UBERON:0005396: Difference between revisions
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|located_in= | |located_in= | ||
|name=carotid artery segment | |name=carotid artery segment | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:53, 12 September 2014
| Name: | carotid artery segment | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "One of: the common carotid artery, or its branches, the external and internal carotid arteries." [https://sourceforge.net/tracker/?func | ||
| Xrefs: |
| ||
| Synonyms: |
"carotid artery" EXACT [MA:0001925] "subdivision of common carotid artery" EXACT [FMA:70504] | ||
| Comments: | Editor/usage notes: This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries | ||
| Subset: |
grouping_class vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004573(systemic artery) |
|---|
Children
| part of: | CL:0002596 (smooth muscle cell of the carotid artery) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11362-117I3 (Smooth Muscle Cells - Carotid, donor2)
- 11434-118H3 (Smooth Muscle Cells - Carotid, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005396 (carotid artery segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:169985638..169985652,-#_8e5ae667f19c44935451dfb0005dd386 | p@chr1:169985638..169985652, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:169985638..169985652,-#_8e5ae667f19c44935451dfb0005dd386 | p@chr1:169985638..169985652, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr7:120725207..120725210,+#_3ced82e99c07dc96e8333eb4bc2b2b76 | p@chr7:120725207..120725210, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:25046857..25046871,+#_3ced82e99c07dc96e8333eb4bc2b2b76 | p@chr1:25046857..25046871, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr7:120725207..120725210,+#_3ced82e99c07dc96e8333eb4bc2b2b76 | p@chr7:120725207..120725210, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:25046857..25046871,+#_3ced82e99c07dc96e8333eb4bc2b2b76 | p@chr1:25046857..25046871, + |
| 1.87e-31 | FFCP PHASE2:Hg19::chr21:30006488..30006499,+#_6c13b732fd80f0ffe219122fd3fb1e95 | p@chr21:30006488..30006499, + |
| 1.87e-31 | FFCP PHASE1:Hg19::chr21:30006488..30006499,+#_6c13b732fd80f0ffe219122fd3fb1e95 | p@chr21:30006488..30006499, + |
| 2.18e-31 | FFCP PHASE1:Hg19::chr17:80575169..80575172,-#_16647e97c902df034738d15c9e111be4 | p@chr17:80575169..80575172, - |
| 2.18e-31 | FFCP PHASE2:Hg19::chr17:80575169..80575172,-#_16647e97c902df034738d15c9e111be4 | p@chr17:80575169..80575172, - |
| 4.32e-26 | FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_024d5711cd12a0ceed6a2b65817f32f8 | p@chr7:82172409..82172413, + |
| 4.32e-26 | FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_024d5711cd12a0ceed6a2b65817f32f8 | p@chr7:82172409..82172413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_fa96b2b7c25e9b9d1cb98cdb7fc3ec04 | p@chr9:114720368..114720377, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_fa96b2b7c25e9b9d1cb98cdb7fc3ec04 | p@chr9:114720368..114720377, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:120317216..120317220,+#_4169fa4195ef5ed88558837220ec6aa4 | p@chr11:120317216..120317220, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:6806552..6806592,-#_4169fa4195ef5ed88558837220ec6aa4 | p@chr12:6806552..6806592, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_4169fa4195ef5ed88558837220ec6aa4 | p@chr6:136397717..136397720, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:120317216..120317220,+#_4169fa4195ef5ed88558837220ec6aa4 | p@chr11:120317216..120317220, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_4169fa4195ef5ed88558837220ec6aa4 | p@chr6:136397717..136397720, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:6806552..6806592,-#_4169fa4195ef5ed88558837220ec6aa4 | p@chr12:6806552..6806592, - |
