FFCP PHASE1:Hg19::chr19:55458860..55458904,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:55458860..55458904,- to FFCP PHASE1:Hg19::chr19:55458860..55458904,-: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=199713 | |EntrezGene=199713 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22947 | |HGNC=22947 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WX94,E7EX89 | |UniProt=Q8WX94,E7EX89 | ||
|association_with_transcript=0bp_to_ENST00000328092,ENST00000340844,ENST00000399724,ENST00000448121,NM_001127255,NM_139176,NM_206828,uc002qig.3,uc002qih.3,uc002qii.3,uc010esk.2_5end | |||
|cluster_id=chr19:55458860..55458904,- | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_1_at_NLRP7_5end | |||
|id=chr19:55458860..55458904,- | |||
|ontology_enrichment_celltype=CL:0000039!3.64e-49!7;CL:0000586!3.64e-49!7;CL:0002322!1.91e-35!5;CL:0000540!5.27e-11!6;CL:0000031!5.27e-11!6;CL:0000404!5.27e-11!6;CL:0000047!2.25e-08!8;CL:0000148!5.82e-07!10;CL:0000541!5.82e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.78e-68;7!CL:0000586;1.78e-68;7!CL:0002322;1.82e-65;5!CL:0002321;6.02e-22;15!CL:0000148;1.52e-12;10!CL:0000540;1.26e-09;6!CL:0000404;1.26e-09;6!CL:0000147;4.01e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.78e-68,7;CL:0000586,1.78e-68,7;CL:0002322,1.39e-65,5;CL:0000148,1.49e-12,10;CL:0000541,1.49e-12,10;CL:0000540,1.44e-09,6;CL:0000031,1.44e-09,6;CL:0000404,1.44e-09,6;CL:0000147,3.96e-09,14;CL:0000047,2.14e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.44e-22;10!UBERON:0005564;5.44e-22;10!CL:0000031;1.26e-09;6 | |||
|ontology_enrichment_disease=DOID:3095!1.27e-19!22;DOID:2994!1.27e-19!22;DOID:1799!3.33e-08!1;DOID:10165!3.33e-08!1;DOID:1798!3.33e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.23e-29;22!DOID:2994;3.23e-29;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.10e-29,22;DOID:2994,3.10e-29,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!7.49e-15!8;UBERON:0003135!7.75e-11!11;UBERON:0003101!5.45e-08!22;UBERON:0000079!5.45e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.18e-27;8!UBERON:0003135;5.02e-20;11!UBERON:0000922;2.33e-13;49!UBERON:0000991;1.26e-10;21!UBERON:0003101;3.73e-10;22!UBERON:0000079;3.73e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.18e-27,8;UBERON:0003135,5.02e-20,11;UBERON:0000991,1.26e-10,21;UBERON:0009196,1.26e-10,21;UBERON:0009117,1.26e-10,21;UBERON:0005564,1.26e-10,21;UBERON:0004176,3.73e-10,22;UBERON:0003101,3.73e-10,22;UBERON:0000079,3.73e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14710600840624,1.85541675650079,5.22872742912833,4.25010325563019,3.28017106138317,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,108.134471158,1.43612231055635,0.108647371922008,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6291088960398,0,0,0,0,0,0,0,0.964518890790115,1.2378549293751,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52971800749174,0,209.791022779256,121.316701990564,517.827758878851,89.5025915273779,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14710600840624,1.85541675650079,5.22872742912833,4.25010325563019,3.28017106138317,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,108.134471158,1.43612231055635,0.108647371922008,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6291088960398,0,0,0,0,0,0,0,0.964518890790115,1.2378549293751,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52971800749174,0,209.791022779256,121.316701990564,517.827758878851,89.5025915273779,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | ||
|short_description=p1@NLRP7 | |||
}} | }} |
Latest revision as of 23:24, 19 September 2015
Short description: | p1@NLRP7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NLRP7_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | 0bp_to_ENST00000328092, ENST00000340844, ENST00000399724, ENST00000448121, NM_001127255, NM_139176, NM_206828, uc002qig.3, uc002qih.3, uc002qii.3, uc010esk.2_5end |
EntrezGene: | NLRP7 |
HGNC: | 22947 |
UniProt: | Q8WX94E7EX89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.78e-68 | 7 |
germ cell | 1.78e-68 | 7 |
embryonic stem cell | 1.39e-65 | 5 |
melanocyte | 1.49e-12 | 10 |
melanoblast | 1.49e-12 | 10 |
neuron | 1.44e-09 | 6 |
neuroblast | 1.44e-09 | 6 |
electrically signaling cell | 1.44e-09 | 6 |
pigment cell | 3.96e-09 | 14 |
neuronal stem cell | 2.14e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
testis | 2.18e-27 | 8 |
male reproductive organ | 5.02e-20 | 11 |
gonad | 1.26e-10 | 21 |
indifferent external genitalia | 1.26e-10 | 21 |
indifferent gonad | 1.26e-10 | 21 |
gonad primordium | 1.26e-10 | 21 |
external genitalia | 3.73e-10 | 22 |
male organism | 3.73e-10 | 22 |
male reproductive system | 3.73e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.10e-29 | 22 |
germ cell cancer | 3.10e-29 | 22 |