FFCP PHASE1:Hg19::chr12:8834188..8834202,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:8834188..8834202,+ to FFCP PHASE1:Hg19::chr12:8834188..8834202,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57494 | |EntrezGene=57494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29228 | |HGNC=29228 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000538758_5end | |||
|cluster_id=chr12:8834188..8834202,+ | |||
|description=CAGE_peak_3_at_RIMKLB_5end | |||
|id=chr12:8834188..8834202,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.74e-14!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.54e-11;7!CL:0000586;2.54e-11;7!CL:0002541;3.18e-07;3!CL:0002166;3.90e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.52e-19,253;CL:0000039,2.66e-11,7;CL:0000586,2.66e-11,7;CL:0002541,3.53e-07,3;CL:0002166,3.91e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.72e-09;29 | |||
|ontology_enrichment_disease=DOID:305!5.05e-11!106;DOID:0050687!7.93e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.50e-18,106;DOID:0050687,2.56e-12,143;DOID:162,9.26e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.29e-12!219;UBERON:0007023!6.90e-11!115;UBERON:0000065!2.89e-10!53;UBERON:0008947!7.42e-10!38;UBERON:0003258!7.42e-10!38;UBERON:0001737!1.50e-09!9;UBERON:0000477!1.44e-08!286;UBERON:0001004!1.62e-08!72;UBERON:0004111!1.65e-08!241;UBERON:0000468!1.80e-08!659;UBERON:0000062!3.30e-08!511;UBERON:0004119!7.26e-08!169;UBERON:0000925!7.26e-08!169;UBERON:0006595!7.26e-08!169;UBERON:0005631!1.64e-07!14;UBERON:0000158!1.64e-07!14;UBERON:0003124!2.15e-07!7;UBERON:0000467!2.33e-07!625;UBERON:0000480!2.94e-07!626;UBERON:0000072!6.64e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.59e-19;9!UBERON:0001557;8.59e-19;9!UBERON:0000065;3.09e-09;44!UBERON:0001987;1.16e-08;4!UBERON:0003124;3.18e-07;3!UBERON:0000920;3.18e-07;3!UBERON:0000072;6.03e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,7.81e-19,9;UBERON:0003124,3.54e-14,7;UBERON:0001557,3.26e-11,19;UBERON:0005631,2.25e-10,14;UBERON:0000158,2.25e-10,14;UBERON:0000065,1.58e-09,54;UBERON:0001987,1.15e-08,4;UBERON:0004340,1.15e-08,4;UBERON:0008947,2.60e-08,38;UBERON:0003258,2.60e-08,38;UBERON:0001004,5.89e-08,74;UBERON:0000920,3.53e-07,3;UBERON:0003975,3.58e-07,22;UBERON:0000072,6.51e-07,47 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.704772020479856,1.0007329835313,0,1.74467704820074,0,0,0,0.245733936501509,1.39560233594486,3.49506195408276,0.263766978228454,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0,0.589405839739707,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0.39752481473341,0,1.38856200643038,0,0.419499436209906,0,0,3.87625138753993,1.06729878806013,2.67776490211736,0,0.760272105718513,0.24406205754817,0.367663080345869,2.43042584364528,0.0892997282840798,0,0.112611480483322,0,0,0.366403487860815,0,0,0.436094052142534,0.496971951695318,0.506522046658319,0.132409180813219,0.286836620748814,0,0,0,0.49333509683432,0,0.538842688278752,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0,0,0.386521706326594,2.72746120590835,0.573609190778008,2.19552671033272,0.397589304964456,0.929551542956147,1.96956004529204,0.756962552626885,0,0,0,0,0,0,8.51808960286876,9.4407426443737,13.014595613708,7.61028411853518,6.972142210957,9.49082476444386,6.87639671616838,11.1846235121447,13.0814033361773,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0,0.548751427043128,0,0.402115889646523,0.462942225792648,0,0,0,0,0,0,0.462985512576611,1.14152491340759,0,0,0,0,0,6.56136837907439,8.39910640994298,5.67100388969546,0.358234090811393,0.581267877027924,0,0,0,0,0.144119953416961,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0.871533458600294,2.29937879718731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,3.63753085735511,4.99306318531491,3.0239029332968,1.24053903909388,13.1977297027734,0,0.384417447767103,2.55853624533352,2.89537058058494,1.48418066444991,0,0,0,0,0,0.362578348774867,1.00253235151642,6.26150724764095,0,0,0,0,0.385076685522074,0,0,0,0,0