FFCP PHASE1:Hg19::chr17:16118835..16118867,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:16118835..16118867,- to FFCP PHASE1:Hg19::chr17:16118835..16118867,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9611 | |EntrezGene=9611 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7672 | |HGNC=7672 | ||
|TSSclassifier=strong | |||
|UniProt=O75376,E7EW50,E7EVU5,E7EU93,Q05CG3,Q3B773,Q6NTH1 | |UniProt=O75376,E7EW50,E7EVU5,E7EU93,Q05CG3,Q3B773,Q6NTH1 | ||
|association_with_transcript=0bp_to_ENST00000268712,ENST00000411510,ENST00000436828,ENST00000458113,ENST00000460276,uc002gpo.2,uc002gps.1,uc002gpu.2,uc010coz.1,uc010cpa.1,uc010cpb.1_5end | |||
|cluster_id=chr17:16118835..16118867,- | |||
|description=CAGE_peak_1_at_NCOR1_5end | |||
|id=chr17:16118835..16118867,- | |||
|ontology_enrichment_celltype=CL:0000738!3.80e-10!140;CL:0000037!2.02e-08!172;CL:0000566!2.02e-08!172;CL:0002032!7.47e-08!165;CL:0000837!7.47e-08!165;CL:0002031!7.74e-08!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.14e-10,136;CL:0000037,2.86e-08,168;CL:0002031,1.04e-07,120;CL:0002032,1.05e-07,161;CL:0000837,1.05e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.43e-22!115;UBERON:0001049!4.26e-14!57;UBERON:0005068!4.26e-14!57;UBERON:0006241!4.26e-14!57;UBERON:0007135!4.26e-14!57;UBERON:0003080!8.16e-14!42;UBERON:0002780!2.61e-13!41;UBERON:0001890!2.61e-13!41;UBERON:0006240!2.61e-13!41;UBERON:0001017!9.78e-13!82;UBERON:0000955!4.93e-12!69;UBERON:0006238!4.93e-12!69;UBERON:0000073!9.01e-12!94;UBERON:0001016!9.01e-12!94;UBERON:0002616!2.05e-11!59;UBERON:0005743!2.39e-11!86;UBERON:0001893!5.05e-11!34;UBERON:0002020!7.65e-11!34;UBERON:0003528!7.65e-11!34;UBERON:0002791!8.45e-11!33;UBERON:0001869!2.18e-10!32;UBERON:0002346!1.52e-08!90;UBERON:0000956!1.64e-08!25;UBERON:0000203!1.64e-08!25;UBERON:0003075!2.49e-08!86;UBERON:0007284!2.49e-08!86;UBERON:0002619!5.74e-08!22;UBERON:0001950!1.26e-07!20;UBERON:0003056!6.85e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.68e-10;41!UBERON:0001890;6.68e-10;41!UBERON:0002791;1.05e-09;32!UBERON:0001869;2.09e-09;32!UBERON:0001893;2.56e-09;34!UBERON:0003528;2.84e-09;34!UBERON:0002020;2.84e-09;34!UBERON:0000956;1.69e-08;25!UBERON:0000203;1.69e-08;25!UBERON:0000073;3.56e-08;53!UBERON:0002616;3.56e-08;53!UBERON:0002619;6.14e-08;22!UBERON:0001950;1.36e-07;20!UBERON:0007023;9.54e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.37e-22,114;UBERON:0001049,1.28e-13,56;UBERON:0005068,1.28e-13,56;UBERON:0006241,1.28e-13,56;UBERON:0007135,1.28e-13,56;UBERON:0002780,2.61e-13,41;UBERON:0001890,2.61e-13,41;UBERON:0003080,2.61e-13,41;UBERON:0006240,2.61e-13,41;UBERON:0000073,9.90e-13,53;UBERON:0002616,9.90e-13,53;UBERON:0001016,1.09e-12,89;UBERON:0001017,2.58e-12,81;UBERON:0000955,1.33e-11,68;UBERON:0006238,1.33e-11,68;UBERON:0001893,5.05e-11,34;UBERON:0003528,7.65e-11,34;UBERON:0002020,7.65e-11,34;UBERON:0002791,1.39e-10,32;UBERON:0001869,2.18e-10,32;UBERON:0000956,1.64e-08,25;UBERON:0000203,1.64e-08,25;UBERON:0002346,4.53e-08,86;UBERON:0002619,5.74e-08,22;UBERON:0003075,7.38e-08,82;UBERON:0007284,7.38e-08,82;UBERON:0001950,1.26e-07,20;UBERON:0011216,7.04e-07,223;UBERON:0003056,7.18e-07,61 | |||
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| ||
|short_description=p1@NCOR1 | |||
}} | }} |
Latest revision as of 19:24, 18 September 2015
Short description: | p1@NCOR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NCOR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000268712, ENST00000411510, ENST00000436828, ENST00000458113, ENST00000460276, uc002gpo.2, uc002gps.1, uc002gpu.2, uc010coz.1, uc010cpa.1, uc010cpb.1_5end |
EntrezGene: | NCOR1 |
HGNC: | 7672 |
UniProt: | O75376E7EW50E7EVU5E7EU93Q05CG3Q3B773Q6NTH1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.14e-10 | 136 |
hematopoietic stem cell | 2.86e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 1.04e-07 | 120 |
hematopoietic oligopotent progenitor cell | 1.05e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.05e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.37e-22 | 114 |
neural tube | 1.28e-13 | 56 |
neural rod | 1.28e-13 | 56 |
future spinal cord | 1.28e-13 | 56 |
neural keel | 1.28e-13 | 56 |
regional part of forebrain | 2.61e-13 | 41 |
forebrain | 2.61e-13 | 41 |
anterior neural tube | 2.61e-13 | 41 |
future forebrain | 2.61e-13 | 41 |
regional part of nervous system | 9.90e-13 | 53 |
regional part of brain | 9.90e-13 | 53 |
nervous system | 1.09e-12 | 89 |
central nervous system | 2.58e-12 | 81 |
brain | 1.33e-11 | 68 |
future brain | 1.33e-11 | 68 |
telencephalon | 5.05e-11 | 34 |
brain grey matter | 7.65e-11 | 34 |
gray matter | 7.65e-11 | 34 |
regional part of telencephalon | 1.39e-10 | 32 |
cerebral hemisphere | 2.18e-10 | 32 |
cerebral cortex | 1.64e-08 | 25 |
pallium | 1.64e-08 | 25 |
neurectoderm | 4.53e-08 | 86 |
regional part of cerebral cortex | 5.74e-08 | 22 |
neural plate | 7.38e-08 | 82 |
presumptive neural plate | 7.38e-08 | 82 |
neocortex | 1.26e-07 | 20 |
organ system subdivision | 7.04e-07 | 223 |
pre-chordal neural plate | 7.18e-07 | 61 |