FFCP PHASE1:Mm9::chrX:7215800..7215823,+: Difference between revisions
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{{FFCP|EntrezGene=20977|HGNC=|MCL_coexpression_id=1|UniProt=F8WGK2|association_with_transcript=0bp_to_ENSMUST00000116638_5end|description=CAGE_peak_1_at_Syp_5end|id=chrX:7215800..7215823,+|ontology_enrichment_celltype=CL:0000540!8.89e-15!33;CL:0000047!8.89e-15!33;CL:0000031!8.89e-15!33;CL:0000404!8.89e-15!33;CL:0000221!2.23e-13!44;CL:0000133!2.23e-13!44;CL:0002319!2.91e-13!43;CL:0000117!2.57e-12!23;CL:0000337!2.57e-12!23;CL:0000393!8.25e-09!39;CL:0000211!8.25e-09!39;CL:0000055!5.24e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.58e-15,33;CL:0000047,3.58e-15,33;CL:0000031,3.58e-15,33;CL:0000404,3.58e-15,33;CL:0000221,9.89e-14,44;CL:0000133,9.89e-14,44;CL:0002319,1.30e-13,43;CL:0000117,1.23e-12,23;CL:0000337,1.23e-12,23;CL:0000393,1.00e-09,39;CL:0000211,1.00e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.70e-33!102;UBERON:0000924!3.70e-33!102;UBERON:0006601!3.70e-33!102;UBERON:0000073!5.91e-32!75;UBERON:0001016!5.91e-32!75;UBERON:0001017!1.04e-31!73;UBERON:0005743!1.04e-31!73;UBERON:0002346!3.21e-31!71;UBERON:0003075!3.21e-31!71;UBERON:0007284!3.21e-31!71;UBERON:0000033!3.17e-26!63;UBERON:0001049!9.91e-25!52;UBERON:0005068!9.91e-25!52;UBERON:0006241!9.91e-25!52;UBERON:0007135!9.91e-25!52;UBERON:0000955!8.33e-24!50;UBERON:0006238!8.33e-24!50;UBERON:0002616!3.45e-23!49;UBERON:0003056!7.79e-22!49;UBERON:0003080!3.61e-19!40;UBERON:0002780!1.58e-18!39;UBERON:0001890!1.58e-18!39;UBERON:0006240!1.58e-18!39;UBERON:0002020!1.11e-17!34;UBERON:0002791!5.69e-15!29;UBERON:0003528!5.69e-15!29;UBERON:0001893!5.69e-15!29;UBERON:0007811!2.39e-12!86;UBERON:0000956!8.82e-11!21;UBERON:0001869!8.82e-11!21;UBERON:0000203!8.82e-11!21;UBERON:0000153!5.95e-10!94;UBERON:0002619!4.61e-09!17;UBERON:0000468!1.16e-08!333;UBERON:0002021!3.81e-08!10;UBERON:0000411!3.81e-08!10;UBERON:0001950!3.81e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.24e-33,75;UBERON:0001017,1.30e-32,73;UBERON:0004121,6.54e-31,95;UBERON:0000924,6.54e-31,95;UBERON:0006601,6.54e-31,95;UBERON:0002346,8.20e-30,64;UBERON:0003075,8.20e-30,64;UBERON:0007284,8.20e-30,64;UBERON:0000073,6.90e-27,54;UBERON:0001049,2.00e-25,52;UBERON:0005068,2.00e-25,52;UBERON:0006241,2.00e-25,52;UBERON:0007135,2.00e-25,52;UBERON:0010371,6.61e-25,73;UBERON:0003056,1.93e-22,49;UBERON:0000955,2.11e-22,47;UBERON:0006238,2.11e-22,47;UBERON:0002616,8.86e-22,46;UBERON:0003080,1.07e-19,40;UBERON:0010314,2.84e-19,92;UBERON:0002780,4.91e-19,39;UBERON:0001890,4.91e-19,39;UBERON:0006240,4.91e-19,39;UBERON:0002020,3.67e-18,34;UBERON:0003528,2.26e-15,29;UBERON:0002791,2.26e-15,29;UBERON:0001893,2.26e-15,29;UBERON:0000956,4.68e-11,21;UBERON:0001869,4.68e-11,21;UBERON:0000203,4.68e-11,21;UBERON:0002619,2.75e-09,17;UBERON:0002021,2.42e-08,10;UBERON:0000411,2.42e-08,10;UBERON:0001950,2.42e-08,10|phase1_expression=25.3035178425574,0.348975407639361,0,0.30246421130683,0.500895729946347,5.20425742926858,10.0453435456076,6.71441281896197,0.563154888606667,3.27690336850791,3.4243593645101,4.46724090373884,0.684802919724823,0.699363219351979,0,0,0,0.315462165358238,0,0.42438965179803,193.133311933079,0,0,4.47978783821539,2.75291137280604,0,0.430761996159075,0.861884930743556,2.47030445293286,2.01624103807945,1.33038306393183,0,0,0,0,0.332469290716985,0.408338712524