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|namespace=
|namespace=
|def="Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator, Wikipedia:Foramina_of_the_skull]
|def="Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator, Wikipedia:Foramina_of_the_skull]
|xref=AAO:0010438;;FMA:53165;;SCTID:276742007;;ZFA:0005386
|xref=AAO:0010438;;FMA:53165;;http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png;;SCTID:276742007;;TAO:0001736;;ZFA:0005386
|is_a=UBERON:0004111;;UBERON:0004120
|is_a=UBERON:0004111
|synonym="foramen" BROAD [ZFA:0005386];;"foramen of skull" RELATED [Wikipedia:Foramina_of_the_skull]
|synonym="foramen" BROAD [ZFA:0005386];;"foramen of skull" RELATED [Wikipedia:Foramina_of_the_skull]
|comment=in FMA this is a conduit space, not a conduit. Note there may be some additional disambiguation required: foramen is used loosely in the sense of any opening (e.g. foramen primum). FMA appears to use cranial conduit (undefined) in the sense of any foramen of the cranium. TAO def refers to bone, not necessarily cranial
|comment=AO notes: in FMA and ZFA this is a conduit space, not a conduit. Note there may be some additional disambiguation required: foramen is used loosely in the sense of any opening (e.g. foramen primum). FMA appears to use cranial conduit (undefined) in the sense of any foramen of the skull (includes mental foramen, which is not in the cranium proper).
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0003128
|part_of=UBERON:0003129
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Latest revision as of 13:40, 27 June 2012

Name:cranial conduit
Definition:"Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator, Wikipedia:Foramina_of_the_skull]
Xrefs:
links:

