FFCP PHASE1:Mm9::chr18:43552705..43552791,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:43552705..43552791,-
|short_description=p1@Dpysl3
|description=CAGE_peak_1_at_Dpysl3_5end
|association_with_transcript=193bp_to_NM_009468,uc008euh.2_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=22240 | |EntrezGene=22240 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q62188 | |UniProt=Q62188 | ||
|association_with_transcript=193bp_to_NM_009468,uc008euh.2_5end | |||
|cluster_id=chr18:43552705..43552791,- | |||
|description=CAGE_peak_1_at_Dpysl3_5end | |||
|id=chr18:43552705..43552791,- | |||
|ontology_enrichment_celltype=CL:0000540!1.40e-18!33;CL:0000047!1.40e-18!33;CL:0000031!1.40e-18!33;CL:0000404!1.40e-18!33;CL:0000393!1.22e-17!39;CL:0000211!1.22e-17!39;CL:0000221!4.30e-16!44;CL:0000133!4.30e-16!44;CL:0002319!6.84e-16!43;CL:0000055!1.54e-14!50;CL:0000117!5.16e-13!23;CL:0000337!5.16e-13!23;CL:0002321!2.20e-07!70;CL:0000220!2.20e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.23e-18,33;CL:0000047,1.23e-18,33;CL:0000031,1.23e-18,33;CL:0000404,1.23e-18,33;CL:0000393,1.08e-17,39;CL:0000211,1.08e-17,39;CL:0000221,3.86e-16,44;CL:0000133,3.86e-16,44;CL:0002319,6.14e-16,43;CL:0000117,4.73e-13,23;CL:0000337,4.73e-13,23;CL:0002321,2.24e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.95e-22!102;UBERON:0000924!5.95e-22!102;UBERON:0006601!5.95e-22!102;UBERON:0001017!1.57e-19!73;UBERON:0005743!1.57e-19!73;UBERON:0000073!2.17e-19!75;UBERON:0001016!2.17e-19!75;UBERON:0002346!4.57e-17!71;UBERON:0003075!4.57e-17!71;UBERON:0007284!4.57e-17!71;UBERON:0000033!1.40e-13!63;UBERON:0003056!1.85e-12!49;UBERON:0001049!1.65e-11!52;UBERON:0005068!1.65e-11!52;UBERON:0006241!1.65e-11!52;UBERON:0007135!1.65e-11!52;UBERON:0002020!3.26e-11!34;UBERON:0000955!2.04e-09!50;UBERON:0006238!2.04e-09!50;UBERON:0002616!3.01e-09!49;UBERON:0003080!5.20e-09!40;UBERON:0002780!8.97e-09!39;UBERON:0001890!8.97e-09!39;UBERON:0006240!8.97e-09!39;UBERON:0000468!2.09e-08!333;UBERON:0002791!2.28e-08!29;UBERON:0003528!2.28e-08!29;UBERON:0001893!2.28e-08!29;UBERON:0000479!9.71e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.68e-21,95;UBERON:0000924,1.68e-21,95;UBERON:0006601,1.68e-21,95;UBERON:0010314,1.90e-20,92;UBERON:0001017,1.37e-19,73;UBERON:0001016,1.90e-19,75;UBERON:0002346,6.66e-17,64;UBERON:0003075,6.66e-17,64;UBERON:0007284,6.66e-17,64;UBERON:0010371,8.12e-16,73;UBERON:0003056,1.71e-12,49;UBERON:0000073,6.26e-12,54;UBERON:0001049,1.53e-11,52;UBERON:0005068,1.53e-11,52;UBERON:0006241,1.53e-11,52;UBERON:0007135,1.53e-11,52;UBERON:0002020,3.03e-11,34;UBERON:0003080,4.92e-09,40;UBERON:0002780,8.49e-09,39;UBERON:0001890,8.49e-09,39;UBERON:0006240,8.49e-09,39;UBERON:0000955,9.59e-09,47;UBERON:0006238,9.59e-09,47;UBERON:0002616,1.41e-08,46;UBERON:0003528,2.16e-08,29;UBERON:0002791,2.16e-08,29;UBERON:0001893,2.16e-08,29;UBERON:0000922,4.64e-07,320 | |||
|phase1_expression=71.7466835029477,0,2.27499619694768,0.60492842261366,0,12.255186849568,7.2419918584613,0,0,0,0,0,0,0,0.666219523631325,0.202475267389826,0.699561878128147,0.157731082679119,0,0,7.65389611359628,0.198581902401771,0,17.1191892388945,15.5998311125676,0,3.4460959692726,1.939241094173,7.79096019771133,3.02436155711917,2.66076612786366,0,0,0,0,0,0,0,0,0,0,0,0,6.29484089877886,9.0225468785368,31.9371348761326,9.38869613217647,10.9012578190223,10.5449367712546,9.3326351555656,35.8365239360928,21.5628846547457,0.167782606057736,0,0,45.7921796143986,27.5072102341206,21.1425557833751,423.246036118279,524.230060458585,427.836197366671,26.4298735013923,21.3430751066673,0,0,0.7104801149461,8.68840320503374,10.7581125490035,191.41102432145,233.425267375493,202.753262742732,167.962778829437,182.879151907936,287.363414