738,1.67412652294763,0.7813353445238,0.523523743973798,0.588231488031014,0,0.485510353031154,0,0,0.183546752161682,5.47673941043627,13.0815093828268,2.85592037554813,2.72201858703997,2.79972843250725,5.75010257459886,0,0,0,0.257259436035947,0,0,240.958904883781,323.213488335212,312.478881928546,1.0165335962074,1.77858959222228,10.3488467487361,22.7439263390404,14.9200824138681,13.7816050838466,13.4476406862544,77.8708988436667,108.544774418679,99.9043566419065,874.377663260043,907.327966229228,102.034835746057,88.2736788077957,147.994224644213,1511.89104612161,1338.67405248511,1339.44896999444,251.375264413749,250.676143470602,224.513662709964,1326.11924525656,1229.63630291922,1055.68309388998,676.467232247541,632.130262748017,311.100675082427,16.053952986635,42.7735030204406,0.579728977403356,0.860423876981386,0.679971333707751,1.61910957491345,0,0.448026887097336,61.6551004378391,0,0,0,28.8729010542195,0,0,0,0,0.253359865475099,0,31.0580152835843,2.58937883647172,78.6743337043571,48.0554355142196,73.6806457515382,50.7354093963329,65.5643486403908,63.0275470247378,25.1333182659351,3.21353458054686,12.7247434089522,0.884610551949874,0.485300549842228,0,0,11.1835056730873,835.303613873944,776.837835571105,6.64188343542338,0.11981512450592,0.599902730993408,0,1356.50403045007,1155.64652271985,287.245848930008,1727.46609407084,1664.19619630579,1503.55429043298,1384.24245649411,1.42575109390443,0.124406970610093,0,203.286832786334,5.33493816147085,31.2666862029523,49.8772099560817,55.3086681457074,95.1150258135563,160.270264076347,200.42798883326,679.613754931394,0.862271971731369,0.189106080167819,1.05570674498369,1.97276159184817,1.11218899690239,1.74126083261083,0.411564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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20977 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=F8WGK2 | |||
|association_with_transcript=0bp_to_ENSMUST00000116638_5end | |||
|cluster_id=chrX:7215800..7215823,+ | |||
|description=CAGE_peak_1_at_Syp_5end | |||
|id=chrX:7215800..7215823,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.89e-15!33;CL:0000047!8.89e-15!33;CL:0000031!8.89e-15!33;CL:0000404!8.89e-15!33;CL:0000221!2.23e-13!44;CL:0000133!2.23e-13!44;CL:0002319!2.91e-13!43;CL:0000117!2.57e-12!23;CL:0000337!2.57e-12!23;CL:0000393!8.25e-09!39;CL:0000211!8.25e-09!39;CL:0000055!5.24e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.58e-15,33;CL:0000047,3.58e-15,33;CL:0000031,3.58e-15,33;CL:0000404,3.58e-15,33;CL:0000221,9.89e-14,44;CL:0000133,9.89e-14,44;CL:0002319,1.30e-13,43;CL:0000117,1.23e-12,23;CL:0000337,1.23e-12,23;CL:0000393,1.00e-09,39;CL:0000211,1.00e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.70e-33!102;UBERON:0000924!3.70e-33!102;UBERON:0006601!3.70e-33!102;UBERON:0000073!5.91e-32!75;UBERON:0001016!5.91e-32!75;UBERON:0001017!1.04e-31!73;UBERON:0005743!1.04e-31!73;UBERON:0002346!3.21e-31!71;UBERON:0003075!3.21e-31!71;UBERON:0007284!3.21e-31!71;UBERON:0000033!3.17e-26!63;UBERON:0001049!9.91e-25!52;UBERON:0005068!9.91e-25!52;UBERON:0006241!9.91e-25!52;UBERON:0007135!9.91e-25!52;UBERON:0000955!8.33e-24!50;UBERON:0006238!8.33e-24!50;UBERON:0002616!3.45e-23!49;UBERON:0003056!7.79e-22!49;UBERON:0003080!3.61e-19!40;UBERON:0002780!1.58e-18!39;UBERON:0001890!1.58e-18!39;UBERON:0006240!1.58e-18!39;UBERON:0002020!1.11e-17!34;UBERON:0002791