FF:10237-104A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005460 | |DRA_sample_Accession=CAGE@SAMD00005460 | ||
|accession_numbers=CAGE;DRX009134;DRR010008;DRZ001433;DRZ002816 | |accession_numbers=CAGE;DRX009134;DRR010008;DRZ001433;DRZ002816;DRZ012783;DRZ014166 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002021,UBERON:0000411,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002021,UBERON:0000411,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|donor= donor3 | |||
|expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.25!202.23!Olig1;;chr6:55631042..55631102,-!p1@Neurod6!1.95!88.80!Neurod6;;chr10:67375368..67375433,-!p1@Zfp365!1.92!141.51!Zfp365;;chr6:85463580..85463585,-!p1@Egr4!1.92!83.07!Egr4;;chr11:98190918..98190951,-!p1@Neurod2!1.89!76.77!Neurod2;;chr19:4989964..4989972,-!p1@Npas4!1.86!71.61!Npas4;;chr19:19185671..19185693,-!p1@Rorb!1.84!155.83!Rorb;;chr5:138199361..138199441,+!p2@Tsc22d4!1.78!109.42!Tsc22d4;;chr12:30219426..30219506,+!p2@Myt1l!1.74!54.43!Myt1l;;chr7:116154364..116154444,+!p1@Tub!1.73!88.23!Tub;;chr13:83663902..83663927,+!p1@Mef2c!1.72!1152.67!Mef2c;;chr3:95032091..95032183,-!p1@Mllt11!1.72!413.63!Mllt11;;chr13:83663546..83663560,+!p4@Mef2c!1.71!64.74!Mef2c;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.70!61.87!Pou3f3;;chr2:61642631..61642684,+!p1@Tbr1!1.64!42.97!Tbr1;;chr13:83663500..83663519,+!p8@Mef2c!1.62!40.68!Mef2c;;chr13:83663868..83663894,+!p2@Mef2c!1.60!532.22!Mef2c;;chr17:48015839..48015915,-!p3@Foxp4!1.59!44.69!Foxp4;;chrX:90531838..90531861,+!p1@Arx!1.58!45.83!Arx;;chr16:91225808..91225824,+!p1@Olig2!1.56!35.52!Olig2;;chr1:179374784..179374800,+!p2@Zfp238!1.54!38.96!Zfp238;;chr1:57029281..57029326,-!p1@Satb2!1.53!50.99!Satb2;;chr2:65683890..65683907,+!p1@Csrnp3!1.52!60.73!Csrnp3;;chr2:38206580..38206600,+!p2@Lhx2!1.50!37.24!Lhx2;;chr5:122452349..122452377,-!p4@Cux2!1.50!30.94!Cux2;;chr10:67375342..67375365,-!p3@Zfp365!1.50!30.36!Zfp365;;chr2:127347067..127347093,-!p1@Kcnip3!1.47!46.98!Kcnip3;;chr5:98609885..98609900,+!p1@Prdm8!1.46!28.07!Prdm8;;chr2:38206744..38206766,+!p1@Lhx2!1.45!32.66!Lhx2;;chr12:30213247..30213333,+!p1@Myt1l!1.45!27.50!Myt1l;;chr16:91270091..91270143,+!p2@Olig1!1.44!26.35!Olig1;;chr10:13685585..13685645,+!p2@Hivep2!1.43!87.08!Hivep2;;chr15:76352677..76352737,-!p3@Scrt1!1.42!25.21!Scrt1;;chrX:34442872..34442899,-!p1@Nkrf!1.40!30.94!Nkrf;;chr2:61642743..61642758,+!p2@Tbr1!1.40!24.06!Tbr1;;chr2:65768174..65768247,+!p2@Csrnp3!1.35!21.20!Csrnp3;;chr17:25707623..25707639,-!p1@Sox8!1.32!83.07!Sox8;;chr15:76352832..76352900,-!p1@Scrt1!1.32!20.05!Scrt1;;chr4:48058129..48058179,+!p2@Nr4a3!1.31!36.67!Nr4a3;;chr10:67375146..67375208,-!p2@Zfp365!1.31!29.79!Zfp365;;chr13:83643031..83643049,+!p11@Mef2c!1.31!19.48!Mef2c;;chr12:30220074..30220102,+!p3@Myt1l!1.30!18.91!Myt1l;;chr1:57028606..57028625,-!p4@Satb2!1.29!18.33!Satb2;;chr8:24780125..24780143,+!p1@Zmat4!1.28!25.78!Zmat4;;chr8:87297280..87297326,-!p2@Nfix!1.25!38.96!Nfix;;chr5:122499831..122499891,-!p1@Cux2!1.25!25.78!Cux2;;chr11:98190955..98190968,-!p2@Neurod2!1.25!16.61!Neurod2;;chr18:36441119..36441158,+!p2@Pura!1.23!38.38!Pura;;chr18:35020854..35020869,+!p1@Egr1!1.22!580.34!Egr1;;chr4:150482563..150482655,-!p2@Camta1!1.22!55.00!Camta1;;chr4:48058016..48058032,+!p3@Nr4a3!1.22!26.35!Nr4a3;;chr19:19185697..19185711,-!p2@Rorb!1.22!20.05!Rorb;;chr2:79296783..79296801,-!p1@Neurod1!1.22!15.47!Neurod1;;chr12:72149359..72149406,+!p4@Arid4a!1.20!19.48!Arid4a;;chr15:76353005..76353021,-!p2@Scrt1!1.20!14.90!Scrt1;;chr4:22415443..22415506,-!p1@Pou3f2!1.20!14.90!Pou3f2;;chr5:125342568..125342602,+!p2@Zfp664!1.18!22.92!Zfp664;;chr4:58956447..58956510,+!p1@Zkscan16!1.17!29.79!Zkscan16;;chr4:124334894..124334899,+!p1@Pou3f1!1.17!17.76!Pou3f1;;chr14:13178147..13178185,-!p1@Fezf2!1.17!13.75!Fezf2;;chr2:127347094..127347111,-!p2@Kcnip3!1.15!21.77!Kcnip3;;chr1:179374820..179374831,+!p3@Zfp238!1.15!13.18!Zfp238;;chr12:86939997..86940040,+!p4@Jdp2!1.15!13.18!Jdp2;;chr4:154335024..154335039,+!p1@Hes5!1.14!15.47!Hes5;;chr11:23980664..23980706,+!p2@Bcl11a!1.12!53.28!Bcl11a;;chr8:87297878..87297935,-!p3@Nfix!1.12!26.93!Nfix;;chr18:69680960..69681007,+!p10@Tcf4!1.12!16.04!Tcf4;;chr2:61642558..61642