FFCP PHASE1:Hg19::chr18:46065446..46065463,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:46065446..46065463,+ to FFCP PHASE1:Hg19::chr18:46065446..46065463,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9811 | |EntrezGene=9811 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23925 | |HGNC=23925 | ||
|TSSclassifier=strong | |||
|UniProt=O43310 | |UniProt=O43310 | ||
|association_with_transcript=19bp_to_ENST00000382998,NM_001142397,NM_014772,uc002ldc.2,uc002ldd.2_5end | |||
|cluster_id=chr18:46065446..46065463,+ | |||
|description=CAGE_peak_5_at_CTIF_5end | |||
|id=chr18:46065446..46065463,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.61e-10!75 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.86e-10;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.72e-09,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.23e-14!57;UBERON:0005068!1.23e-14!57;UBERON:0006241!1.23e-14!57;UBERON:0007135!1.23e-14!57;UBERON:0007023!3.97e-14!115;UBERON:0002616!7.38e-14!59;UBERON:0003075!6.53e-13!86;UBERON:0007284!6.53e-13!86;UBERON:0002346!1.31e-12!90;UBERON:0004121!1.53e-12!169;UBERON:0000924!1.86e-12!173;UBERON:0006601!1.86e-12!173;UBERON:0000955!2.23e-12!69;UBERON:0006238!2.23e-12!69;UBERON:0000073!4.08e-12!94;UBERON:0001016!4.08e-12!94;UBERON:0000468!8.85e-12!659;UBERON:0000467!9.10e-12!625;UBERON:0001017!9.24e-12!82;UBERON:0000480!1.02e-11!626;UBERON:0003080!1.57e-11!42;UBERON:0000475!1.69e-11!365;UBERON:0005743!2.42e-11!86;UBERON:0004111!2.93e-11!241;UBERON:0000025!4.95e-11!194;UBERON:0002780!6.03e-11!41;UBERON:0001890!6.03e-11!41;UBERON:0006240!6.03e-11!41;UBERON:0000119!1.08e-10!312;UBERON:0000483!1.49e-10!309;UBERON:0000477!2.27e-10!286;UBERON:0000033!3.68e-10!123;UBERON:0002020!1.23e-09!34;UBERON:0003528!1.23e-09!34;UBERON:0000153!7.41e-09!129;UBERON:0007811!7.41e-09!129;UBERON:0003056!1.12e-08!61;UBERON:0001893!1.49e-08!34;UBERON:0001869!1.76e-08!32;UBERON:0002791!2.30e-08!33;UBERON:0002619!1.11e-07!22;UBERON:0000062!1.71e-07!511;UBERON:0000064!2.53e-07!219;UBERON:0000956!2.58e-07!25;UBERON:0000203!2.58e-07!25;UBERON:0000481!3.27e-07!347;UBERON:0000923!9.86e-07!604;UBERON:0005291!9.86e-07!604;UBERON:0006598!9.86e-07!604;UBERON:0002532!9.86e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.12e-10;22!UBERON:0003528;1.29e-09;34!UBERON:0002020;1.29e-09;34!UBERON:0002780;2.77e-09;41!UBERON:0001890;2.77e-09;41!UBERON:0002791;3.72e-09;32!UBERON:0000073;7.79e-09;53!UBERON:0002616;7.79e-09;53!UBERON:0001950;1.69e-08;20!UBERON:0000956;1.93e-08;25!UBERON:0000203;1.93e-08;25!UBERON:0001869;2.31e-08;32!UBERON:0001893;1.05e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.77e-16,56;UBERON:0005068,2.77e-16,56;UBERON:0006241,2.77e-16,56;UBERON:0007135,2.77e-16,56;UBERON:0000073,1.77e-15,53;UBERON:0002616,1.77e-15,53;UBERON:0002780,1.02e-12,41;UBERON:0001890,1.02e-12,41;UBERON:0003080,1.02e-12,41;UBERON:0006240,1.02e-12,41;UBERON:0010314,1.53e-12,132;UBERON:0003528,2.70e-12,34;UBERON:0002020,2.70e-12,34;UBERON:0000955,6.00e-12,68;UBERON:0006238,6.00e-12,68;UBERON:0001016,1.31e-11,89;UBERON:0001017,3.28e-11,81;UBERON:0003075,4.07e-11,82;UBERON:0007284,4.07e-11,82;UBERON:0007023,8.68e-11,114;UBERON:0002346,1.29e-10,86;UBERON:0002791,1.60e-10,32;UBERON:0002619,2.52e-10,22;UBERON:0001869,1.16e-09,32;UBERON:0010371,1.31e-09,104;UBERON:0001893,1.58e-09,34;UBERON:0001950,1.39e-08,20;UBERON:0000956,1.61e-08,25;UBERON:0000203,1.61e-08,25;UBERON:0004121,2.69e-08,171;UBERON:0000924,2.69e-08,171;UBERON:0006601,2.69e-08,171;UBERON:0003056,3.79e-08,61;UBERON:0000025,8.15e-08,192 | |||