AAO:0010438
FMA:53165
[ Gray193.png Gray193.png]
SCTID:276742007
TAO:0001736

ZFA:0005386
Synonyms: "foramen" BROAD [ZFA:0005386]
"foramen of skull" RELATED [Wikipedia:Foramina_of_the_skull]
Comments:AO notes: in FMA and ZFA this is a conduit space, not a conduit. Note there may be some additional disambiguation required: foramen is used loosely in the sense of any opening (e.g. foramen primum). FMA appears to use cranial conduit (undefined) in the sense of any foramen of the skull (includes mental foramen, which is not in the cranium proper).
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004111(anatomical conduit)
part_of:UBERON:0003129(skull)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005744 (cranial conduit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_e2a38317b38acd5179c97834d64e7f64p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_e2a38317b38acd5179c97834d64e7f64p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_e2a38317b38acd5179c97834d64e7f64p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_e2a38317b38acd5179c97834d64e7f64p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_e2a38317b38acd5179c97834d64e7f64p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_e2a38317b38acd5179c97834d64e7f64p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_e2a38317b38acd5179c97834d64e7f64p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_e2a38317b38acd5179c97834d64e7f64p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_e2a38317b38acd5179c97834d64e7f64p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_e2a38317b38acd5179c97834d64e7f64p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_e2a38317b38acd5179c97834d64e7f64p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_e2a38317b38acd5179c97834d64e7f64p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_e2a38317b38acd5179c97834d64e7f64p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_e2a38317b38acd5179c97834d64e7f64p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_e2a38317b38acd5179c97834d64e7f64p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_e2a38317b38acd5179c97834d64e7f64p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_e2a38317b38acd5179c97834d64e7f64p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_e2a38317b38acd5179c97834d64e7f64p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e2a38317b38acd5179c97834d64e7f64p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_e2a38317b38acd5179c97834d64e7f64p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_e2a38317b38acd5179c97834d64e7f64p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_e2a38317b38acd5179c97834d64e7f64p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_e2a38317b38acd5179c97834d64e7f64p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_e2a38317b38acd5179c97834d64e7f64p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e2a38317b38acd5179c97834d64e7f64p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_e2a38317b38acd5179c97834d64e7f64p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_e2a38317b38acd5179c97834d64e7f64p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_e2a38317b38acd5179c97834d64e7f64p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_e2a38317b38acd5179c97834d64e7f64p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_e2a38317b38acd5179c97834d64e7f64p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_e2a38317b38acd5179c97834d64e7f64p1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_e2a38317b38acd5179c97834d64e7f64p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_e2a38317b38acd5179c97834d64e7f64p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_e2a38317b38acd5179c97834d64e7f64p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_e2a38317b38acd5179c97834d64e7f64p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_e2a38317b38acd5179c97834d64e7f64p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_e2a38317b38acd5179c97834d64e7f64p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_e2a38317b38acd5179c97834d64e7f64p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_e2a38317b38acd5179c97834d64e7f64p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_e2a38317b38acd5179c97834d64e7f64p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_e2a38317b38acd5179c97834d64e7f64p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_e2a38317b38acd5179c97834d64e7f64p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_e2a38317b38acd5179c97834d64e7f64p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_e2a38317b38acd5179c97834d64e7f64p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_e2a38317b38acd5179c97834d64e7f64p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_e2a38317b38acd5179c97834d64e7f64p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_e2a38317b38acd5179c97834d64e7f64p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_e2a38317b38acd5179c97834d64e7f64p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_e2a38317b38acd5179c97834d64e7f64p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_e2a38317b38acd5179c97834d64e7f64p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e2a38317b38acd5179c97834d64e7f64p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_e2a38317b38acd5179c97834d64e7f64p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e2a38317b38acd5179c97834d64e7f64p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_e2a38317b38acd5179c97834d64e7f64p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_e2a38317b38acd5179c97834d64e7f64p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_e2a38317b38acd5179c97834d64e7f64p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e2a38317b38acd5179c97834d64e7f64p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_e2a38317b38acd5179c97834d64e7f64p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_e2a38317b38acd5179c97834d64e7f64p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_e2a38317b38acd5179c97834d64e7f64p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_e2a38317b38acd5179c97834d64e7f64p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_e2a38317b38acd5179c97834d64e7f64p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e2a38317b38acd5179c97834d64e7f64p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_e2a38317b38acd5179c97834d64e7f64p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_e2a38317b38acd5179c97834d64e7f64p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_e2a38317b38acd5179c97834d64e7f64p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e2a38317b38acd5179c97834d64e7f64p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_e2a38317b38acd5179c97834d64e7f64p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_e2a38317b38acd5179c97834d64e7f64p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_e2a38317b38acd5179c97834d64e7f64p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_e2a38317b38acd5179c97834d64e7f64p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_e2a38317b38acd5179c97834d64e7f64p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_e2a38317b38acd5179c97834d64e7f64p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e2a38317b38acd5179c97834d64e7f64p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_e2a38317b38acd5179c97834d64e7f64p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_e2a38317b38acd5179c97834d64e7f64p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_e2a38317b38acd5179c97834d64e7f64p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e2a38317b38acd5179c97834d64e7f64p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_e2a38317b38acd5179c97834d64e7f64p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_e2a38317b38acd5179c97834d64e7f64p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_e2a38317b38acd5179c97834d64e7f64p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_e2a38317b38acd5179c97834d64e7f64p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e2a38317b38acd5179c97834d64e7f64p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_e2a38317b38acd5179c97834d64e7f64p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_e2a38317b38acd5179c97834d64e7f64p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_e2a38317b38acd5179c97834d64e7f64p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_e2a38317b38acd5179c97834d64e7f64p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_e2a38317b38acd5179c97834d64e7f64p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_e2a38317b38acd5179c97834d64e7f64p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_e2a38317b38acd5179c97834d64e7f64p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_e2a38317b38acd5179c97834d64e7f64p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_e2a38317b38acd5179c97834d64e7f64p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_e2a38317b38acd5179c97834d64e7f64p@chr13:37195838..37195870, -

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