595,+!p3@Tbr1!1.11!12.03!Tbr1;;chr15:101097270..101097290,+!p1@Nr4a1!1.09!116.30!Nr4a1;;chr11:23978111..23978134,+!p3@Bcl11a!1.09!23.49!Bcl11a;;chr11:90250944..90250982,-!p2@Hlf!1.09!18.91!Hlf;;chr13:83663600..83663625,+!p6@Mef2c!1.09!17.19!Mef2c;;chr10:13685657..13685677,+!p7@Hivep2!1.09!14.90!Hivep2;;chr11:23978229..23978268,+!p8@Bcl11a!1.08!12.60!Bcl11a;;chr11:98636531..98636559,-!p1@Nr1d1!1.07!61.87!Nr1d1;;chr2:162769220..162769252,+!p1@L3mbtl1!1.07!10.89!L3mbtl1;;chr2:127347042..127347058,-!p3@Kcnip3!1.07!10.89!Kcnip3;;chr3:95032197..95032208,-!p3@Mllt11!1.06!13.18!Mllt11;;chr13:78339134..78339185,-!p5@Nr2f1!1.05!12.60!Nr2f1;;chr6:144152648..144152680,-!p5@Sox5!1.05!10.31!Sox5;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!1.04!105.41!Camta2;;chr2:77654815..77654872,-!p2@Zfp385b!1.04!12.60!Zfp385b;;chr4:135840573..135840601,+!p1@Zfp46!1.03!78.49!Zfp46;;chr3:95032184..95032195,-!p4@Mllt11!1.03!12.03!Mllt11;;chrX:108009761..108009788,+!p1@Pou3f4!1.03!9.74!Pou3f4;;chr12:54349410..54349461,+!p1@Npas3!1.02!11.46!Npas3;;chr17:51971932..51971958,-!p2@Satb1!1.01!12.60!Satb1;;chr7:122968213..122968266,-!p4@Sox6!1.01!10.89!Sox6;;chr9:96631820..96631834,-!p11@Zbtb38!1.01!9.17!Zbtb38;;chr14:34791937..34791977,-!p1@Zfp488!1.01!9.17!Zfp488;;chr14:13178361..13178386,-!p2@Fezf2!1.01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tv4;;chr7:71083428..71083518,-!p3@Klf13!0.52!22.34!Klf13;;chr10:62328186..62328219,-!p1@Tet1!0.52!17.76!Tet1;;chr17:51951634..51951651,-!p6@Satb1!0.52!5.16!Satb1;;chr6:47785785..47785796,+!p4@Zfp398!0.52!4.01!Zfp398;;chr2:115890294..115890334,-!p9@Meis2!0.52!3.44!Meis2;;chr2:147019977..147019985,-!p2@Nkx2-2!0.52!2.29!Nkx2-2;;chr2:181501988..181502026,+!p3@Myt1!0.52!2.29!Myt1;;chr6:144157991..144158007,-!p9@Sox5!0.52!2.29!Sox5;;chr6:28347999..28348023,-!p3@Zfp800!0.52!2.29!Zfp800;;chr6:144152590..144152602,-!p22@Sox5!0.52!2.29!Sox5;;chr7:123182318..123182332,-!p11@Sox6!0.52!2.29!Sox6;;chr19:28085572..28085579,-!p9@Rfx3!0.52!2.29!Rfx3;;chr11:96685487..96685512,-!p7@Nfe2l1!0.52!2.29!Nfe2l1;;chr7:38557887..38557910,-!p5@Zfp536!0.52!2.29!Zfp536;;chr8:12395629..12395644,+!p6@Sox1!0.52!2.29!Sox1;;chr7:30088957..30088966,+!p6@Dpf1!0.52!2.29!Dpf1;;chr12:86815639..86815664,+!p2@Fos!0.52!2.29!Fos;;chr14:13178241..13178254,-!p4@Fezf2!0.52!2.29!Fezf2;;chr14:122874619..122874634,+!p1@Zic2!0.52!2.29!Zic2;;chrX:55284180..55284195,+!p2@Zic3!0.52!2.29!Zic3;;chr3:17954392..17954407,+!p2@Bhlhe22!0.52!2.29!Bhlhe22;;chr2:77654767..77654784,-!p12@Zfp385b!0.52!2.29!Zfp385b;;chr2:77541309..77541322,-!p14@Zfp385b!0.52!2.29!Zfp385b;;chr2:77541432..77541474,-!p5@Zfp385b!0.52!2.29!Zfp385b;;chr4:48058252..48058261,+!p6@Nr4a3!0.52!2.29!Nr4a3;;chr2:48805082..48805137,+!p1@Mbd5!0.51!61.30!Mbd5;;chr7:17199897..17199955,-!p1@Grlf1!0.51!32.66!Grlf1;;chr7:17200422..17200487,-!p3@Grlf1!0.51!18.33!Grlf1;;chr11:97524415..97524455,+!p2@Mllt6!0.51!10.89!Mllt6;;chr6:92041399..92041417,+!p2@Nr2c2!0.51!9.17!Nr2c2;;chr7:91558392..91558434,-!p1@Arnt2!0.51!7.45!Arnt2;;chr2:168032375..168032388,-!p4@Adnp!0.51!6.87!Adnp;;chr7:25292310..25292329,+!p5@Zfp428!0.51!3.44!Zfp428;;chr7:19895384..19895399,-!p2@Fosb!0.51!3.44!Fosb;;chr2:77654936..77654988,-!p4@Zfp385b!0.51!2.86!Zfp385b;;chr4:6917793..6917809,-!p5@Tox!0.51!2.86!Tox;;chr14:118636214..118636235,-!p1@Sox21!0.51!2.86!Sox21;;chr15:81575487..81575561,+!p1@Zc3h7b!0.50!61.87!Zc3h7b;;chr2:25562346..25562433,+!p1@Bmyc!0.50!52.71!Bmyc;;chr7:148513456..148513506,-!p1@Deaf1!0.50!44.11!Deaf1;;chr16:22439654..22439676,-!p2@Etv5!0.50!16.61!Etv5;;chr8:112603610..112603656,+!p1@Zfp612!0.50!12.60!Zfp612;;chr5:110539286..110539317,+!p2@Zfp605!0.50!6.30!Zfp605;;chr1:38684431..38684450,-!p3@Aff3!0.50!4.01!Aff3;;chr13:96094769..96094829,+!p4@Zbed3!0.50!3.44!Zbed3;;chr7:52960555..52960662,+!p1@Dbp!0.49!23.49!Dbp;;chr15:38230415..38230426,-!p2@Klf10!0.49!9.17!Klf10;;chr9:55785981..55786009,-!p2@Scaper!0.49!6.87!Scaper;;chr12:25257141..25257173,+!p1@Grhl1!0.49!5.16!Grhl1;;chr15:81633139..81633152,+!p4@Tef!0.49!4.01!Tef;;chr1:170361695..170361722,-!p12@Pbx1!0.49!2.86!Pbx1;;chr17:51952537..51952552,-!p15@Satb1!0.49!2.29!Satb1;;chr16:22439681..22439698,-!p1@Etv5!0.48!48.12!Etv5;;chr1:182499095..182499