| 3.53e-22 | FFCP PHASE1:Hg19::chr19:42724302..42724313,-#_f7c40083f9df332d5ac43f6206b6dca9 | p4@DEDD2 |
| 3.53e-22 | FFCP PHASE2:Hg19::chr19:42724302..42724313,-#_f7c40083f9df332d5ac43f6206b6dca9 | p4@DEDD2 |
| 1.01e-21 | FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_b1e2d2edd6253b97e477996b2a6fcb6d | p@chr21:47539028..47539037, + |
| 1.01e-21 | FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_b1e2d2edd6253b97e477996b2a6fcb6d | p@chr21:47539028..47539037, + |
| 3.81e-21 | FFCP PHASE2:Hg19::chr22:36727653..36727660,-#_639536d8ded5afd7ddd79d315e7d88cf | p@chr22:36727653..36727660, - |
| 3.81e-21 | FFCP PHASE2:Hg19::chr2:216578345..216578377,+#_639536d8ded5afd7ddd79d315e7d88cf | p@chr2:216578345..216578377, + |
| 3.81e-21 | FFCP PHASE2:Hg19::chr3:51429598..51429609,+#_639536d8ded5afd7ddd79d315e7d88cf | p12@RBM15B |
| 3.81e-21 | FFCP PHASE1:Hg19::chr2:216578345..216578377,+#_639536d8ded5afd7ddd79d315e7d88cf | p@chr2:216578345..216578377, + |
| 3.81e-21 | FFCP PHASE1:Hg19::chr22:36727653..36727660,-#_639536d8ded5afd7ddd79d315e7d88cf | p@chr22:36727653..36727660, - |
| 3.81e-21 | FFCP PHASE1:Hg19::chr3:51429598..51429609,+#_639536d8ded5afd7ddd79d315e7d88cf | p12@RBM15B |
| 4.66e-21 | FFCP PHASE1:Hg19::chr1:25046892..25046903,+#_40ea46112a6fa5cd4051c4c93e011849 | p@chr1:25046892..25046903, + |
| 4.66e-21 | FFCP PHASE2:Hg19::chr1:25046892..25046903,+#_40ea46112a6fa5cd4051c4c93e011849 | p@chr1:25046892..25046903, + |
| 5.7e-21 | FFCP PHASE1:Hg19::chr12:65959570..65959573,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p@chr12:65959570..65959573, - |
| 5.7e-21 | FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p6@HYI |
| 5.7e-21 | FFCP PHASE1:Hg19::chr12:57628774..57628785,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p@chr12:57628774..57628785, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr12:65959570..65959573,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p@chr12:65959570..65959573, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr12:57628774..57628785,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p@chr12:57628774..57628785, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_f919f90d06fdd48bb2a101b0f1f4d656 | p6@HYI |
| 2.26e-20 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_6af0de23508766030fa74ff795183fa6 | p@chr2:134548872..134548879, - |
| 2.26e-20 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_6af0de23508766030fa74ff795183fa6 | p@chr2:134548872..134548879, - |
| 1.24e-19 | FFCP PHASE1:Hg19::chr12:122261654..122261658,+#_3d9e86ef4e1da224f650ba45292d7234 | p@chr12:122261654..122261658, + |
| 1.24e-19 | FFCP PHASE2:Hg19::chr12:122261654..122261658,+#_3d9e86ef4e1da224f650ba45292d7234 | p@chr12:122261654..122261658, + |
| 8.4e-19 | FFCP PHASE1:Hg19::chr12:12939901..12939915,-#_2f13e4df1e102264adf3b15548e9f1af | p@chr12:12939901..12939915, - |
| 8.4e-19 | FFCP PHASE2:Hg19::chr12:12939901..12939915,-#_2f13e4df1e102264adf3b15548e9f1af | p@chr12:12939901..12939915, - |
| 3.16e-18 | FFCP PHASE2:Hg19::chr11:122073019..122073034,-#_7e4b829754fd95414e6721c181aeb5bf | p@chr11:122073019..122073034, - |