958282,298.36695127977,318.968918953677,39.6417171597799,42.3921962442823,50.9973690410728,553.658635891354,563.563884590843,489.658568323354,42.7149988472113,32.0774687718058,39.421947926417,341.474530563981,332.295502985106,483.52016247083,8.25415507331706,25.8454735565206,8.98579914975201,0,0.679971333707751,1.61910957491345,0,0.448026887097336,7.5839986871146,37.4946709671727,30.1351765339328,24.3804306412135,39.1544706979172,26.9485602570067,7.64415719119937,21.3320010945999,9.09262372247099,14.9482320630308,12.1325866803548,2.96878087269556,8.02707439306232,6.67989625791711,34.8705506799933,55.4127170528097,30.9024766323118,39.941499746445,37.8635636976969,2.63899841792318,1.73036477414062,25.1602881040646,6.19227386364912,12.9413479957927,10.1587098491781,8.24287930329878,5.59175283654366,3.80615036115011,6.49284791121711,1.78819938646014,0,0,0,44.4878199032323,18.7575247155637,304.46049516947,20.1636211423041,25.3158302757027,38.6485762880782,35.0441128226357,13.850153483643,9.70374370758726,2.52722758433675,15.3622554797126,30.9686654251235,86.6730933714193,101.915165469828,100.972227949929,96.0675368016749,101.209839025031,80.5834831213668,78.9045280753998,13.5807835547691,16.2631228944325,17.5951124163949,19.070028721199,21.409638190371,16.716103993064,13.5816210029243,5.57295947091781,0,0,0,61.7234802155796,74.8138131339697,63.5619076957382,63.9210786080068,63.5548468544114,40.4179835764931,40.9259742760718,30.5831677595566,34.445775998315,22.5446994381468,18.5509234409378,8.35008738322314,9.9415991449226,7.46470391989572,5.50246316917524,14.0894265537965,297.497234388511,2.97376904685418,3.43785736662608,17.4896365438892,28.1006372951131,28.995178797471,19.1599348392175,17.123109376055,23.7782032640699,5.69434873853414,19.5991756121573,13.069430857614,12.7332142106337,7.99352757188393,3.59527763461689,2.37751854862164,3.38540164532424,4.74169752382704,12.224590849241,5.63538678365402,4.88763186828754,4.26695471768777,7.36426108848345,6.45012678667424,5.16635517928608,3.29697328466887,1.85095745882701,0,4.00428253718626,3.14494392181125,0,0.608580364165509,1.4470629585145,1.01850340712568,0.575392274901621,0.648540907100142,0.549122826376163,1.43768206527355,1.48856379067401,0.312037673114561,0.757736633841335,0.358794827043824,0.482443521363367,7.39012760666419,15.3488043534093,6.35563408123901,5.09235257325564,3.28566347603903,2.68010011906905,1.6663054862021,4.87834119644497,7.40885177299098,9.08005227559977,7.33491935824441,9.34020893879707,12.6060036762104,7.95569822198314,0,0,5.4094070032094,12.9690270763224,61.1697747853487,53.4485290860447,4.59017847054691,5.04941854408746,185.518833016759,205.370779500032,207.237308618953,69.7788890021452,75.9743478620964,66.5229847353756,176.902276631929,232.343407039493,227.290472319251,33.4174169078679,20.1554920995741,9.97167380536629,14.4969393824683,19.7964147567043,0,8.01176099311439,7.25576536715402,4.52652191414155,4.72483028609236,4.61152721915891,6.20227903603731,6.5436071305951,5.70395805415554,1.8962205476149,2.10837217149998,1.03135543248187,2.7235168460303,38.3530130286691,22.8964870295475,20.7906923980645,12.5911565886014,34.7819194324038,39.9854120063154,29.5331000641161,3.75474732901937,4.44847348814022,9.92377791247329,5.27636009412736,8.07322133479528,8.02161901544473,9.66915986425405,11.6540038818993,3.78925087618806,60.8194990594472,1.70870880797853,10.7321171340876,7.9633646768976,2.63715839806567,2.46049609897845,2.51655990527175,0,0,0.138199973804424,4.77335309007557,29.8937513934173,24.8049749894755,23.9771856624399,18.6088583452877,20.5260809921407,14.0258920240214,14.1337409290324,8.37619014348895,2.72191443912765,54.6778595516495,1.69107881605257,5.53211220362