141,+!p2@Parp1!0.48!47.55!Parp1;;chr1:64167851..64167886,-!p3@Klf7!0.48!10.89!Klf7;;chr18:79306158..79306249,-!p1@Setbp1!0.48!8.59!Setbp1;;chrX:92906980..92907024,+!p2@Zc3h12b!0.48!6.30!Zc3h12b;;chr7:130644017..130644092,-!p1@Zkscan2!0.48!4.58!Zkscan2;;chr8:87324171..87324182,-!p6@Nfix!0.48!4.01!Nfix;;chr9:68501549..68501564,+!p6@Rora!0.48!2.86!Rora;;chr17:48015645..48015689,-!p9@Foxp4!0.48!2.86!Foxp4;;chr7:48888915..48888973,+!p1@Zfp788!0.47!33.80!Zfp788;;chr16:23988711..23988727,-!p1@Bcl6!0.47!31.51!Bcl6;;chr9:121669118..121669179,+!p1@Zfp651!0.47!28.07!Zfp651;;chr19:26679654..26679675,+!p1@Smarca2!0.47!24.63!Smarca2;;chr7:6238191..6238224,+!p1@Zfp667!0.47!15.47!Zfp667;;chr11:62602904..62602945,-!p1@Zfp286!0.47!12.03!Zfp286;;chr11:106993487..106993515,-!p2@Bptf!0.47!7.45!Bptf;;chr7:135019147..135019187,-!p3@Zfp668!0.47!5.16!Zfp668;;chr12:3807076..3807086,+!p8@Dnmt3a!0.47!4.01!Dnmt3a;;chrX:103070839..103070856,-!p4@Atrx!0.47!3.44!Atrx;;chr4:13670626..13670657,+!p5@Runx1t1!0.47!3.44!Runx1t1;;chr7:17200198..17200209,-!p8@Grlf1!0.47!2.86!Grlf1;;chr14:76814539..76814600,+!p2@Tsc22d1!0.46!36.67!Tsc22d1;;chr1:170362040..170362113,-!p2@Pbx1!0.46!20.05!Pbx1;;chr2:25562315..25562344,+!p3@Bmyc!0.46!8.02!Bmyc;;chr6:14851287..14851342,+!p1@Foxp2!0.46!8.02!Foxp2;;chr6:145814003..145814056,-!p1@Bhlhe41!0.46!6.87!Bhlhe41;;chr6:14851440..14851497,+!p2@Foxp2!0.46!5.73!Foxp2;;chr4:126700722..126700753,+!p4@Sfpq!0.46!5.73!Sfpq;;chr1:170361991..170362015,-!p6@Pbx1!0.46!5.16!Pbx1;;chr14:76814883..76814898,+!p9@Tsc22d1!0.46!4.58!Tsc22d1;;chr14:75684203..75684214,+!p4@Zc3h13!0.46!4.01!Zc3h13;;chr3:8667033..8667046,-!p3@Hey1!0.46!2.86!Hey1;;chr4:48057987..48057996,+!p7@Nr4a3!0.46!2.29!Nr4a3;;chr15:76701830..76701883,-!p1@Zfp251!0.45!33.80!Zfp251;;chr7:50835064..50835134,+!p1@Zfp719!0.45!19.48!Zfp719;;chr2:83484634..83484647,+!p4@Zc3h15!0.45!17.19!Zc3h15;;chr11:50729638..50729681,-!p1@Zfp2!0.45!12.60!Zfp2;;chr11:62545367..62545412,-!p1@Zfp287!0.45!9.74!Zfp287;;chr4:54960870..54960926,+!p1@Zfp462!0.45!8.59!Zfp462;;chr4:122673278..122673336,+!p1@Mycl1!0.45!7.45!Mycl1;;chr1:64167550..64167618,-!p4@Klf7!0.45!6.30!Klf7;;chr13:65380103..65380116,+!p3@Zfp369!0.4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| |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.25!202.23!Olig1;;chr6:55631042..55631102,-!p1@Neurod6!1.95!88.80!Neurod6;;chr10:67375368..67375433,-!p1@Zfp365!1.92!141.51!Zfp365;;chr6:85463580..85463585,-!p1@Egr4!1.92!83.07!Egr4;;chr11:98190918..98190951,-!p1@Neurod2!1.89!76.77!Neurod2;;chr19:4989964..4989972,-!p1@Npas4!1.86!71.61!Npas4;;chr19:19185671..19185693,-!p1@Rorb!1.84!155.83!Rorb;;chr5:138199361..138199441,+!p2@Tsc22d4!1.78!109.42!Tsc22d4;;chr12:30219426..30219506,+!p2@Myt1l!1.74!54.43!Myt1l;;chr7:116154364..116154444,+!p1@Tub!1.73!88.23!Tub;;chr13:83663902..83663927,+!p1@Mef2c!1.72!1152.67!Mef2c;;chr3:95032091..95032183,-!p1@Mllt11!1.72!413.63!Mllt11;;chr13:83663546..83663560,+!p4@Mef2c!1.71!64.74!Mef2c;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.70!61.87!Pou3f3;;chr2:61642631..61642684,+!p1@Tbr1!1.64!42.97!Tbr1;;chr13:83663500..83663519,+!p8@Mef2c!1.62!40.68!Mef2c;;chr13:83663868..83663894,+!p2@Mef2c!1.60!532.22!Mef2c;;chr17:48015839..48015915,-!p3@Foxp4!1.59!44.69!Foxp4;;chrX:90531838..90531861,+!p1@Arx!1.58!45.83!Arx;;chr16:91225808..91225824,+!p1@Olig2!1.56!35.52!Olig2;;chr1:179374784..179374800,+!p2@Zfp238!1.54!38.96!Zfp238;;chr1:57029281..57029326,-!p1@Satb2!1.53!50.99!Satb2;;chr2:65683890..65683907,+!p1@Csrnp3!1.52!60.73!Csrnp3;;chr2:38206580..38206600,+!p2@Lhx2!1.50!37.24!Lhx2;;chr5:122452349..122452377,-!p4@Cux2!1.50!30.94!Cux2;;chr10:67375342..67375365,-!p3@Zfp365!1.50!30.36!Zfp365;;chr2:127347067..127347093,-!p1@Kcnip3!1.47!46.98!Kcnip3;;chr5:98609885..98609900,+!p1@Prdm8!1.46!28.07!Prdm8;;chr2:38206744..38206766,+!p1@Lhx2!1.45!32.66!Lhx2;;chr12:30213247..30213333,+!p1@Myt1l!1.45!27.50!Myt1l;;chr16:91270091..91270143,+!p2@Olig1!1.44!26.35!Olig1;;chr10:13685585..13685645,+!p2@Hivep2!1.43!87.08!Hivep2;;chr15:76352677..76352737,-!p3@Scrt1!1.42!25.21!Scrt1;;chrX:34442872..34442899,-!p1@Nkrf!1.40!30.94!Nkrf;;chr2:61642743..61642758,+!p2@Tbr1!1.40!24.06!Tbr1;;chr2:65768174..65768247,+!p2@Csrnp3!1.35!21.20!Csrnp3;;chr17:25707623..25707639,-!p1@Sox8!1.32!83.07!Sox8;;chr15:76352832..76352900,-!p1@Scrt1!1.32!20.05!Scrt1;;chr4:48058129..48058179,+!p2@Nr4a3!1.31!36.67!Nr4a3;;chr10:67375146..67375208,-!p2@Zfp365!1.31!29.79!Zfp365;;chr13:83643031..83643049,+!p11@Mef2c!1.31!19.48!Mef2c;;chr12:30220074..30220102,+!p3@Myt1l!1.30!18.91!Myt1l;;chr1:57028606..57028625,-!p4@Satb2!1.29!18.33!Satb2;;chr8:24780125..24780143,+!p1@Zmat4!1.28!25.78!Zmat4;;chr8:87297280..87297326,-!p2@Nfix!1.25!38.96!Nfix;;chr5:122499831..122499891,-!p1@Cux2!1.25!25.78!Cux2;;chr11:98190955..98190968,-!p2@Neurod2!1.25!16.61!Neurod2;;chr18:36441119..36441158,+!p2@Pura!1.23!38.38!Pura;;chr18:35020854..35020869,+!p1@Egr1!1.22!580.34!Egr1;;chr4:150482563..150482655,-!p2@Camta1!1.22!55.00!Camta1;;chr4:48058016..48058032,+!p3@Nr4a3!1.22!26.35!Nr4a3;;chr19:19185697..19185711,-!p2@Rorb!1.22!20.05!Rorb;;chr2:79296783..79296801,-!p1@Neurod1!1.22!15.47!Neurod1;;chr12:72149359..72149406,+!p4@Arid4a!1.20!19.48!Arid4a;;chr15:76353005..76353021,-!p2@Scrt1!1.20!14.90!Scrt1;;chr4:22415443..22415506,-!p1@Pou3f2!1.20!14.90!Pou3f2;;chr5:125342568..125342602,+!p2@Zfp664!1.18!22.92!Zfp664;;chr4:58956447..58956510,+!p1@Zkscan16!1.17!29.79!Zkscan16;;chr4:124334894..124334899,+!p1@Pou3f1!1.17!17.76!Pou3f1;;chr14:13178147..13178185,-!p1@Fezf2!1.17!13.75!Fezf2;;chr2:127347094..127347111,-!p2@Kcnip3!1.15!21.77!Kcnip3;;chr1:179374820..179374831,+!p3@Zfp238!1.15!13.18!Zfp238;;chr12:86939997..86940040,+!p4@Jdp2!1.15!13.18!Jdp2;;chr4:154335024..154335039,+!p1@Hes5!1.14!15.47!Hes5;;chr11:23980664..23980706,+!p2@Bcl11a!1.12!53.28!Bcl11a;;chr8:87297878..87297935,-!p3@Nfix!1.12!26.93!Nfix;;chr18:69680960..69681007,+!p10@Tcf4!1.12!16.04!Tcf4;;chr2:61642558..61642595,+!p3@Tbr1!1.11!12.03!Tbr1;;chr15:101097270..101097290,+!p1@Nr4a1!1.09!116.30!Nr4a1;;chr11:23978111..23978134,+!p3@Bcl11a!1.09!23.49!Bcl11a;;chr11:90250944..90250982,-!p2@Hlf!1.09!18.91!Hlf;;chr13:83663600..83663625,+!p6@Mef2c!1.09!17.19!Mef2c;;chr10:13685657..13685677,+!p7@Hivep2!1.09!14.90!Hivep2;;chr11:23978229..23978268,+!p8@Bcl11a!1.08!12.60!Bcl11a;;chr11:98636531..98636559,-!p1@Nr1d1!1.07!61.87!Nr1d1;;chr2:162769220..162769252,+!p1@L3mbtl1!1.07!10.89!L3mbtl1;;chr2:127347042..127347058,-!p3@Kcnip3!1.07!10.89!Kcnip3;;chr3:95032197..95032208,-!p3@Mllt11!1.06!13.18!Mllt11;;chr13:78339134..78339185,-!p5@Nr2f1!1.05!12.60!Nr2f1;;chr6:144152648..144152680,-!p5@Sox5!1.05!10.31!Sox5;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!1.04!105.41!Camta2;;chr2:77654815..77654872,-!p2@Zfp385b!1.04!12.60!Zfp385b;;chr4:135840573..135840601,+!p1@Zfp46!1.03!78.49!Zfp46;;chr3:95032184..95032195,-!p4@Mllt11!1.03!12.03!Mllt11;;chrX:108009761..108009788,+!p1@Pou3f4!1.03!9.74!Pou3f4;;chr12:54349410..54349461,+!p1@Npas3!1.02!11.46!Npas3;;chr17:51971932..51971958,-!p2@Satb1!1.01!12.60!Satb1;;chr7:122968213..122968266,-!p4@Sox6!1.01!10.89!Sox6;;chr9:96631820..96631834,-!p11@Zbtb38!1.01!9.17!Zbtb38;;chr14:34791937..34791977,-!p1@Zfp488!1.01!9.17!Zfp488;;chr14:13178361..13178386,-!p2@Fezf2!1.01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tv4;;chr7:71083428..71083518,-!p3@Klf13!0.52!22.34!Klf13;;chr10:62328186..62328219,-!p1@Tet1!0.52!17.76!Tet1;;chr17:51951634..51951651,-!p6@Satb1!0.52!5.16!Satb1;;chr6:47785785..47785796,+!p4@Zfp398!0.52!4.01!Zfp398;;chr2:115890294..115890334,-!p9@Meis2!0.52!3.44!Meis2;;chr2:147019977..147019985,-!p2@Nkx2-2!0.52!2.29!Nkx2-2;;chr2:181501988..181502026,+!p3@Myt1!0.52!2.29!Myt1;;chr6:144157991..144158007,-!p9@Sox5!0.52!2.29!Sox5;;chr6:28347999..28348023,-!p3@Zfp800!0.52!2.29!Zfp800;;chr6:144152590..144152602,-!p22@Sox5!0.52!2.29!Sox5;;chr7:123182318..123182332,-!p11@Sox6!0.52!2.29!Sox6;;chr19:28085572..28085579,-!p9@Rfx3!0.52!2.29!Rfx3;;chr11:96685487..96685512,-!p7@Nfe2l1!0.52!2.29!Nfe2l1;;chr7:38557887..38557910,-!p5@Zfp536!0.52!2.29!Zfp536;;chr8:12395629..12395644,+!p6@Sox1!0.52!2.29!Sox1;;chr7:30088957..30088966,+!p6@Dpf1!0.52!2.29!Dpf1;;chr12:86815639..86815664,+!p2@Fos!0.52!2.29!Fos;;chr14:13178241..13178254,-!p4@Fezf2!0.52!2.29!Fezf2;;chr14:122874619..122874634,+!p1@Zic2!0.52!2.29!Zic2;;chrX:55284180..55284195,+!p2@Zic3!0.52!2.29!Zic3;;chr3:17954392..17954407,+!p2@Bhlhe22!0.52!2.