.340187410553031,0,0,0,0,0,1.66215201785745,0,0,0,0,0.328014645699706,0,11.128429257954,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96683796866347,5.38132188622297,16.9724907617797,0.809262246844399,0.464845549297286,0.62962469366128,0,0.308033580176089,0,0,0.18532421910392,0.715624433709956,0,0,0,0,0,0,0,0,0.274537029736055,0,0,1.58510321173008,0.421258456238981,0,0.243713489631284,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,1.08890984861323,10.638249487776,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81239927631679,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56731081233197,0,0,0,2.3874448473769,0.296964680832639,0.921482106297696,0,0.281338832821026,0.111308705022906,0,0,0,0,0,1.43176155503017,0,0,1.07842021376792,5.19161406559267,0,0.295930216910801,0,0,0.969332746095218,0.371072392647405,1.99613798001194,0,0,1.44999915086959,1.137934482855,0,2.36387681767936,0,0,0,0,0.361789315876224,0,0.552896299656123,0.295547618953547,0.438770794307945,5.99161549354446,7.52888219104458,0.307801034015188,1.13942055847001,0,2.42345639906385,55.0842175644581,9.25103363222567,3.11431817566332,21.3213910407454,0,0,0,0,0,0,0,0,0.421996129056054,11.2630637629812,0,0,0,0.353830258013357,0,0,0,0,0.202203398942031,0,0.468528891450678,0,2.15231080825299,0,0,0,0,0.126373159256976,0.751617097072463,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0.195984794828755,1.13176968554523,0,0.687944129886466,9.48212046633035,13.009898441341,8.45789207648055,0.0969890164884194,0,0.225980740780532,0.137041924646751,0,0.316553979779393,5.67099009930929,0,0.85381197895741,0.19980960958213,0,0,0,4.32164393964449,0,16.2628883885589,0.135904206073614,0.104602846312333,0,0,0,0.547621515567972,0,0,0,0.279282401272254,0,2.87149209830726,0.798716001995964,0.429226048136571,0.223171457441873,0.268733889946905,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0.643012593860077,0.550157746388935,2.49264202817511,0,0.77380195455795,0.607495566580247,0,0.315222829196793,0.944182586429966,0.105600336519406,0.35857467866569,4.2221343410278,0,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0.52893040697076,2.73738940614927,0,0.640724475406168,1.72924735609633,0.828478110694391,0,0,0,0,0,0.2506898940227,0.612691153526923,0,0,0,0.854183854313742,1.001527445652,1.14681839138014,0.110929051536852,0.496771223531068,0,0.74988244777264,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310874401165561,0.443565449968902,0,0,0,0,0,0,0,0,0.813741466409323,0,0.214821114084977,0,0,0.400027764663154,0,0,0,0,1.92997432237433,1.56596575179127,0,0,0.734210113519403,0,5.86722749605847,5.26281718988897,0,0.964570191354574,0.337884881306145,0,0,0,0.691292180758654,0,0,0,0,0.737318726261158,0.422624246717254,0,0,0,0,0,2.23807212351111,0,0,0,0,0.1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| ||
|short_description=p3@RIMKLB | |||
}} | }} |
Latest revision as of 05:31, 25 September 2015
Short description: | p3@RIMKLB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RIMKLB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000538758_5end |
EntrezGene: | RIMKLB |
HGNC: | 29228 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.52e-19 | 253 |
germ line cell | 2.66e-11 | 7 |
germ cell | 2.66e-11 | 7 |
chorionic membrane mesenchymal stem cell | 3.53e-07 | 3 |
epithelial cell of Malassez | 3.91e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 7.81e-19 | 9 |
chorion | 3.54e-14 | 7 |
upper respiratory tract | 3.26e-11 | 19 |
extraembryonic membrane | 2.25e-10 | 14 |
membranous layer | 2.25e-10 | 14 |
respiratory tract | 1.58e-09 | 54 |
placenta | 1.15e-08 | 4 |
allantois | 1.15e-08 | 4 |
respiratory primordium | 2.60e-08 | 38 |
endoderm of foregut | 2.60e-08 | 38 |
respiratory system | 5.89e-08 | 74 |
egg chorion | 3.53e-07 | 3 |
internal female genitalia | 3.58e-07 | 22 |
segment of respiratory tract | 6.51e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.50e-18 | 106 |
cell type cancer | 2.56e-12 | 143 |
cancer | 9.26e-07 | 235 |