FFCP PHASE1:Mm9::chr17:46247931..46247971,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:46247931..46247971,+
|short_description=p1@Mrps18a
|description=CAGE_peak_1_at_Mrps18a_5end
|association_with_transcript=0bp_to_ENSMUST00000024763,ENSMUST...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=68565 | |EntrezGene=68565 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=809 | |||
|TSSclassifier=NA | |||
|UniProt=Q5U5I3,D3Z603,Q99N85 | |UniProt=Q5U5I3,D3Z603,Q99N85 | ||
|association_with_transcript=0bp_to_ENSMUST00000024763,ENSMUST00000123646,ENSMUST00000131943,NM_026768,uc008crs.1_5end | |||
|cluster_id=chr17:46247931..46247971,+ | |||
|description=CAGE_peak_1_at_Mrps18a_5end | |||
|id=chr17:46247931..46247971,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.14e-18!115;CL:0000004!4.14e-18!115;CL:0000255!4.14e-18!115;CL:0002371!7.02e-16!118;CL:0002321!1.86e-14!70;CL:0000220!1.86e-14!70;CL:0000144!5.16e-14!121;CL:0000012!5.16e-14!121;CL:0000055!1.76e-11!50;CL:0002319!5.57e-11!43;CL:0000221!2.49e-10!44;CL:0000133!2.49e-10!44;CL:0000723!1.27e-09!91;CL:0000048!1.27e-09!91;CL:0000034!6.04e-09!97;CL:0000393!3.99e-07!39;CL:0000211!3.99e-07!39;CL:0000540!7.17e-07!33;CL:0000047!7.17e-07!33;CL:0000031!7.17e-07!33;CL:0000404!7.17e-07!33;CL:0000219!9.82e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.86e-14,70;CL:0002319,5.57e-11,43;CL:0000221,2.49e-10,44;CL:0000133,2.49e-10,44;CL:0000723,1.27e-09,91;CL:0000048,1.27e-09,91;CL:0000034,6.04e-09,97;CL:0000393,3.99e-07,39;CL:0000211,3.99e-07,39;CL:0000540,7.17e-07,33;CL:0000047,7.17e-07,33;CL:0000031,7.17e-07,33;CL:0000404,7.17e-07,33;CL:0000219,9.82e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.61e-11!75;UBERON:0001016!4.61e-11!75;UBERON:0001017!8.32e-11!73;UBERON:0005743!8.32e-11!73;UBERON:0002020!3.76e-08!34;UBERON:0001049!5.24e-07!52;UBERON:0005068!5.24e-07!52;UBERON:0006241!5.24e-07!52;UBERON:0007135!5.24e-07!52;UBERON:0002616!7.69e-07!49;UBERON:0002791!8.53e-07!29;UBERON:0003528!8.53e-07!29;UBERON:0001893!8.53e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.61e-11,75;UBERON:0001017,8.32e-11,73;UBERON:0002020,3.76e-08,34;UBERON:0000073,3.94e-08,54;UBERON:0010314,1.32e-07,92;UBERON:0001049,5.24e-07,52;UBERON:0005068,5.24e-07,52;UBERON:0006241,5.24e-07,52;UBERON:0007135,5.24e-07,52;UBERON:0003528,8.53e-07,29;UBERON:0002791,8.53e-07,29;UBERON:0001893,8.53e-07,29 | |||
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| ||
|short_description=p1@Mrps18a | |||
}} | }} |
Latest revision as of 13:21, 26 September 2015
Short description: | p1@Mrps18a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mrps18a_5end |
Coexpression cluster: | MCL_coexpression_mm9:809 |
Association with transcript: | 0bp_to_ENSMUST00000024763, ENSMUST00000123646, ENSMUST00000131943, NM_026768, uc008crs.1_5end |
EntrezGene: | Mrps18a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.86e-14 | 70 |
neural cell | 5.57e-11 | 43 |
ectodermal cell | 2.49e-10 | 44 |
neurectodermal cell | 2.49e-10 | 44 |
somatic stem cell | 1.27e-09 | 91 |
multi fate stem cell | 1.27e-09 | 91 |
stem cell | 6.04e-09 | 97 |
electrically responsive cell | 3.99e-07 | 39 |
electrically active cell | 3.99e-07 | 39 |
neuron | 7.17e-07 | 33 |
neuronal stem cell | 7.17e-07 | 33 |
neuroblast | 7.17e-07 | 33 |
electrically signaling cell | 7.17e-07 | 33 |
motile cell | 9.82e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.61e-11 | 75 |
central nervous system | 8.32e-11 | 73 |
gray matter | 3.76e-08 | 34 |
regional part of nervous system | 3.94e-08 | 54 |
structure with developmental contribution from neural crest | 1.32e-07 | 92 |
neural tube | 5.24e-07 | 52 |
neural rod | 5.24e-07 | 52 |
future spinal cord | 5.24e-07 | 52 |
neural keel | 5.24e-07 | 52 |
brain grey matter | 8.53e-07 | 29 |
regional part of telencephalon | 8.53e-07 | 29 |
telencephalon | 8.53e-07 | 29 |