Personal tools

FF:11470-119C3: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|id=FF:11470-119C3
|DRA_sample_Accession=dog_CAGE@SAMD00053787
|name=Canine Aortic Smooth Muscle cells - differentiated, donor1
|accession_numbers=dog_CAGE;DRX057311;DRR063070;DRZ007597;DRZ007610
|sample_id=11470
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_tube_id=119C3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|rna_box=119
|rna_position=C3
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Dog (Canis lupus familaris)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.11
|rna_od260/280=1.94
|sample_cell_type=
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.2
|rna_weight_ug=5.5
|rna_concentration=0.183
|sample_note=
|profile_hcage=CNhs12204,LSID976,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000016,FF:0000001,FF:0000017,FF:0000213
|comment=
|created_by=
|creation_date=
|def=
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 37:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|id=FF:11470-119C3
|is_a=EFO:0002091;;FF:0000213
|is_obsolete=
|library_id=CNhs12204
|name=Canine Aortic Smooth Muscle cells - differentiated, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12204,LSID976,release010,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=119
|rna_catalog_number=
|rna_concentration=0.183
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.2
|rna_lot_number=
|rna_od260/230=1.11
|rna_od260/280=1.94
|rna_position=C3
|rna_rin=
|rna_sample_type=
|rna_tube_id=119C3
|rna_weight_ug=5.5
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=
|sample_collaboration=
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11470
|sample_note=
|sample_sex=
|sample_species=Canis lupus familaris
|sample_strain=
|sample_tissue=
|top_motifs=
|top_motifs=
|xref=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:11470-119C3;search_select_hide=table117:FF:11470-119C3
}}
}}

Latest revision as of 09:38, 5 June 2020


Name:Canine Aortic Smooth Muscle cells - differentiated, donor1
Species:Canis lupus familaris
Library ID:CNhs12204
Sample type:primary cells
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.2

CAGE Accession numbers
MethodSample accession id
dog_CAGE  SAMD00053787
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12204 dog_CAGE DRX057311 DRR063070
Accession ID

Library idBAMCTSS
CNhs12204 DRZ007597 DRZ007610



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000017 (canine aortic smooth muscle cell)
0000213 (canine aortic smooth muscle cell- differentiated)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11470-119C3&oldid=4578648"