722,6.9492565991981,11.4726201122988,12.6576627008176,11.1511042823914,14.5522975920735,8.72369378454466,6.29156066554265,2.65742532908607,2.01621004380506,4.74016680942267,12.3662381327,8.83314231617514,5.45667456506739,5.72885426135941,5.76175928865668,3.36547258655913,3.83992770653901,2.62512769865184,2.13379058634,2.01652370273681,2.14407337627455,2.30908419936791,2.57129184799452,8.38902419376282,0,0.358855426437903,0.839423081820392,29.944387074989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| |phase1_expression=71.7466835029477,0,2.27499619694768,0.60492842261366,0,12.255186849568,7.2419918584613,0,0,0,0,0,0,0,0.666219523631325,0.202475267389826,0.699561878128147,0.157731082679119,0,0,7.65389611359628,0.198581902401771,0,17.1191892388945,15.5998311125676,0,3.4460959692726,1.939241094173,7.79096019771133,3.02436155711917,2.66076612786366,0,0,0,0,0,0,0,0,0,0,0,0,6.29484089877886,9.0225468785368,31.9371348761326,9.38869613217647,10.9012578190223,10.5449367712546,9.3326351555656,35.8365239360928,21.5628846547457,0.167782606057736,0,0,45.7921796143986,27.5072102341206,21.1425557833751,423.246036118279,524.230060458585,427.836197366671,26.4298735013923,21.3430751066673,0,0,0.7104801149461,8.68840320503374,10.7581125490035,191.41102432145,233.425267375493,202.753262742732,167.962778829437,182.879151907936,287.363414958282,298.36695127977,318.968918953677,39.6417171597799,42.3921962442823,50.9973690410728,553.658635891354,563.563884590843,489.658568323354,42.7149988472113,32.0774687718058,39.421947926417,341.474530563981,332.295502985106,483.52016247083,8.25415507331706,25.8454735565206,8.98579914975201,0,0.679971333707751,1.61910957491345,0,0.448026887097336,7.5839986871146,37.4946709671727,30.1351765339328,24.3804306412135,39.1544706979172,26.9485602570067,7.64415719119937,21.3320010945999,9.09262372247099,14.9482320630308,12.1325866803548,2.96878087269556,8.02707439306232,6.67989625791711,34.8705506799933,55.4127170528097,30.9024766323118,39.941499746445,37.8635636976969,2.63899841792318,1.73036477414062,25.1602881040646,6.19227386364912,12.9413479957927,10.1587098491781,8.24287930329878,5.59175283654366,3.80615036115011,6.49284791121711,1.78819938646014,0,0,0,44.4878199032323,18.7575247155637,304.46049516947,20.1636211423041,25.3158302757027,38.6485762880782,35.0441128226357,13.850153483643,9.70374370758726,2.52722758433675,15.3622554797126,30.9686654251235,86.6730933714193,101.915165469828,100.972227949929,96.0675368016749,101.209839025031,80.5834831213668,78.9045280753998,13.5807835547691,16.2631228944325,17.5951124163949,19.070028721199,21.409638190371,16.716103993064,13.5816210029243,5.57295947091781,0,0,0,61.7234802155796,74.8138131339697,63.5619076957382,63.9210786080068,63.5548468544114,40.4179835764931,40.9259742760718,30.5831677595566,34.445775998315,22.5446994381468,18.5509234409378,8.35008738322314,9.9415991449226,7.46470391989572,5.50246316917524,14.0894265537965,297.497234388511,2.97376904685418,3.43785736662608,17.4896365438892,28.1006372951131,28.995178797471,19.1599348392175,17.123109376055,23.7782032640699,5.69434873853414,19.5991756121573,13.069430857614,12.7332142106337,7.99352757188393,3.59527763461689,2.37751854862164,3.38540164532424,4.74169752382704,12.224590849241,5.63538678365402,4.88763186828754,4.26695471768777,7.36426108848345,6.45012678667424,5.16635517928608,3.29697328466887,1.85095745882701,0,4.00428253718626,3.14494392181125,0,0.608580364165509,1.4470629585145,1.01850340712568,0.575392274901621,0.648540907100142,0.549122826376163,1.43768206527355,1.48856379067401,0.312037673114561,0.757736633841335,0.358794827043824,0.482443521363367,7.39012760666419,15.3488043534093,6.35563408123901,5.09235257325564,