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|phase1_expression=0.181678379270557,3.21150785836475,1.83240725324762,1.0007329835313,1.34088328328186,3.48935409640147,5.06599756336621,1.89515962028049,2.08948502559871,0.982935746006035,1.39560233594486,0.655324116390517,0,0.247532705920093,1.65698687863958,0.672325146451775,0,0.730310090387373,0.487932798790507,0.369363174230364,1.02000345622126,0.313454721478088,0.286235987131057,0.547497700291537,0.627713197974014,0,0.0821005894499457,0,0,0,0.309632246632152,0,1.50602959389125,0,0,0,0,0,0.601633342410425,0.651032612147555,0.447830948479849,0.647787332037959,0.515151135268373,0.145398238779565,0,0.242584061187816,0.232429036905685,0.822335776043652,0,0.575384784644301,0,0,0.344745680736619,0.645484683583826,0,0.564727018627814,0.545812300115692,0,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0.434377689410233,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0,1.15877215168659,0,0,0.472674085820339,0.221729397462564,0.351339142772504,0.654895377488563,0.364295288292542,0.370784442784429,0,0.174129737299267,0.664789802594326,0.238490624305342,0,0,0.79504962946682,0.860234595106124,0.694281003215189,0,0.419499436209906,1.37559020970034,0.417989933073621,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0.735326160691737,1.62028389576352,0.267899184852239,1.12264686313085,0.112611480483322,1.53316637465883,0,0.366403487860815,0,0,0,1.98788780678127,0.12663051166458,0.662045904066094,0.860509862246441,2.4826786753885,1.12135520028461,1.06748995729705,1.72667283892012,0,1.21239604862719,0.653847612453835,0.605429710579726,0,0.937285727335186,0.624320153660641,0.570471821544449,0.597794722207204,0.587172493218824,0.647491777472526,0.702254033511242,0.204154171254893,1.35117749042945,0.826606249406124,1.18800285728205,0.989067717114227,0.910161361938026,2.15585442544872,0.168336113954066,0.375355559615893,1.10825646193673,2.19488810440419,2.45190236639216,0.901428353439581,0.113432183160021,1.61450672119976,0,0.211931901159562,1.50045548042201,0.721367704669072,2.57640540045629,1.48893485065272,2.19409231913646,1.07180705677318,2.01947019395292,0.368199594569197,1.93975268182574,0.710019185033229,1.0075209822764,0.339121184620975,0.386521706326594,0.272746120590835,0.573609190778008,0,0,0,0.10366105501537,0.252320850875628,0,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,1.44375896333917,0.118306800039844,0.674338760312407,0,0.220587945464788,0,0,0.134831308160164,0,0,0,0,0.8231480226628,1.47008711385542,0,0.982827216677626,2.36315962672562,0,0,0.686271241194102,0.329250856225877,0,0.301586917234893,0.185176890317059,0.325808305310325,3.11980435583874,0,0.34779121492523,0.234817388471643,0.721832238805369,0.462985512576611,0.570762456703795,0,0,0,0.234004265139238,0.148631162288728,0,0.671928512795438,0.141775097242386,0.447792613514241,0.290633938513962,1.53353071666084,0,0,0,0,0.12624243342638,0.507983154337352,0,0,0,0.102827492703324,0,0,0.560655421726804,0.87192013766656,0.22001485746285,0.517086863031111,0,0.845302752556,0.797814349754612,6.24044621468197,0,4.25547396069835,0.532844358032199,0.142977993658148,0,0.823240336780769,0.325736184293735,0.355391948742546,1.58390374586686