52;UBERON:0007135,2.11e-13,52;UBERON:0000955,3.39e-12,47;UBERON:0006238,3.39e-12,47;UBERON:0002616,1.01e-11,46;UBERON:0002020,2.33e-10,34;UBERON:0003080,3.71e-10,40;UBERON:0002780,1.08e-09,39;UBERON:0001890,1.08e-09,39;UBERON:0006240,1.08e-09,39;UBERON:0002346,1.39e-09,64;UBERON:0003075,1.39e-09,64;UBERON:0007284,1.39e-09,64;UBERON:0003528,2.48e-09,29;UBERON:0002791,2.48e-09,29;UBERON:0001893,2.48e-09,29;UBERON:0001017,5.23e-09,73;UBERON:0010371,1.48e-08,73;UBERON:0000956,2.81e-08,21;UBERON:0001869,2.81e-08,21;UBERON:0000203,2.81e-08,21;UBERON:0001016,6.08e-08,75;UBERON:0003056,6.76e-08,49;UBERON:0002619,9.23e-07,17|phase1_expression=2.7225304007815,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,3.02182689441402,1.86890112476421,32.0225842135109,5.20918271961167,7.95819389494778,1.19852577757853,3.03134204182278,13.8672591244277,27.1877451523082,28.9805492779627,35.0282212584399,13.9912375625629,102.367472658748,111.748263388677,158.297340120665,18.1142208021779,1.09220046320974,0,5.43974237497583,4.35877634027623,0.57423196411502,2.58457197695445,2.15471232685889,1.71021077510736,2.77233142735924,2.88249663851896,0,0,0,12.4206196493048,9.30914014007557,11.8418226632174,427.73932661312,213.304549054998,245.009112179738,606.466664159976,566.244707030551,445.698504082599,0.503587271902309,0.405507724878058,0.367093504323363,0.782391344348039,23.9827672018491,8.78744730937887,16.7209713203884,4.19959264876088,7.18762821824858,99.9984332104109,30.4652099644765,37.3064117048135,0,0.573066879877513,0.515672092277442,5.46254444320914,5.81890077199236,8.87363964908651,1.35537812827653,0.889294796111139,10.7987966073768,8.89979726310277,9.2362414942993,17.9760066311043,35.7323023949046,23.1227835447905,21.3309382564071,18.2982716375702,13.139945282575,11.0434270475807,17.0262210908786,14.0892842396807,14.7075005857603,23.1243350098716,29.6234624357635,30.8749131845049,5.14356522147756,5.85520919055422,8.85552729946492,36.5729728691809,23.0732670112989,29.6428600687012,18.8562294703147,13.6676813567139,16.7759501242771,1.51452386666368,0.0755715601067855,2.89864488701678,0,0,0,0,0,13.7635531729117,0,0,0,3.80277233397037,0,0,0,3.89683873820185,3.54703811665138,6.57181778519218,12.7885945285347,82.8601227670949,10.2425075954729,4.3371331691534,2.43572382649713,3.22861696158482,1.95939432718409,2.82212897125692,4.77533047052767,1.23597483867187,8.6759614151947,102.614824026185,5.98537344805414,21.6424688091186,18.9101348722737,13.0474232852686,91.9331702616258,89.8526372229722,15.5828803677241,5.99075622529601,6.59893004092748,9.65733725755292,34.0024751448948,31.5675415944852,13.6963243803022,44.1513773288382,42.1930504595045,23.2722609906707,28.3922210368576,4.58277137326423,28.7380102109315,6.31806896084187,45.4554408714784,4.29397461776922,3.67843367093557,3.60124259610698,3.61691562805716,3.81004395247436,2.69038812598185,5.71580519814346,18.3679393224701,3.23351989399263,3.9712276835242,5.45448484908241,3.72632745126877,3.05851974148158,3.48252166522167,2.26360350048738,3.98068533636986,14.7464769335779,10.2939162845886,15.0606654679664,5.17814431338755,3.98694301967864,2.70093092191522,3.07768156260773,2.95146347621106,1.54267112887378,1.62773761325285,0.804820204198858,1.63471479314037,2.13927804887525,3.2833492815819,1.86458261955468,2.63159977365598,3.29325172936576,2.54992195644706,35.7492912559016,6.07137213037778,14.5384264512871,3.17340679996253,4.47905326123991,4.41249676534833,6.95884291139304,6.45387278794696,6.67134131534611,7.41879941838981,11.8632265386128,5.76446341534038,10.8074139784116,7.95825888164603,11.1129529657898,17.0775687644302,12.752144942607,12.5459002150251,3.41402221715547,7.65465034485183,12.3978509240388,6.3131911632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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20660 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=O88307 | |||
|association_with_transcript=0bp_to_ENSMUST00000060989,NM_011436,uc009pap.1_5end | |||
