FFCP PHASE1:Hg19::chr15:42565770..42565836,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:42565770..42565836,+ to FFCP PHASE1:Hg19::chr15:42565770..42565836,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2595 | |EntrezGene=2595 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4139 | |HGNC=4139 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_uc001zph.2_5end | |||
|cluster_id=chr15:42565770..42565836,+ | |||
|description=CAGE_peak_3_at_GANC_5end | |||
|id=chr15:42565770..42565836,+ | |||
|ontology_enrichment_celltype=CL:0000838!4.93e-09!52;CL:0000542!1.89e-08!53;CL:0000051!1.89e-08!53;CL:0000791!6.42e-08!18;CL:0000789!6.42e-08!18;CL:0002420!6.42e-08!18;CL:0002419!6.42e-08!18;CL:0000790!6.42e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.90e-08;18!CL:0000789;3.90e-08;18!CL:0002419;3.90e-08;18!CL:0000084;5.79e-07;25!CL:0000625;9.25e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.50e-09,52;CL:0000542,1.49e-08,53;CL:0000051,1.49e-08,53;CL:0000791,5.72e-08,18;CL:0000789,5.72e-08,18;CL:0002420,5.72e-08,18;CL:0002419,5.72e-08,18;CL:0000790,5.72e-08,18;CL:0000084,7.01e-07,25;CL:0000827,7.01e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;3.90e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.06e-26!57;UBERON:0005068!1.06e-26!57;UBERON:0006241!1.06e-26!57;UBERON:0007135!1.06e-26!57;UBERON:0000073!1.76e-23!94;UBERON:0001016!1.76e-23!94;UBERON:0002616!4.08e-23!59;UBERON:0001017!6.25e-23!82;UBERON:0005743!3.02e-22!86;UBERON:0000955!8.95e-22!69;UBERON:0006238!8.95e-22!69;UBERON:0002780!4.24e-21!41;UBERON:0001890!4.24e-21!41;UBERON:0006240!4.24e-21!41;UBERON:0003080!7.49e-20!42;UBERON:0002346!2.06e-18!90;UBERON:0003075!2.71e-18!86;UBERON:0007284!2.71e-18!86;UBERON:0002020!1.29e-17!34;UBERON:0003528!1.29e-17!34;UBERON:0001893!1.35e-17!34;UBERON:0002791!4.87e-17!33;UBERON:0001869!2.75e-16!32;UBERON:0007023!3.79e-14!115;UBERON:0003056!5.92e-14!61;UBERON:0000924!4.22e-13!173;UBERON:0006601!4.22e-13!173;UBERON:0002619!7.14e-13!22;UBERON:0004121!8.26e-13!169;UBERON:0000956!2.13e-12!25;UBERON:0000203!2.13e-12!25;UBERON:0001950!1.03e-11!20;UBERON:0000033!4.48e-11!123;UBERON:0000153!5.99e-11!129;UBERON:0007811!5.99e-11!129;UBERON:0003076!5.25e-08!15;UBERON:0003057!5.25e-08!15;UBERON:0000025!5.52e-08!194;UBERON:0002308!8.76e-07!9;UBERON:0000125!8.76e-07!9;UBERON:0002420!8.82e-07!9;UBERON:0007245!8.82e-07!9;UBERON:0010009!8.82e-07!9;UBERON:0010011!8.82e-07!9;UBERON:0000454!8.82e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.92e-16;34!UBERON:0002780;2.23e-16;41!UBERON:0001890;2.23e-16;41!UBERON:0003528;2.34e-16;34!UBERON:0002020;2.34e-16;34!UBERON:0000073;3.89e-16;53!UBERON:0002616;3.89e-16;53!UBERON:0002791;6.11e-16;32!UBERON:0001869;7.12e-16;32!UBERON:0002619;1.56e-13;22!UBERON:0000956;2.27e-13;25!UBERON:0000203;2.27e-13;25!UBERON:0001950;2.34e-12;20!UBERON:0001017;1.17e-10;75!UBERON:0000955;2.56e-10;68!UBERON:0001016;3.88e-09;83!UBERON:0002420;3.50e-07;9!UBERON:0007245;3.50e-07;9!UBERON:0010009;3.50e-07;9!UBERON:0010011;3.50e-07;9!UBERON:0000454;3.50e-07;9!UBERON:0000125;3.72e-07;9!UBERON:0002308;3.72e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.67e-28,56;UBERON:0005068,3.67e-28,56;UBERON:0006241,3.67e-28,56;UBERON:0007135,3.67e-28,56;UBERON:0000073,1.53e-26,53;UBERON:0002616,1.53e-26,53;UBERON:0001016,2.02e-25,89;UBERON:0001017,3.66e-24,81;UBERON:0000955,4.49e-23,68;UBERON:0006238,4.49e-23,68;UBERON:0002780,2.97e-21,41;UBERON:0001890,2.97e-21,41;UBERON:0003080,2.97e-21,41;UBERON:0006240,2.97e-21,41;UBERON:0002346,6.98e-19,86;UBERON:0003075,8.66e-19,82;UBERON:0007284,8.66e-19,82;UBERON:0003528,9.66e-18,34;UBERON:0002020,9.66e-18,34;UBERON:0001893,1.01e-17,34;UBERON:0002791,1.65e-16,32;UBERON:0001869,2.11e-16,32;UBERON:0003056,6.73e-15,61;UBERON:0007023,3.79e-14,114;UBERON:0010371,5.57e-14,104;UBERON:0002619,5.82e-13,22;UBERON:0004121,1.07e-12,171;UBERON:0000924,1.07e-12,171;UBERON:0006601,1.07e-12,171;UBERON:0000956,1.75e-12,25;UBERON:0000203,1.75e-12,25;UBERON:0001950,8.54e-12,20;UBERON:0011216,2.56e-10,223;UBERON:0010314,5.42e-09,132;UBERON:0000025,1.71e-08,192;UBERON:0003076,4.67e-08,15;UBERON:0003057,4.67e-08,15;UBERON:0000125,7.96e-07,9;UBERON:0002308,7.96e-07,9;UBERON:0002420,8.01e-07,9;UBERON:0007245,8.01e-07,9;UBERON:0010009,8.01e-07,9;UBERON:0010011,8.01e-07,9;UBERON:0000454,8.01e-07,9 | |||
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| ||
|short_description=p3@GANC | |||
}} | }} |
Latest revision as of 15:44, 17 September 2015
Short description: | p3@GANC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GANC_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_uc001zph.2_5end |
EntrezGene: | GANC |
HGNC: | 4139 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.50e-09 | 52 |
lymphocyte | 1.49e-08 | 53 |
common lymphoid progenitor | 1.49e-08 | 53 |
mature alpha-beta T cell | 5.72e-08 | 18 |
alpha-beta T cell | 5.72e-08 | 18 |
immature T cell | 5.72e-08 | 18 |
mature T cell | 5.72e-08 | 18 |
immature alpha-beta T cell | 5.72e-08 | 18 |
T cell | 7.01e-07 | 25 |
pro-T cell | 7.01e-07 | 25 |