| 3.16e-18 | FFCP PHASE1:Hg19::chr11:122073019..122073034,-#_7e4b829754fd95414e6721c181aeb5bf | p@chr11:122073019..122073034, - |
| 5.48e-18 | FFCP PHASE1:Hg19::chr4:169022528..169022531,+#_7f9c95a81937b00209a05239d48582a6 | p@chr4:169022528..169022531, + |
| 5.48e-18 | FFCP PHASE2:Hg19::chr4:169022528..169022531,+#_7f9c95a81937b00209a05239d48582a6 | p@chr4:169022528..169022531, + |
| 6.27e-18 | FFCP PHASE2:Hg19::chr2:47109897..47109901,+#_58fbc993111851a5a795c36d856ee9a0 | p@chr2:47109897..47109901, + |
| 6.27e-18 | FFCP PHASE1:Hg19::chr2:47109897..47109901,+#_58fbc993111851a5a795c36d856ee9a0 | p@chr2:47109897..47109901, + |
| 6.48e-18 | FFCP PHASE2:Hg19::chr2:85173188..85173189,-#_c18359f44e81a18963d30499a91c5f83 | p@chr2:85173188..85173189, - |
| 6.48e-18 | FFCP PHASE1:Hg19::chr2:85173188..85173189,-#_c18359f44e81a18963d30499a91c5f83 | p@chr2:85173188..85173189, - |
| 6.48e-18 | FFCP PHASE2:Hg19::chr6:27198375..27198387,-#_c18359f44e81a18963d30499a91c5f83 | p@chr6:27198375..27198387, - |
| 6.48e-18 | FFCP PHASE1:Hg19::chr6:27198375..27198387,-#_c18359f44e81a18963d30499a91c5f83 | p@chr6:27198375..27198387, - |
| 7.67e-18 | FFCP PHASE2:Hg19::chr9:33797953..33797969,+#_aeca0d1ec22e1376758e8b44c99fe5f1 | p@chr9:33797953..33797969, + |
| 7.67e-18 | FFCP PHASE1:Hg19::chr9:33797953..33797969,+#_aeca0d1ec22e1376758e8b44c99fe5f1 | p@chr9:33797953..33797969, + |
| 1.62e-17 | FFCP PHASE2:Hg19::chr16:89595986..89595990,+#_91c55e04e2050bba1afe50a0be2188ef | p@chr16:89595986..89595990, + |
| 1.62e-17 | FFCP PHASE1:Hg19::chr16:89595986..89595990,+#_91c55e04e2050bba1afe50a0be2188ef | p@chr16:89595986..89595990, + |
| 2.99e-16 | FFCP PHASE1:Hg19::chr17:40672344..40672359,+#_ef9378544bd8fe4752376e14065eca74 | p4@ATP6V0A1 |
| 2.99e-16 | FFCP PHASE2:Hg19::chr17:40672344..40672359,+#_ef9378544bd8fe4752376e14065eca74 | p4@ATP6V0A1 |
| 4.79e-16 | FFCP PHASE2:Hg19::chr12:127768750..127768765,+#_76e85e406232080e5b747655cb9ad235 | p@chr12:127768750..127768765, + |
| 4.79e-16 | FFCP PHASE1:Hg19::chr12:127768750..127768765,+#_76e85e406232080e5b747655cb9ad235 | p@chr12:127768750..127768765, + |
| 1.15e-15 | FFCP PHASE1:Hg19::chr1:155932380..155932384,-#_a6fa455f3f92401fed2cf7d77185e4c8 | p45@ARHGEF2 |
| 1.15e-15 | FFCP PHASE2:Hg19::chr1:155932380..155932384,-#_a6fa455f3f92401fed2cf7d77185e4c8 | p45@ARHGEF2 |
| 1.33e-15 | FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_1ed15c10674ca0c1abcccd4eced62ea7 | p@chr15:80841630..80841633, - |
| 1.33e-15 | FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_1ed15c10674ca0c1abcccd4eced62ea7 | p@chr15:80841630..80841633, - |
| 1.54e-15 | FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_f093c1071378abb60e7693dc04f84fa2 | p@chr9:118431048..118431059, + |
| 1.54e-15 | FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_f093c1071378abb60e7693dc04f84fa2 | p@chr21:26713474..26713508, - |
| 1.54e-15 | FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_f093c1071378abb60e7693dc04f84fa2 | p@chr9:118431048..118431059, + |
| 1.54e-15 | FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_f093c1071378abb60e7693dc04f84fa2 | p@chr21:26713474..26713508, - |
| 1.78e-15 | FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_22d00fa7782d5b969db9ddbbed02b03c | p@chr12:65959975..65959997, + |
| 1.78e-15 | FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_22d00fa7782d5b969db9ddbbed02b03c | p@chr12:65959975..65959997, + |
