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UBERON:0003129

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Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_40d70c2e6c9363196e5764093c9b0a2ep4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_40d70c2e6c9363196e5764093c9b0a2ep7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Otogl
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2ep9@Otof
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Grxcr1
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_40d70c2e6c9363196e5764093c9b0a2ep4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_40d70c2e6c9363196e5764093c9b0a2ep15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2ep21@Espn
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2ep5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:128881546..128881553, -

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