29!Bhlhe22;;chr2:77654767..77654784,-!p12@Zfp385b!0.52!2.29!Zfp385b;;chr2:77541309..77541322,-!p14@Zfp385b!0.52!2.29!Zfp385b;;chr2:77541432..77541474,-!p5@Zfp385b!0.52!2.29!Zfp385b;;chr4:48058252..48058261,+!p6@Nr4a3!0.52!2.29!Nr4a3;;chr2:48805082..48805137,+!p1@Mbd5!0.51!61.30!Mbd5;;chr7:17199897..17199955,-!p1@Grlf1!0.51!32.66!Grlf1;;chr7:17200422..17200487,-!p3@Grlf1!0.51!18.33!Grlf1;;chr11:97524415..97524455,+!p2@Mllt6!0.51!10.89!Mllt6;;chr6:92041399..92041417,+!p2@Nr2c2!0.51!9.17!Nr2c2;;chr7:91558392..91558434,-!p1@Arnt2!0.51!7.45!Arnt2;;chr2:168032375..168032388,-!p4@Adnp!0.51!6.87!Adnp;;chr7:25292310..25292329,+!p5@Zfp428!0.51!3.44!Zfp428;;chr7:19895384..19895399,-!p2@Fosb!0.51!3.44!Fosb;;chr2:77654936..77654988,-!p4@Zfp385b!0.51!2.86!Zfp385b;;chr4:6917793..6917809,-!p5@Tox!0.51!2.86!Tox;;chr14:118636214..118636235,-!p1@Sox21!0.51!2.86!Sox21;;chr15:81575487..81575561,+!p1@Zc3h7b!0.50!61.87!Zc3h7b;;chr2:25562346..25562433,+!p1@Bmyc!0.50!52.71!Bmyc;;chr7:148513456..148513506,-!p1@Deaf1!0.50!44.11!Deaf1;;chr16:22439654..22439676,-!p2@Etv5!0.50!16.61!Etv5;;chr8:112603610..112603656,+!p1@Zfp612!0.50!12.60!Zfp612;;chr5:110539286..110539317,+!p2@Zfp605!0.50!6.30!Zfp605;;chr1:38684431..38684450,-!p3@Aff3!0.50!4.01!Aff3;;chr13:96094769..96094829,+!p4@Zbed3!0.50!3.44!Zbed3;;chr7:52960555..52960662,+!p1@Dbp!0.49!23.49!Dbp;;chr15:38230415..38230426,-!p2@Klf10!0.49!9.17!Klf10;;chr9:55785981..55786009,-!p2@Scaper!0.49!6.87!Scaper;;chr12:25257141..25257173,+!p1@Grhl1!0.49!5.16!Grhl1;;chr15:81633139..81633152,+!p4@Tef!0.49!4.01!Tef;;chr1:170361695..170361722,-!p12@Pbx1!0.49!2.86!Pbx1;;chr17:51952537..51952552,-!p15@Satb1!0.49!2.29!Satb1;;chr16:22439681..22439698,-!p1@Etv5!0.48!48.12!Etv5;;chr1:182499095..182499141,+!p2@Parp1!0.48!47.55!Parp1;;chr1:64167851..64167886,-!p3@Klf7!0.48!10.89!Klf7;;chr18:79306158..79306249,-!p1@Setbp1!0.48!8.59!Setbp1;;chrX:92906980..92907024,+!p2@Zc3h12b!0.48!6.30!Zc3h12b;;chr7:130644017..130644092,-!p1@Zkscan2!0.48!4.58!Zkscan2;;chr8:87324171..87324182,-!p6@Nfix!0.48!4.01!Nfix;;chr9:68501549..68501564,+!p6@Rora!0.48!2.86!Rora;;chr17:48015645..48015689,-!p9@Foxp4!0.48!2.86!Foxp4;;chr7:48888915..48888973,+!p1@Zfp788!0.47!33.80!Zfp788;;chr16:23988711..23988727,-!p1@Bcl6!0.47!31.51!Bcl6;;chr9:121669118..121669179,+!p1@Zfp651!0.47!28.07!Zfp651;;chr19:26679654..26679675,+!p1@Smarca2!0.47!24.63!Smarca2;;chr7:6238191..6238224,+!p1@Zfp667!0.47!15.47!Zfp667;;chr11:62602904..62602945,-!p1@Zfp286!0.47!12.03!Zfp286;;chr11:106993487..106993515,-!p2@Bptf!0.47!7.45!Bptf;;chr7:135019147..135019187,-!p3@Zfp668!0.47!5.16!Zfp668;;chr12:3807076..3807086,+!p8@Dnmt3a!0.47!4.01!Dnmt3a;;chrX:103070839..103070856,-!p4@Atrx!0.47!3.44!Atrx;;chr4:13670626..13670657,+!p5@Runx1t1!0.47!3.44!Runx1t1;;chr7:17200198..17200209,-!p8@Grlf1!0.47!2.86!Grlf1;;chr14:76814539..76814600,+!p2@Tsc22d1!0.46!36.67!Tsc22d1;;chr1:170362040..170362113,-!p2@Pbx1!0.46!20.05!Pbx1;;chr2:25562315..25562344,+!p3@Bmyc!0.46!8.02!Bmyc;;chr6:14851287..14851342,+!p1@Foxp2!0.46!8.02!Foxp2;;chr6:145814003..145814056,-!p1@Bhlhe41!0.46!6.87!Bhlhe41;;chr6:14851440..14851497,+!p2@Foxp2!0.46!5.73!Foxp2;;chr4:126700722..126700753,+!p4@Sfpq!0.46!5.73!Sfpq;;chr1:170361991..170362015,-!p6@Pbx1!0.46!5.16!Pbx1;;chr14:76814883..76814898,+!p9@Tsc22d1!0.46!4.58!Tsc22d1;;chr14:75684203..75684214,+!p4@Zc3h13!0.46!4.01!Zc3h13;;chr3:8667033..8667046,-!p3@Hey1!0.46!2.86!Hey1;;chr4:48057987..48057996,+!p7@Nr4a3!0.46!2.29!Nr4a3;;chr15:76701830..76701883,-!p1@Zfp251!0.45!33.80!Zfp251;;chr7:50835064..50835134,+!p1@Zfp719!0.45!19.48!Zfp719;;chr2:83484634..83484647,+!p4@Zc3h15!0.45!17.19!Zc3h15;;chr11:50729638..50729681,-!p1@Zfp2!0.45!12.60!Zfp2;;chr11:62545367..62545412,-!p1@Zfp287!0.45!9.74!Zfp287;;chr4:54960870..54960926,+!p1@Zfp462!0.45!8.59!Zfp462;;chr4:122673278..122673336,+!p1@Mycl1!0.45!7.45!Mycl1;;chr1:64167550..64167618,-!p4@Klf7!0.45!6.30!Klf7;;chr13:65380103..65380116,+!p3@Zfp369!0.4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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316,FF:0000294 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316,FF:0000294 | ||
Line 45: | Line 46: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13033 | |library_id=CNhs13033 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13033 | ||