,0.904318131178758,0.871533458600294,1.09970290300263,0,0,0,0.239624855491583,3.44585807502342,4.27910715122155,0,1.84928690295345,0.537182889719687,0.112085143993527,0,0,0,0.254094624222463,0,0,0.670065061337395,1.27587750330633,0,0,0,0.24538298343828,0,0.271265023699736,1.66376689224646,1.60586089917446,0.788512075169673,2.22568688486155,1.20378439891088,2.27407504055985,0,0,0.553107505625109,0.521301686808497,1.76221041716467,2.05886054286514,0,0.215714200818617,0.106727557803444,0.303127571446259,0,0.907170879989041,0.744323423456331,1.84154367945675,1.68396056659844,0.768834895534206,1.53512174720011,1.28683136914886,4.45254199334973,0.771048469013278,0.177561725313127,0.0821271560138091,0.519254429183621,0.697262270759755,0,1.40354529212299,1.28913384510255,0.114814448164607,1.0925470080403,1.44236856455367,0,0.539107359730903,0,0,0.105551628892876,1.13733384070897,0.170093705276516,1.29549549661284,0,0,0.501689773854853,0,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0.656029291399411,0,0.206082023295445,0.183138929636687,0.330037999682352,0,0,0,0.096670718292122,0.462145851343933,0.307007349452259,0.413509717453592,0,0.435050081742686,0.426133137080504,0.445160178233687,0.165284915360978,0.576570202095319,1.65896526242959,1.6185244936888,0.929691098594572,2.83331112147576,0,0,2.66153015158511,0,0,0.858749320451947,0.744316738719335,0.632758849437452,1.71567174531442,0.767693373934002,0,0.318203247925937,0,0.179872457583315,0.54907405947211,0.471249609382746,0.404364963146632,0,1.26377536871694,1.46290121726877,0.731140468893853,1.05650146756755,0.272999822815972,1.27264888758341,1.130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| ||
|short_description=p5@CTIF | |||
}} | }} |
Latest revision as of 16:30, 19 September 2015
Short description: | p5@CTIF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CTIF_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000382998, NM_001142397, NM_014772, uc002ldc.2, uc002ldd.2_5end |
EntrezGene: | CTIF |
HGNC: | 23925 |
UniProt: | O43310 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.72e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.77e-16 | 56 |
neural rod | 2.77e-16 | 56 |
future spinal cord | 2.77e-16 | 56 |
neural keel | 2.77e-16 | 56 |
regional part of nervous system | 1.77e-15 | 53 |
regional part of brain | 1.77e-15 | 53 |
regional part of forebrain | 1.02e-12 | 41 |
forebrain | 1.02e-12 | 41 |
anterior neural tube | 1.02e-12 | 41 |
future forebrain | 1.02e-12 | 41 |
structure with developmental contribution from neural crest | 1.53e-12 | 132 |
brain grey matter | 2.70e-12 | 34 |
gray matter | 2.70e-12 | 34 |
brain | 6.00e-12 | 68 |
future brain | 6.00e-12 | 68 |
nervous system | 1.31e-11 | 89 |
central nervous system | 3.28e-11 | 81 |
neural plate | 4.07e-11 | 82 |
presumptive neural plate | 4.07e-11 | 82 |
adult organism | 8.68e-11 | 114 |
neurectoderm | 1.29e-10 | 86 |
regional part of telencephalon | 1.60e-10 | 32 |
regional part of cerebral cortex | 2.52e-10 | 22 |
cerebral hemisphere | 1.16e-09 | 32 |
ecto-epithelium | 1.31e-09 | 104 |
telencephalon | 1.58e-09 | 34 |
neocortex | 1.39e-08 | 20 |
cerebral cortex | 1.61e-08 | 25 |
pallium | 1.61e-08 | 25 |
ectoderm-derived structure | 2.69e-08 | 171 |
ectoderm | 2.69e-08 | 171 |
presumptive ectoderm | 2.69e-08 | 171 |
pre-chordal neural plate | 3.79e-08 | 61 |
tube | 8.15e-08 | 192 |