3.28566347603903,2.68010011906905,1.6663054862021,4.87834119644497,7.40885177299098,9.08005227559977,7.33491935824441,9.34020893879707,12.6060036762104,7.95569822198314,0,0,5.4094070032094,12.9690270763224,61.1697747853487,53.4485290860447,4.59017847054691,5.04941854408746,185.518833016759,205.370779500032,207.237308618953,69.7788890021452,75.9743478620964,66.5229847353756,176.902276631929,232.343407039493,227.290472319251,33.4174169078679,20.1554920995741,9.97167380536629,14.4969393824683,19.7964147567043,0,8.01176099311439,7.25576536715402,4.52652191414155,4.72483028609236,4.61152721915891,6.20227903603731,6.5436071305951,5.70395805415554,1.8962205476149,2.10837217149998,1.03135543248187,2.7235168460303,38.3530130286691,22.8964870295475,20.7906923980645,12.5911565886014,34.7819194324038,39.9854120063154,29.5331000641161,3.75474732901937,4.44847348814022,9.92377791247329,5.27636009412736,8.07322133479528,8.02161901544473,9.66915986425405,11.6540038818993,3.78925087618806,60.8194990594472,1.70870880797853,10.7321171340876,7.9633646768976,2.63715839806567,2.46049609897845,2.51655990527175,0,0,0.138199973804424,4.77335309007557,29.8937513934173,24.8049749894755,23.9771856624399,18.6088583452877,20.5260809921407,14.0258920240214,14.1337409290324,8.37619014348895,2.72191443912765,54.6778595516495,1.69107881605257,5.53211220362722,6.9492565991981,11.4726201122988,12.6576627008176,11.1511042823914,14.5522975920735,8.72369378454466,6.29156066554265,2.65742532908607,2.01621004380506,4.74016680942267,12.3662381327,8.83314231617514,5.45667456506739,5.72885426135941,5.76175928865668,3.36547258655913,3.83992770653901,2.62512769865184,2.13379058634,2.01652370273681,2.14407337627455,2.30908419936791,2.57129184799452,8.38902419376282,0,0.358855426437903,0.839423081820392,29.944387074989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| ||
|short_description=p1@Dpysl3 | |||
}} | }} |
Latest revision as of 07:12, 27 September 2015
Short description: | p1@Dpysl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dpysl3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 193bp_to_NM_009468, uc008euh.2_5end |
EntrezGene: | Dpysl3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.23e-18 | 33 |
neuronal stem cell | 1.23e-18 | 33 |
neuroblast | 1.23e-18 | 33 |
electrically signaling cell | 1.23e-18 | 33 |
electrically responsive cell | 1.08e-17 | 39 |
electrically active cell | 1.08e-17 | 39 |
ectodermal cell | 3.86e-16 | 44 |
neurectodermal cell | 3.86e-16 | 44 |
neural cell | 6.14e-16 | 43 |
CNS neuron (sensu Vertebrata) | 4.73e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.73e-13 | 23 |
embryonic cell | 2.24e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.68e-21 | 95 |
ectoderm | 1.68e-21 | 95 |
presumptive ectoderm | 1.68e-21 | 95 |
structure with developmental contribution from neural crest | 1.90e-20 | 92 |
central nervous system | 1.37e-19 | 73 |
nervous system | 1.90e-19 | 75 |
neurectoderm | 6.66e-17 | 64 |
neural plate | 6.66e-17 | 64 |
presumptive neural plate | 6.66e-17 | 64 |
ecto-epithelium | 8.12e-16 | 73 |
pre-chordal neural plate | 1.71e-12 | 49 |
regional part of nervous system | 6.26e-12 | 54 |
neural tube | 1.53e-11 | 52 |
neural rod | 1.53e-11 | 52 |
future spinal cord | 1.53e-11 | 52 |
neural keel | 1.53e-11 | 52 |
gray matter | 3.03e-11 | 34 |
anterior neural tube | 4.92e-09 | 40 |
regional part of forebrain | 8.49e-09 | 39 |
forebrain | 8.49e-09 | 39 |
future forebrain | 8.49e-09 | 39 |
brain | 9.59e-09 | 47 |
future brain | 9.59e-09 | 47 |
regional part of brain | 1.41e-08 | 46 |
brain grey matter | 2.16e-08 | 29 |
regional part of telencephalon | 2.16e-08 | 29 |
telencephalon | 2.16e-08 | 29 |
embryo | 4.64e-07 | 320 |