|name=visual cortex - wildtype | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;10237 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;10237 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N15%252c%2520donor3.CNhs13033.10237-104A3.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N15%252c%2520donor3.CNhs13033.10237-104A3.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N15%252c%2520donor3.CNhs13033.10237-104A3.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N15%252c%2520donor3.CNhs13033.10237-104A3.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/visual%2520cortex%2520-%2520wildtype%252c%2520neonate%2520N15%252c%2520donor3.CNhs13033.10237-104A3.mm9.nobarcode.rdna.fa.gz | |||
|name=visual cortex - wildtype | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13033,LSID999,release012,COMPLETED | |profile_hcage=CNhs13033,LSID999,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.34557214567236,0,0,0,0,0,0.358980707152115,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.13969407397359,0,0,0,0,0,0,0,0,0,0,0,0,0.659226585696921,-0.558422792324031,0,0,0,0,0,-0.209322725495826,0.150156760405983,0.116743483271537,1.23886824897147,-0.269868638010351,0.331587424856164,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,-0.0726960239896975,0.382973280977661,0.746880393378071,0,-0.10409248387501,-0.310650657339386,0.993480945169588,0.061757227825316,0,0.0190120621523582,0.104037018085932,0,0.196699873644339,0,0.159108892805817,0.208794856026609,0.519056391146607,-0.0788315948399074,0,0,0,0,0,0,0.328928477474124,0.132877911289549,0.317287788385361,0,0,0.827947632634613,0.434359137099159,0 | |repeat_enrich_byfamily=0.34557214567236,0,0,0,0,0,0.358980707152115,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.13969407397359,0,0,0,0,0,0,0,0,0,0,0,0,0.659226585696921,-0.558422792324031,0,0,0,0,0,-0.209322725495826,0.150156760405983,0.116743483271537,1.23886824897147,-0.269868638010351,0.331587424856164,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,-0.0726960239896975,0.382973280977661,0.746880393378071,0,-0.10409248387501,-0.310650657339386,0.993480945169588,0.061757227825316,0,0.0190120621523582,0.104037018085932,0,0.196699873644339,0,0.159108892805817,0.208794856026609,0.519056391146607,-0.0788315948399074,0,0,0,0,0,0,0.328928477474124,0.132877911289549,0.317287788385361,0,0,0.827947632634613,0.434359137099159,0 | ||
Line 86: | Line 96: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=Visual cortex | |sample_tissue=Visual cortex | ||
|timecourse= | |time= neonate N15 | ||
|timecourse=Visual_cortex_development | |||
|top_motifs=POU1F1:3.45691573052;CUX2:3.2129384021;POU3F1..4:2.89684204278;AHR_ARNT_ARNT2:2.84040025334;EGR1..3:2.77382438138;AIRE:2.70338577182;REST:2.66331246453;ZFP161:2.59211808313;NHLH1,2:2.49947590414;HOXA9_MEIS1:2.45359075076;ZBTB6:2.45078826254;PRDM1:2.41893746158;OCT4_SOX2{dimer}:2.40847959416;MYFfamily:2.35262147517;ATF5_CREB3:2.27869191905;EVI1:2.25037406688;PAX4:2.22490331583;KLF4:2.20463910166;MED-1{core}:2.19381542899;ALX1:2.17031292655;UFEwm:2.16247347318;HMGA1,2:2.11217881949;BREu{core}:2.10411900453;PRRX1,2:2.07816364556;LMO2:2.05751970176;POU6F1:2.05066636928;ZBTB16:1.99561591686;PAX6:1.92160128999;JUN:1.91099428271;MTF1:1.86562825469;PBX1:1.83720424101;MAFB:1.82957867618;GZF1:1.79935743593;CREB1:1.79890001419;ATF2:1.79120759764;DBP:1.76594894675;FOXQ1:1.76359261385;PAX8:1.74438417501;MTE{core}:1.68378781102;HIC1:1.63337472732;RFX1:1.62496875724;ZIC1..3:1.61787815942;RREB1:1.61260378705;TEF:1.54422148123;PAX5:1.53656710624;TFAP2B:1.48708554149;CDC5L:1.47690255085;TGIF1:1.43759481024;GATA4:1.43680651506;TFDP1:1.43601087216;NKX6-1,2:1.3596743766;GFI1B:1.337650431;CDX1,2,4:1.33566992231;ARID5B:1.31946406813;HOX{A4,D4}:1.27288506796;MZF1:1.2326399346;NRF1:1.1865842908;IKZF1:1.18479006281;NKX2-3_NKX2-5:1.17450775476;SMAD1..7,9:1.17009511456;NANOG:1.14821022305;MYOD1:1.13885757148;NFIL3:1.13638478144;ZNF384:1.09546475655;GTF2I:1.07891378201;FOXN1:1.07515798592;GLI1..3:1.0694455719;HOX{A5,B5}:1.04059617924;NKX2-2,8:1.01982136431;HAND1,2:0.941639659374;ONECUT1,2:0.