|cluster_id=chr9:41932359..41932416,- | |||
|description=CAGE_peak_2_at_Sorl1_5end | |||
|id=chr9:41932359..41932416,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.47e-13!50;UBERON:0006238!1.47e-13!50;UBERON:0001049!1.92e-13!52;UBERON:0005068!1.92e-13!52;UBERON:0006241!1.92e-13!52;UBERON:0007135!1.92e-13!52;UBERON:0002616!4.54e-13!49;UBERON:0002020!2.36e-10!34;UBERON:0000033!3.31e-10!63;UBERON:0003080!3.76e-10!40;UBERON:0002780!1.10e-09!39;UBERON:0001890!1.10e-09!39;UBERON:0006240!1.10e-09!39;UBERON:0002791!2.51e-09!29;UBERON:0003528!2.51e-09!29;UBERON:0001893!2.51e-09!29;UBERON:0001017!4.40e-09!73;UBERON:0005743!4.40e-09!73;UBERON:0000956!2.84e-08!21;UBERON:0001869!2.84e-08!21;UBERON:0000203!2.84e-08!21;UBERON:0000073!5.21e-08!75;UBERON:0001016!5.21e-08!75;UBERON:0003056!6.83e-08!49;UBERON:0002346!1.77e-07!71;UBERON:0003075!1.77e-07!71;UBERON:0007284!1.77e-07!71;UBERON:0002619!9.30e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.47e-14,54;UBERON:0001049,2.11e-13,52;UBERON:0005068,2.11e-13,52;UBERON:0006241,2.11e-13,52;UBERON:0007135,2.11e-13,52;UBERON:0000955,3.39e-12,47;UBERON:0006238,3.39e-12,47;UBERON:0002616,1.01e-11,46;UBERON:0002020,2.33e-10,34;UBERON:0003080,3.71e-10,40;UBERON:0002780,1.08e-09,39;UBERON:0001890,1.08e-09,39;UBERON:0006240,1.08e-09,39;UBERON:0002346,1.39e-09,64;UBERON:0003075,1.39e-09,64;UBERON:0007284,1.39e-09,64;UBERON:0003528,2.48e-09,29;UBERON:0002791,2.48e-09,29;UBERON:0001893,2.48e-09,29;UBERON:0001017,5.23e-09,73;UBERON:0010371,1.48e-08,73;UBERON:0000956,2.81e-08,21;UBERON:0001869,2.81e-08,21;UBERON:0000203,2.81e-08,21;UBERON:0001016,6.08e-08,75;UBERON:0003056,6.76e-08,49;UBERON:0002619,9.23e-07,17 | |||
|phase1_expression=2.7225304007815,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,3.02182689441402,1.86890112476421,32.0225842135109,5.20918271961167,7.95819389494778,1.19852577757853,3.03134204182278,13.8672591244277,27.1877451523082,28.9805492779627,35.0282212584399,13.9912375625629,102.367472658748,111.748263388677,158.297340120665,18.1142208021779,1.09220046320974,0,5.43974237497583,4.35877634027623,0.57423196411502,2.58457197695445,2.15471232685889,1.71021077510736,2.77233142735924,2.88249663851896,0,0,0,12.4206196493048,9.30914014007557,11.8418226632174,427.73932661312,213.304549054998,245.009112179738,606.466664159976,566.244707030551,445.698504082599,0.503587271902309,0.405507724878058,0.367093504323363,0.782391344348039,23.9827672018491,8.78744730937887,16.7209713203884,4.19959264876088,7.18762821824858,99.9984332104109,30.4652099644765,37.3064117048135,0,0.573066879877513,0.515672092277442,5.46254444320914,5.81890077199236,8.87363964908651,1.35537812827653,0.889294796111139,10.7987966073768,8.89979726310277,9.2362414942993,17.9760066311043,35.7323023949046,23.1227835447905,21.3309382564071,18.2982716375702,13.139945282575,11.0434270475807,17.0262210908786,14.0892842396807,14.7075005857603,23.1243350098716,29.6234624357635,30.8749131845049,5.14356522147756,5.85520919055422,8.85552729946492,36.5729728691809,23.0732670112989,29.6428600687012,18.8562294703147,13.6676813567139,16.7759501242771,1.51452386666368,0.0755715601067855,2.89864488701678,0,0,0,0,0,13.7635531729117,0,0,0,3.80277233397037,0,0,0,3.89683873820185,3.54703811665138,6.57181778519218,12.7885945285347,82.8601227670949,10.2425075954729,4.3371331691534,2.43572382649713,3.22861696158482,1.95939432718409,2.82212897125692,4.77533047052767,1.23597483867187,8.6759614151947,102.614824026185,5.98537344805414,21.6424688091186,18.9101348722737,13.0474232852686,91.9331702616258,89.8526372229722,15.5828803677241,5.99075622529601,6.59893004092748,9.65733725755292,34.0024751448948,31.5675415944852,13.6963243803022,44.1513773288382,42.1930504595045,23.2722609906707,28.3922210368576,4.58277137326423,28.7380102109315,6.31806896084187,45.4554408714784,4.29397461776922,3.67843367093557,3.60124259610698,3.61691562805716,3.81004395247436,2.69038812598185,5.71580519814346,18.3679393224701,3.23351989399263,3.9712276835242,5.45448