FFCP PHASE1:Mm9::chr5:138182337..138182413,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:138182337..138182413,-
|short_description=p1@6430598A04Rik
|description=CAGE_peak_1_at_6430598A04Rik_5end
|association_with_transcript=-7bp_to_ENSMUST00000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=243300 | |EntrezGene=243300 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=E9PXJ0 | |UniProt=E9PXJ0 | ||
|association_with_transcript=-7bp_to_ENSMUST00000149512_5end | |||
|cluster_id=chr5:138182337..138182413,- | |||
|description=CAGE_peak_1_at_6430598A04Rik_5end | |||
|id=chr5:138182337..138182413,- | |||
|ontology_enrichment_celltype=CL:0002319!9.80e-16!43;CL:0000221!1.43e-15!44;CL:0000133!1.43e-15!44;CL:0000117!1.86e-15!23;CL:0000337!1.86e-15!23;CL:0000540!6.50e-15!33;CL:0000047!6.50e-15!33;CL:0000031!6.50e-15!33;CL:0000404!6.50e-15!33;CL:0000055!4.13e-13!50;CL:0000393!6.47e-13!39;CL:0000211!6.47e-13!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.15e-15,43;CL:0000117,1.44e-15,23;CL:0000337,1.44e-15,23;CL:0000221,1.66e-15,44;CL:0000133,1.66e-15,44;CL:0000540,5.07e-15,33;CL:0000047,5.07e-15,33;CL:0000031,5.07e-15,33;CL:0000404,5.07e-15,33;CL:0000393,5.24e-13,39;CL:0000211,5.24e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.39e-32!73;UBERON:0005743!1.39e-32!73;UBERON:0000073!2.02e-31!75;UBERON:0001016!2.02e-31!75;UBERON:0002346!4.67e-28!71;UBERON:0003075!4.67e-28!71;UBERON:0007284!4.67e-28!71;UBERON:0001049!1.46e-27!52;UBERON:0005068!1.46e-27!52;UBERON:0006241!1.46e-27!52;UBERON:0007135!1.46e-27!52;UBERON:0004121!7.39e-27!102;UBERON:0000924!7.39e-27!102;UBERON:0006601!7.39e-27!102;UBERON:0000955!2.66e-25!50;UBERON:0006238!2.66e-25!50;UBERON:0002616!3.39e-25!49;UBERON:0000033!1.45e-24!63;UBERON:0007811!7.98e-24!86;UBERON:0000153!4.56e-23!94;UBERON:0003056!1.27e-22!49;UBERON:0003080!2.13e-21!40;UBERON:0002780!8.22e-21!39;UBERON:0001890!8.22e-21!39;UBERON:0006240!8.22e-21!39;UBERON:0002020!7.39e-20!34;UBERON:0002791!1.27e-16!29;UBERON:0003528!1.27e-16!29;UBERON:0001893!1.27e-16!29;UBERON:0000956!8.94e-12!21;UBERON:0001869!8.94e-12!21;UBERON:0000203!8.94e-12!21;UBERON:0000468!1.03e-09!333;UBERON:0002619!2.44e-09!17;UBERON:0000922!7.24e-08!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.77e-33,73;UBERON:0001016,1.87e-31,75;UBERON:0002346,1.79e-29,64;UBERON:0003075,1.79e-29,64;UBERON:0007284,1.79e-29,64;UBERON:0000073,6.37e-29,54;UBERON:0001049,8.96e-28,52;UBERON:0005068,8.96e-28,52;UBERON:0006241,8.96e-28,52;UBERON:0007135,8.96e-28,52;UBERON:0004121,5.62e-27,95;UBERON:0000924,5.62e-27,95;UBERON:0006601,5.62e-27,95;UBERON:0000955,6.86e-24,47;UBERON:0006238,6.86e-24,47;UBERON:0002616,8.66e-24,46;UBERON:0010371,1.61e-23,73;UBERON:0003056,8.56e-23,49;UBERON:0003080,1.47e-21,40;UBERON:0002780,5.74e-21,39;UBERON:0001890,5.74e-21,39;UBERON:0006240,5.74e-21,39;UBERON:0002020,5.25e-20,34;UBERON:0010314,6.96e-20,92;UBERON:0003528,9.60e-17,29;UBERON:0002791,9.60e-17,29;UBERON:0001893,9.60e-17,29;UBERON:0000956,7.39e-12,21;UBERON:0001869,7.39e-12,21;UBERON:0000203,7.39e-12,21;UBERON:0000922,2.00e-09,320;UBERON:0002619,2.11e-09,17 | |||
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| ||
|short_description=p1@6430598A04Rik | |||
}} | }} |
Latest revision as of 14:58, 25 September 2015
Short description: | p1@6430598A04Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_6430598A04Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -7bp_to_ENSMUST00000149512_5end |
EntrezGene: | 6430598A04Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.15e-15 | 43 |
CNS neuron (sensu Vertebrata) | 1.44e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.44e-15 | 23 |
ectodermal cell | 1.66e-15 | 44 |
neurectodermal cell | 1.66e-15 | 44 |
neuron | 5.07e-15 | 33 |
neuronal stem cell | 5.07e-15 | 33 |
neuroblast | 5.07e-15 | 33 |
electrically signaling cell | 5.07e-15 | 33 |
electrically responsive cell | 5.24e-13 | 39 |
electrically active cell | 5.24e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.77e-33 | 73 |
nervous system | 1.87e-31 | 75 |
neurectoderm | 1.79e-29 | 64 |
neural plate | 1.79e-29 | 64 |
presumptive neural plate | 1.79e-29 | 64 |
regional part of nervous system | 6.37e-29 | 54 |
neural tube | 8.96e-28 | 52 |
neural rod | 8.96e-28 | 52 |
future spinal cord | 8.96e-28 | 52 |
neural keel | 8.96e-28 | 52 |
ectoderm-derived structure | 5.62e-27 | 95 |
ectoderm | 5.62e-27 | 95 |
presumptive ectoderm | 5.62e-27 | 95 |
brain | 6.86e-24 | 47 |
future brain | 6.86e-24 | 47 |
regional part of brain | 8.66e-24 | 46 |
ecto-epithelium | 1.61e-23 | 73 |
pre-chordal neural plate | 8.56e-23 | 49 |
anterior neural tube | 1.47e-21 | 40 |
regional part of forebrain | 5.74e-21 | 39 |
forebrain | 5.74e-21 | 39 |
future forebrain | 5.74e-21 | 39 |
gray matter | 5.25e-20 | 34 |
structure with developmental contribution from neural crest | 6.96e-20 | 92 |
brain grey matter | 9.60e-17 | 29 |
regional part of telencephalon | 9.60e-17 | 29 |
telencephalon | 9.60e-17 | 29 |
cerebral cortex | 7.39e-12 | 21 |
cerebral hemisphere | 7.39e-12 | 21 |
pallium | 7.39e-12 | 21 |
embryo | 2.00e-09 | 320 |
regional part of cerebral cortex | 2.11e-09 | 17 |