940571275109;RFX2..5_RFXANK_RFXAP:0.918992668653;VSX1,2:0.906657102504;NR3C1:0.898850598324;TAL1_TCF{3,4,12}:0.897063661332;NKX3-2:0.8953675429;POU5F1:0.819493946699;TFAP2{A,C}:0.813873757025;STAT1,3:0.795973922897;bHLH_family:0.790047282336;IRF7:0.678734126604;ZEB1:0.669232904923;NFE2L2:0.629393375467;RBPJ:0.623551501528;PATZ1:0.603864497664;RORA:0.595725742737;SPZ1:0.541511783985;FOX{F1,F2,J1}:0.540045648899;NKX3-1:0.517593475414;SOX2:0.480036300991;ATF4:0.439629401427;PPARG:0.415791490713;FOXM1:0.374661986729;SREBF1,2:0.370514521578;FOXP1:0.355633078768;SOX{8,9,10}:0.327159941059;LHX3,4:0.308099677617;MAZ:0.287434795848;BPTF:0.276949061832;HES1:0.235030269369;NFE2L1:0.216420049058;ZNF143:0.213035917923;HIF1A:0.198317937453;GTF2A1,2:0.187142085431;ADNP_IRX_SIX_ZHX:0.142147022289;NFE2:0.0894123506045;STAT2,4,6:0.0838188627372;ESRRA:0.0533850152701;FOXA2:0.0351013081515;EN1,2:0.0311970714198;PAX2:0.0250446361274;FOXP3:0.0109128984416;SNAI1..3:-0.107105466238;MEF2{A,B,C,D}:-0.112484532064;IKZF2:-0.149248493924;HMX1:-0.209956968935;ATF6:-0.228055351604;FOXD3:-0.251957149973;NKX2-1,4:-0.281592914414;CRX:-0.29661259668;TOPORS:-0.331244057679;FOXL1:-0.370266484398;SOX17:-0.416810902647;NANOG{mouse}:-0.476326382408;ZNF238:-0.495377142618;GCM1,2:-0.502090676889;NFATC1..3:-0.518320952869;MYB:-0.526524467557;YY1:-0.629601546908;MYBL2:-0.708726335571;TFAP4:-0.713731037313;ZNF148:-0.728768320983;EP300:-0.72889097454;AR:-0.766660538876;HBP1_HMGB_SSRP1_UBTF:-0.767357629377;TLX2:-0.782037597184;HSF1,2:-0.798951281512;LEF1_TCF7_TCF7L1,2:-0.803190511729;TLX1..3_NFIC{dimer}:-0.812527519917;HNF1A:-0.883414887448;FOS_FOS{B,L1}_JUN{B,D}:-0.902732816981;CEBPA,B_DDIT3:-0.92247520939;RUNX1..3:-0.961011892566;NFKB1_REL_RELA:-0.977102467724;POU2F1..3:-0.981320195001;EBF1:-0.998049815504;GATA6:-1.02586306895;FOSL2:-1.05205452574;ZNF423:-1.0927640623;HNF4A_NR2F1,2:-1.09464832708;SPI1:-1.09680707193;BACH2:-1.17517251232;ALX4:-1.2051262473;SP1:-1.21234912663;SOX5:-1.21395087378;ELK1,4_GABP{A,B1}:-1.22449474194;TFCP2:-1.24141941902;NFY{A,B,C}:-1.24154070358;T:-1.24766508424;XCPE1{core}:-1.27150129328;PITX1..3:-1.30657412507;PAX1,9:-1.31309154206;NR5A1,2:-1.31366074621;NR6A1:-1.31989744268;SPIB:-1.34071015179;GFI1:-1.35855331701;IRF1,2:-1.38959663504;TBX4,5:-1.40233823844;PDX1:-1.40608458007;FOX{I1,J2}:-1.43206133101;ETS1,2:-1.47313468931;HLF:-1.49609203804;TEAD1:-1.5003744474;TBP:-1.51130315416;FOXO1,3,4:-1.54944174034;E2F1..5:-1.60424324683;DMAP1_NCOR{1,2}_SMARC:-1.70855774668;STAT5{A,B}:-1.73177368183;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.76212166106;ELF1,2,4:-1.81009832996;NR1H4:-1.82719081026;RXR{A,B,G}:-1.94248657549;SRF:-1.96915254029;NFIX:-2.04758922055;TP53:-2.1254121333;RXRA_VDR{dimer}:-2.19540858667;ESR1:-2.20563847695;FOX{D1,D2}:-2.34986294385;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.50276064766 | |top_motifs=POU1F1:3.45691573052;CUX2:3.2129384021;POU3F1..4:2.89684204278;AHR_ARNT_ARNT2:2.84040025334;EGR1..3:2.77382438138;AIRE:2.70338577182;REST:2.66331246453;ZFP161:2.59211808313;NHLH1,2:2.49947590414;HOXA9_MEIS1:2.45359075076;ZBTB6:2.45078826254;PRDM1:2.41893746158;OCT4_SOX2{dimer}:2.40847959416;MYFfamily:2.35262147517;ATF5_CREB3:2.27869191905;EVI1:2.25037406688;PAX4:2.22490331583;KLF4:2.20463910166;MED-1{core}:2.19381542899;ALX1:2.17031292655;UFEwm:2.16247347318;HMGA1,2:2.11217881949;BREu{core}:2.10411900453;PRRX1,2:2.07816364556;LMO2:2.05751970176;POU6F1:2.05066636928;ZBTB16:1.99561591686;PAX6:1.92160128999;JUN:1.91099428271;MTF1:1.86562825469;PBX1:1.83720424101;MAFB:1.82957867618;GZF1:1.79935743593;CREB1:1.79890001419;ATF2:1.79120759764;DBP:1.76594894675;FOXQ1:1.76359261385;PAX8:1.74438417501;MTE{core}:1.68378781102;HIC1:1.63337472732;RFX1:1.62496875724;ZIC1..3:1.61787815942;RREB1:1.61260378705;TEF:1.54422148123;PAX5:1.53656710624;TFAP2B:1.48708554149;CDC5L:1.47690255085;TGIF1:1.43759481024;GATA4:1.43680651506;TFDP1:1.43601087216;NKX6-1,2:1.3596743766;GFI1B:1.337650431;CDX1,2,4:1.33566992231;ARID5B:1.31946406813;HOX{A4,D4}:1.27288506796;MZF1:1.2326399346;NRF1:1.1865842908;IKZF1:1.18479006281;NKX2-3_NKX2-5:1.17450775476;SMAD1..7,9:1.17009511456;NANOG:1.14821022305;MYOD1:1.13885757148;NFIL3:1.13