| 2.05e-15 | FFCP PHASE2:Hg19::chr18:52495549..52495589,-#_8bd6190603a03bdb3cce820c578890f0 | p@chr18:52495549..52495589, - |
| 2.05e-15 | FFCP PHASE1:Hg19::chr18:52495549..52495589,-#_8bd6190603a03bdb3cce820c578890f0 | p@chr18:52495549..52495589, - |
| 3.37e-15 | FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_b4d2aa2f5260a69ce6dc1895755b1056 | p1@ENST00000517635 |
| 3.37e-15 | FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_b4d2aa2f5260a69ce6dc1895755b1056 | p1@ENST00000517635 |
| 3.46e-15 | FFCP PHASE2:Hg19::chr12:63097437..63097440,-#_b00d83f2770e48306440e6a46051eca0 | p@chr12:63097437..63097440, - |
| 3.46e-15 | FFCP PHASE1:Hg19::chr12:63097437..63097440,-#_b00d83f2770e48306440e6a46051eca0 | p@chr12:63097437..63097440, - |
| 3.99e-15 | FFCP PHASE2:Hg19::chr12:69633237..69633264,-#_135eeb49cbdef214bf367023a9b285ad | p@chr12:69633237..69633264, - |
| 3.99e-15 | FFCP PHASE1:Hg19::chr12:69633237..69633264,-#_135eeb49cbdef214bf367023a9b285ad | p@chr12:69633237..69633264, - |
| 5.52e-15 | FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_b363336e32a483294fffc70a80f4fc67 | p@chr3:106484411..106484418, + |
| 5.52e-15 | FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_b363336e32a483294fffc70a80f4fc67 | p@chr3:106484411..106484418, + |
| 9.65e-15 | FFCP PHASE1:Hg19::chr2:33437467..33437488,+#_1a082ee50e95813aaacfe25ec710cb53 | p@chr2:33437467..33437488, + |
| 9.65e-15 | FFCP PHASE2:Hg19::chr2:33437467..33437488,+#_1a082ee50e95813aaacfe25ec710cb53 | p@chr2:33437467..33437488, + |
| 2.21e-14 | FFCP PHASE1:Hg19::chr20:48140671..48140693,-#_5dc2e48e2f4c7dc0d23ed91a5db9e07d | p@chr20:48140671..48140693, - |
| 2.21e-14 | FFCP PHASE2:Hg19::chr20:48140671..48140693,-#_5dc2e48e2f4c7dc0d23ed91a5db9e07d | p@chr20:48140671..48140693, - |
| 5.44e-14 | FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_00c3051944ff430ee4f7fa60b6cb74d9 | p8@MICAL2 |
| 5.44e-14 | FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_00c3051944ff430ee4f7fa60b6cb74d9 | p8@MICAL2 |
| 7.07e-14 | FFCP PHASE2:Hg19::chr4:74736899..74736917,+#_70f624f2e502b87d6e097ae197e5ba13 | p@chr4:74736899..74736917, + |
| 7.07e-14 | FFCP PHASE1:Hg19::chr4:74736899..74736917,+#_70f624f2e502b87d6e097ae197e5ba13 | p@chr4:74736899..74736917, + |
| 8.06e-14 | FFCP PHASE2:Hg19::chr1:32257811..32257816,-#_db8e883d9f3cfb321d6b5be03944526e | p1@BC098449 |
| 8.06e-14 | FFCP PHASE1:Hg19::chr1:32257811..32257816,-#_db8e883d9f3cfb321d6b5be03944526e | p1@BC098449 |
| 8.28e-14 | FFCP PHASE1:Hg19::chr11:5385751..5385762,+#_fabc773f432f931b66cafd475616c5e9 | p@chr11:5385751..5385762, + |
| 8.28e-14 | FFCP PHASE1:Hg19::chr13:52027062..52027077,-#_fabc773f432f931b66cafd475616c5e9 | p13@INTS6 |
| 8.28e-14 | FFCP PHASE2:Hg19::chr11:5385751..5385762,+#_fabc773f432f931b66cafd475616c5e9 | p@chr11:5385751..5385762, + |
| 8.28e-14 | FFCP PHASE2:Hg19::chr13:52027062..52027077,-#_fabc773f432f931b66cafd475616c5e9 | p13@INTS6 |
| 1.07e-13 | FFCP PHASE2:Hg19::chr4:66960590..66960627,-#_ecac2c78bd51891ef9f4caf9395115c7 | p@chr4:66960590..66960627, - |
| 1.07e-13 | FFCP PHASE1:Hg19::chr11:1006616..1006623,+#_ecac2c78bd51891ef9f4caf9395115c7 | p6@AP2A2 |
| 1.07e-13 | FFCP PHASE1:Hg19::chr16:59666186..59666189,-#_ecac2c78bd51891ef9f4caf9395115c7 | p@chr16:59666186..59666189, - |
| 1.07e-13 | FFCP PHASE1:Hg19::chr12:66009286..66009299,+#_ecac2c78bd51891ef9f4caf9395115c7 | p@chr12:66009286..66009299, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