!5.69e-15!29;UBERON:0003528!5.69e-15!29;UBERON:0001893!5.69e-15!29;UBERON:0007811!2.39e-12!86;UBERON:0000956!8.82e-11!21;UBERON:0001869!8.82e-11!21;UBERON:0000203!8.82e-11!21;UBERON:0000153!5.95e-10!94;UBERON:0002619!4.61e-09!17;UBERON:0000468!1.16e-08!333;UBERON:0002021!3.81e-08!10;UBERON:0000411!3.81e-08!10;UBERON:0001950!3.81e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.24e-33,75;UBERON:0001017,1.30e-32,73;UBERON:0004121,6.54e-31,95;UBERON:0000924,6.54e-31,95;UBERON:0006601,6.54e-31,95;UBERON:0002346,8.20e-30,64;UBERON:0003075,8.20e-30,64;UBERON:0007284,8.20e-30,64;UBERON:0000073,6.90e-27,54;UBERON:0001049,2.00e-25,52;UBERON:0005068,2.00e-25,52;UBERON:0006241,2.00e-25,52;UBERON:0007135,2.00e-25,52;UBERON:0010371,6.61e-25,73;UBERON:0003056,1.93e-22,49;UBERON:0000955,2.11e-22,47;UBERON:0006238,2.11e-22,47;UBERON:0002616,8.86e-22,46;UBERON:0003080,1.07e-19,40;UBERON:0010314,2.84e-19,92;UBERON:0002780,4.91e-19,39;UBERON:0001890,4.91e-19,39;UBERON:0006240,4.91e-19,39;UBERON:0002020,3.67e-18,34;UBERON:0003528,2.26e-15,29;UBERON:0002791,2.26e-15,29;UBERON:0001893,2.26e-15,29;UBERON:0000956,4.68e-11,21;UBERON:0001869,4.68e-11,21;UBERON:0000203,4.68e-11,21;UBERON:0002619,2.75e-09,17;UBERON:0002021,2.42e-08,10;UBERON:0000411,2.42e-08,10;UBERON:0001950,2.42e-08,10 | |||
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| |||
|short_description=p1@Syp | |||
}} |
Latest revision as of 00:25, 2 October 2015
Short description: | p1@Syp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Syp_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000116638_5end |
EntrezGene: | Syp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.58e-15 | 33 |
neuronal stem cell | 3.58e-15 | 33 |
neuroblast | 3.58e-15 | 33 |
electrically signaling cell | 3.58e-15 | 33 |
ectodermal cell | 9.89e-14 | 44 |
neurectodermal cell | 9.89e-14 | 44 |
neural cell | 1.30e-13 | 43 |
CNS neuron (sensu Vertebrata) | 1.23e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.23e-12 | 23 |
electrically responsive cell | 1.00e-09 | 39 |
electrically active cell | 1.00e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.24e-33 | 75 |
central nervous system | 1.30e-32 | 73 |
ectoderm-derived structure | 6.54e-31 | 95 |
ectoderm | 6.54e-31 | 95 |
presumptive ectoderm | 6.54e-31 | 95 |
neurectoderm | 8.20e-30 | 64 |
neural plate | 8.20e-30 | 64 |
presumptive neural plate | 8.20e-30 | 64 |
regional part of nervous system | 6.90e-27 | 54 |
neural tube | 2.00e-25 | 52 |
neural rod | 2.00e-25 | 52 |
future spinal cord | 2.00e-25 | 52 |
neural keel | 2.00e-25 | 52 |
ecto-epithelium | 6.61e-25 | 73 |
pre-chordal neural plate | 1.93e-22 | 49 |
brain | 2.11e-22 | 47 |
future brain | 2.11e-22 | 47 |
regional part of brain | 8.86e-22 | 46 |
anterior neural tube | 1.07e-19 | 40 |
structure with developmental contribution from neural crest | 2.84e-19 | 92 |
regional part of forebrain | 4.91e-19 | 39 |
forebrain | 4.91e-19 | 39 |
future forebrain | 4.91e-19 | 39 |
gray matter | 3.67e-18 | 34 |
brain grey matter | 2.26e-15 | 29 |
regional part of telencephalon | 2.26e-15 | 29 |
telencephalon | 2.26e-15 | 29 |
cerebral cortex | 4.68e-11 | 21 |
cerebral hemisphere | 4.68e-11 | 21 |
pallium | 4.68e-11 | 21 |
regional part of cerebral cortex | 2.75e-09 | 17 |
occipital lobe | 2.42e-08 | 10 |
visual cortex | 2.42e-08 | 10 |
neocortex | 2.42e-08 | 10 |