638478144;ZNF384:1.09546475655;GTF2I:1.07891378201;FOXN1:1.07515798592;GLI1..3:1.0694455719;HOX{A5,B5}:1.04059617924;NKX2-2,8:1.01982136431;HAND1,2:0.941639659374;ONECUT1,2:0.940571275109;RFX2..5_RFXANK_RFXAP:0.918992668653;VSX1,2:0.906657102504;NR3C1:0.898850598324;TAL1_TCF{3,4,12}:0.897063661332;NKX3-2:0.8953675429;POU5F1:0.819493946699;TFAP2{A,C}:0.813873757025;STAT1,3:0.795973922897;bHLH_family:0.790047282336;IRF7:0.678734126604;ZEB1:0.669232904923;NFE2L2:0.629393375467;RBPJ:0.623551501528;PATZ1:0.603864497664;RORA:0.595725742737;SPZ1:0.541511783985;FOX{F1,F2,J1}:0.540045648899;NKX3-1:0.517593475414;SOX2:0.480036300991;ATF4:0.439629401427;PPARG:0.415791490713;FOXM1:0.374661986729;SREBF1,2:0.370514521578;FOXP1:0.355633078768;SOX{8,9,10}:0.327159941059;LHX3,4:0.308099677617;MAZ:0.287434795848;BPTF:0.276949061832;HES1:0.235030269369;NFE2L1:0.216420049058;ZNF143:0.213035917923;HIF1A:0.198317937453;GTF2A1,2:0.187142085431;ADNP_IRX_SIX_ZHX:0.142147022289;NFE2:0.0894123506045;STAT2,4,6:0.0838188627372;ESRRA:0.0533850152701;FOXA2:0.0351013081515;EN1,2:0.0311970714198;PAX2:0.0250446361274;FOXP3:0.0109128984416;SNAI1..3:-0.107105466238;MEF2{A,B,C,D}:-0.112484532064;IKZF2:-0.149248493924;HMX1:-0.209956968935;ATF6:-0.228055351604;FOXD3:-0.251957149973;NKX2-1,4:-0.281592914414;CRX:-0.29661259668;TOPORS:-0.331244057679;FOXL1:-0.370266484398;SOX17:-0.416810902647;NANOG{mouse}:-0.476326382408;ZNF238:-0.495377142618;GCM1,2:-0.502090676889;NFATC1..3:-0.518320952869;MYB:-0.526524467557;YY1:-0.629601546908;MYBL2:-0.708726335571;TFAP4:-0.713731037313;ZNF148:-0.728768320983;EP300:-0.72889097454;AR:-0.766660538876;HBP1_HMGB_SSRP1_UBTF:-0.767357629377;TLX2:-0.782037597184;HSF1,2:-0.798951281512;LEF1_TCF7_TCF7L1,2:-0.803190511729;TLX1..3_NFIC{dimer}:-0.812527519917;HNF1A:-0.883414887448;FOS_FOS{B,L1}_JUN{B,D}:-0.902732816981;CEBPA,B_DDIT3:-0.92247520939;RUNX1..3:-0.961011892566;NFKB1_REL_RELA:-0.977102467724;POU2F1..3:-0.981320195001;EBF1:-0.998049815504;GATA6:-1.02586306895;FOSL2:-1.05205452574;ZNF423:-1.0927640623;HNF4A_NR2F1,2:-1.09464832708;SPI1:-1.09680707193;BACH2:-1.17517251232;ALX4:-1.2051262473;SP1:-1.21234912663;SOX5:-1.21395087378;ELK1,4_GABP{A,B1}:-1.22449474194;TFCP2:-1.24141941902;NFY{A,B,C}:-1.24154070358;T:-1.24766508424;XCPE1{core}:-1.27150129328;PITX1..3:-1.30657412507;PAX1,9:-1.31309154206;NR5A1,2:-1.31366074621;NR6A1:-1.31989744268;SPIB:-1.34071015179;GFI1:-1.35855331701;IRF1,2:-1.38959663504;TBX4,5:-1.40233823844;PDX1:-1.40608458007;FOX{I1,J2}:-1.43206133101;ETS1,2:-1.47313468931;HLF:-1.49609203804;TEAD1:-1.5003744474;TBP:-1.51130315416;FOXO1,3,4:-1.54944174034;E2F1..5:-1.60424324683;DMAP1_NCOR{1,2}_SMARC:-1.70855774668;STAT5{A,B}:-1.73177368183;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.76212166106;ELF1,2,4:-1.81009832996;NR1H4:-1.82719081026;RXR{A,B,G}:-1.94248657549;SRF:-1.96915254029;NFIX:-2.04758922055;TP53:-2.1254121333;RXRA_VDR{dimer}:-2.19540858667;ESR1:-2.20563847695;FOX{D1,D2}:-2.34986294385;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.50276064766 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10237-104A3;search_select_hide=table117:10237-104A3 | |||
}} | }} |
Latest revision as of 13:56, 3 June 2020
Name: | visual cortex - wildtype |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs13033 |
Sample type: | tissues |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
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ExpandCAGE Accession numbers |
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ExpandDownload raw sequence, BAM & CTSS |
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13033
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13033
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13033
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13033
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011268 mouse visual cortex from wildtype- neonate N15 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002021 (occipital lobe)
0000411 (visual cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000316 (mouse neonate N15 sample)
0011268 (mouse visual cortex from wildtype- neonate N15 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)