484908241,3.72632745126877,3.05851974148158,3.48252166522167,2.26360350048738,3.98068533636986,14.7464769335779,10.2939162845886,15.0606654679664,5.17814431338755,3.98694301967864,2.70093092191522,3.07768156260773,2.95146347621106,1.54267112887378,1.62773761325285,0.804820204198858,1.63471479314037,2.13927804887525,3.2833492815819,1.86458261955468,2.63159977365598,3.29325172936576,2.54992195644706,35.7492912559016,6.07137213037778,14.5384264512871,3.17340679996253,4.47905326123991,4.41249676534833,6.95884291139304,6.45387278794696,6.67134131534611,7.41879941838981,11.8632265386128,5.76446341534038,10.8074139784116,7.95825888164603,11.1129529657898,17.0775687644302,12.752144942607,12.5459002150251,3.41402221715547,7.65465034485183,12.3978509240388,6.31319116320474,8.14600446104028,9.46833568519301,11.1928670709935,20.0749801252259,21.9798218977925,20.6073263749407,0.889357881261447,2.33583148002532,2.35870794135844,3.14806957338795,6.8972441272091,6.51178331331525,12.2220408855082,10.0693648107784,9.24170792617702,6.31491250332587,5.75072826109418,5.95425516269605,3.12037673114561,1.76805214562978,0.717589654087649,0.964887042726734,40.8304550268196,6.63219941196697,9.4519686336375,9.16623463186016,12.4385831592906,12.5629693081362,14.9967493758189,13.6593553500459,13.8718926813448,13.5093460685753,15.3076577911188,20.1551877100358,28.4930220078728,22.8545512558788,3.01582567878545,3.80733978673097,6.88469982226651,12.9690270763224,34.1972756673997,34.4602358581077,0,3.53459298086122,3.15508219416257,3.12350995437311,3.01592756825919,1.19484398976276,0.891194696329576,1.69845918473299,2.02405350837447,2.04579100537918,1.58115111178609,31.8108103257589,8.51640511249612,6.94455854302295,5.53815661802159,10.8880281161873,3.98235415019888,5.58395463156457,8.76738315197778,6.97838795096823,8.26845300066164,4.30409207121498,7.23599220871019,7.63420831902762,3.56497378384721,4.74055136903724,6.32511651449993,11.3449097573006,14.6389030474129,8.46287141947158,6.85601024048599,5.14408884075822,5.67488747655275,11.9507107793387,12.6702745863633,10.0473433207818,2.3467170806371,1.27099242518292,19.1859706307817,4.78170133530292,6.94297034792394,8.7453741145826,6.56547892017251,7.71462228801788,10.7847909553045,42.0915435563857,53.4825856897279,23.3217160798441,39.2612398023789,13.5625289043378,27.6122339996471,30.656275209674,5.43930975980337,6.01791244991729,7.73919853304773,9.54670618015114,8.38290382990009,9.55601495496189,9.82848601478391,11.0816796887668,9.38959024108564,11.1937407499401,12.3980183588004,20.6787194167383,22.1641604328966,28.5816084019986,0.56369293868419,1.49516546043979,0.992750942742586,2.527865448472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| |||
|short_description=p2@Sorl1 | |||
}} |
Latest revision as of 15:51, 26 September 2015
Short description: | p2@Sorl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sorl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000060989, NM_011436, uc009pap.1_5end |
EntrezGene: | Sorl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.47e-14 | 54 |
neural tube | 2.11e-13 | 52 |
neural rod | 2.11e-13 | 52 |
future spinal cord | 2.11e-13 | 52 |
neural keel | 2.11e-13 | 52 |
brain | 3.39e-12 | 47 |
future brain | 3.39e-12 | 47 |
regional part of brain | 1.01e-11 | 46 |
gray matter | 2.33e-10 | 34 |
anterior neural tube | 3.71e-10 | 40 |
regional part of forebrain | 1.08e-09 | 39 |
forebrain | 1.08e-09 | 39 |
future forebrain | 1.08e-09 | 39 |
neurectoderm | 1.39e-09 | 64 |
neural plate | 1.39e-09 | 64 |
presumptive neural plate | 1.39e-09 | 64 |
brain grey matter | 2.48e-09 | 29 |
regional part of telencephalon | 2.48e-09 | 29 |
telencephalon | 2.48e-09 | 29 |
central nervous system | 5.23e-09 | 73 |
ecto-epithelium | 1.48e-08 | 73 |
cerebral cortex | 2.81e-08 | 21 |
cerebral hemisphere | 2.81e-08 | 21 |
pallium | 2.81e-08 | 21 |
nervous system | 6.08e-08 | 75 |
pre-chordal neural plate | 6.76e-08 | 49 |
regional part of cerebral cortex | 9.23e-07 | 17 |