CL:0000586: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=germ cell | |name=germ cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:35, 12 September 2014
| Name: | germ cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The reproductive cell in multicellular organisms." [MESH:A.05.360.490] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000039(germ line cell) |
|---|
Children
| is a: | FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II) |
|---|---|
| derives from: | FF:0101575 (choriocarcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10618-108G6 (choriocarcinoma cell line:T3M-3)
- 10785-110H2 (choriocarcinoma cell line:SCH)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
- 10799-110I7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000586 (germ cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.99e-171 | FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205 | p3@DPPA3 |
| 1.99e-171 | FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205 | p3@DPPA3 |
| 5.52e-144 | FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2 | p3@TRIM60 |
| 5.52e-144 | FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2 | p3@TRIM60 |
| 9.03e-144 | FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3 | p4@DNMT3L |
| 9.03e-144 | FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3 | p4@DNMT3L |
| 6.94e-140 | FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcde | p2@A2ML1-AS1 |
| 6.94e-140 | FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcde | p2@A2ML1-AS1 |
| 1.01e-125 | FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864 | p2@DPPA3 |
| 1.01e-125 | FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864 | p2@DPPA3 |
| 5.61e-117 | FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39 | p1@A2ML1-AS1 |
| 5.61e-117 | FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39 | p1@A2ML1-AS1 |
| 7.13e-117 | FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783a | p1@TRIM60 |
| 7.13e-117 | FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783a | p1@TRIM60 |
| 9.06e-117 | FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaee | p2@TRIM60 |
| 9.06e-117 | FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaee | p2@TRIM60 |
| 1.15e-116 | FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923 | p@chr3:9895464..9895477, - |
| 1.15e-116 | FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923 | p@chr3:9895464..9895477, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:92406327..92406341, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:65786044..65786055, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr12:32717043..32717051, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:233989556..233989568, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883856..51883866, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0 | p2@BX538205 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr4:779349..779383, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755221..71755234, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr6:6032547..6032560, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0 | p5@LRRC6 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:40431300..40431312, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr21:27478988..27478996, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883915..51883934, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr16:9069001..9069012, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:40431284..40431296, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755206..71755213, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr7:2309320..2309348, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr21:27478934..27478945, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr4:779349..779383, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:233989556..233989568, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883879..51883908, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0 | p11@PPM1N |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0 | p3@KHDC1L |
| 3.15e-112 | FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr10:48320905..48320918, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755236..71755242, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0 | p5@NANOGP1 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0 | p6@CNR2 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0 | p6@LRRC6 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr6:35511496..35511503, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr6:6032547..6032560, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:40431300..40431312, - |
| 3.15e-112 | FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr15:33905298..33905312, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755221..71755234, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr21:27478988..27478996, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr11:107782394..107782402, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0 | p11@PPM1N |
| 3.15e-112 | FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883915..51883934, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:38709054..38709062, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr10:48320905..48320918, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr6:35511496..35511503, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr16:9069001..9069012, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr12:32717031..32717041, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:227034858..227034868, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0 | p3@KHDC1L |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0 | p5@NANOGP1 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755236..71755242, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0 | p6@CNR2 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:65786044..65786055, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr15:33905298..33905312, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:92406327..92406341, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883856..51883866, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0 | p5@LRRC6 |
| 3.15e-112 | FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr12:32717043..32717051, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0 | p2@BX538205 |
| 3.15e-112 | FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr11:107782394..107782402, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:227034858..227034868, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr12:32717031..32717041, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr2:71755206..71755213, + |
| 3.15e-112 | FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0 | p@chr1:38709054..38709062, + |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:40431284..40431296, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr7:2309320..2309348, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr21:27478934..27478945, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0 | p@chr19:51883879..51883908, - |
| 3.15e-112 | FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0 | p6@LRRC6 |
| 3.67e-112 | FFCP PHASE1:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814e | p@chr6:35511483..35511494, + |
| 3.67e-112 | FFCP PHASE2:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814e | p@chr6:35511483..35511494, + |
| 1.28e-101 | FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954 | p2@DNMT3L |
| 1.28e-101 | FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954 | p2@DNMT3L |
| 4.29e-101 | FFCP PHASE2:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245 | p8@PPM1N |
| 4.29e-101 | FFCP PHASE1:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245 | p8@PPM1N |
| 7.2e-101 | FFCP PHASE1:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacde | p@chr4:188963120..188963125, + |
| 7.2e-101 | FFCP PHASE2:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacde | p@chr4:188963120..188963125, + |
| 5.5e-100 | FFCP PHASE1:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581 | p@chr3:48519267..48519301, - |
| 5.5e-100 | FFCP PHASE2:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581 | p@chr3:48519267..48519301, - |
| 1.18e-92 | FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333b | p1@DNMT3L |
| 1.18e-92 | FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333b | p1@DNMT3L |
| 3.52e-90 | FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_1ac356bdc84f671f720008196132386b | p1@DND1 |
| 3.52e-90 | FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_1ac356bdc84f671f720008196132386b | p@chr5:133764015..133764029, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr12:8045012..8045024,+#_1ac356bdc84f671f720008196132386b | p4@NANOGP1 |
| 3.52e-90 | FFCP PHASE1:Hg19::chr1:65612630..65612670,+#_1ac356bdc84f671f720008196132386b | p@chr1:65612630..65612670, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr11:19838901..19838948,+#_1ac356bdc84f671f720008196132386b | p@chr11:19838901..19838948, + |
| 3.52e-90 | FFCP PHASE2:Hg19::chr4:3931902..3931913,+#_1ac356bdc84f671f720008196132386b | p@chr4:3931902..3931913, + |
