FFCP PHASE1:Hg19::chr1:6550625..6550646,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:6550625..6550646,- to FFCP PHASE1:Hg19::chr1:6550625..6550646,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57449 | |EntrezGene=57449 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29105 | |HGNC=29105 | ||
|TSSclassifier=strong | |||
|UniProt=O94827 | |UniProt=O94827 | ||
|association_with_transcript=0bp_to_ENST00000340850,ENST00000377725,NM_001042664,uc001anl.1,uc009vmb.1_5end | |||
|cluster_id=chr1:6550625..6550646,- | |||
|coexpression_cluster_id=C1451 | |||
|description=CAGE_peak_3_at_PLEKHG5_5end | |||
|id=chr1:6550625..6550646,- | |||
|ontology_enrichment_celltype=CL:0000066!3.86e-26!254;CL:0002321!3.88e-23!248;CL:0000220!5.36e-23!246;CL:0002076!7.92e-14!43;CL:0000076!4.68e-10!62;CL:0000223!2.81e-09!59;CL:0000222!6.22e-09!119;CL:0002368!1.25e-08!13;CL:0000055!1.88e-08!180;CL:0000359!3.72e-08!32;CL:0000192!5.09e-08!42;CL:0000514!5.09e-08!42;CL:0000183!1.57e-07!59;CL:0000187!9.20e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.70e-12;42!CL:0002368;9.05e-11;13!CL:0000359;1.65e-09;32!CL:0002159;2.74e-09;14!CL:0002251;2.90e-08;20!CL:1000449;1.82e-07;15!CL:0000622;2.93e-07;5!CL:0000071;7.95e-07;18!CL:0002681;8.75e-07;12!CL:0002584;8.75e-07;12!CL:0002139;9.53e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.68e-22,253;CL:0002321,1.36e-19,250;CL:0002076,2.31e-16,42;CL:0000076,2.00e-11,63;CL:0000223,7.64e-11,58;CL:0002368,8.03e-11,13;CL:0000359,2.18e-10,32;CL:0002159,1.96e-09,14;CL:0002251,2.53e-08,20;CL:1000449,3.16e-07,15;CL:0000622,3.26e-07,5;CL:0000071,6.73e-07,18;CL:0002546,6.73e-07,18;CL:0002139,8.36e-07,24;CL:0000192,8.76e-07,43;CL:0000514,8.76e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002546;7.95e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;3.27e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.75e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.13e-14!365;UBERON:0000119!5.65e-14!312;UBERON:0000483!5.70e-14!309;UBERON:0001637!5.58e-13!42;UBERON:0003509!5.58e-13!42;UBERON:0004572!5.58e-13!42;UBERON:0002049!2.30e-12!79;UBERON:0007798!2.30e-12!79;UBERON:0001981!8.25e-12!60;UBERON:0007500!8.25e-12!60;UBERON:0004537!8.25e-12!60;UBERON:0006965!8.25e-12!60;UBERON:0000055!2.11e-11!69;UBERON:0002100!5.21e-11!216;UBERON:0000464!1.29e-10!104;UBERON:0004573!1.44e-10!33;UBERON:0004571!1.44e-10!33;UBERON:0000481!2.19e-10!347;UBERON:0004872!3.84e-10!84;UBERON:0003914!5.71e-10!118;UBERON:0003104!1.52e-09!238;UBERON:0009142!1.52e-09!238;UBERON:0000486!3.38e-09!82;UBERON:0000467!4.28e-09!625;UBERON:0004111!5.61e-09!241;UBERON:0000480!6.61e-09!626;UBERON:0000468!1.51e-08!659;UBERON:0000922!5.58e-08!612;UBERON:0002050!7.47e-08!605;UBERON:0005423!7.47e-08!605;UBERON:0000923!1.05e-07!604;UBERON:0005291!1.05e-07!604;UBERON:0006598!1.05e-07!604;UBERON:0002532!1.05e-07!604;UBERON:0003102!1.85e-07!95;UBERON:0000914!3.27e-07!83;UBERON:0002329!3.27e-07!83;UBERON:0003077!3.27e-07!83;UBERON:0003059!3.27e-07!83;UBERON:0007282!3.27e-07!83;UBERON:0009618!3.27e-07!83;UBERON:0007285!3.27e-07!83;UBERON:0004290!7.72e-07!70;UBERON:0005256!8.46e-07!143;UBERON:0000064!8.67e-07!219;UBERON:0007196!9.18e-07!14;UBERON:0001558!9.18e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.31e-15;42!UBERON:0003509;3.31e-15;42!UBERON:0004572;3.31e-15;42!UBERON:0004573;9.18e-14;33!UBERON:0004571;9.18e-14;33!UBERON:0003914;5.61e-11;74!UBERON:0007500;5.29e-10;56!UBERON:0001981;5.29e-10;56!UBERON:0004537;5.29e-10;56!UBERON:0000055;4.17e-09;65!UBERON:0000025;3.73e-08;93!UBERON:0006555;1.82e-07;15!UBERON:0004819;1.82e-07;15!UBERON:0001285;1.82e-07;15!UBERON:0007684;1.82e-07;15!UBERON:0000947;2.17e-07;21!UBERON:0010191;2.17e-07;21!UBERON:0006554;4.02e-07;30!UBERON:0001008;4.02e-07;30!UBERON:0000119;7.58e-07;139!UBERON:0004638;7.95e-07;18!UBERON:0001986;7.95e-07;18!UBERON:0004852;7.95e-07;18!UBERON:0001225;8.75e-07;12!UBERON:0008987;8.75e-07;12 | |||
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|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,1.47440361900905,1.39560233594486,0.436882744260345,1.84636884759917,1.23766352960047,0.331397375727916,0.672325146451775,0.602694528023977,1.46062018077475,1.95173119516203,1.23121058076788,0.612002073732759,0.313454721478088,0,0.958120975510189,0.125542639594803,0.305653622991805,0.656804715599566,0.550975469195755,0,0,0,14.7107395916628,10.5422071572388,9.24385025416969,0,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0,0,0,0.205601498999509,0.83593247695339,0,0.473447805734733,0,0.334231370655521,0,0,0.541607727530031,0.384273959177026,0.520237390239513,0.493313713811028,0,0.289803085735052,0,0,0,0.679856056185397,0,0,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0.144846518960824,1.5905718941022,0.486634870302636,0.472674085820339,0.886917589850256,0.702678285545008,0.261958150995425,10.9288586487763,5.56176664176644,0,0,0,0,0,0,2.18638648103376,1.72046919021225,2.77712401286075,0,2.09749718104953,3.02629846134074,2.92592953151535,0.516833518338658,0.35576626268671,0,4.43112248820062,1.52054421143703,0.976248230192678,1.10298924103761,2.43042584364528,0.357198913136319,0.22452937262617,0.450445921933289,1.53316637465883,4.74632829784064,1.28241220751285,0,0,6.10531672999548,0,1.13967460498122,2.25095607382472,2.29469296599051,1.41867352879343,1.12135520028461,1.06748995729705,1.72667283892012,0,0.538842688278752,0.653847612453835,0.302714855289863,0.576175924479999,1.17160715916898,1.87296046098192,1.1409436430889,0.747243402759005,0.939475989150119,0.485618833104395,0.280901613404497,0.204154171254893,0.491337269247072,0.826606249406124,1.18800285728205,0,0,2.15585442544872,0.673344455816265,0.500474079487857,0,0.438977620880838,0,0.300476117813194,0.567160915800105,0.89694817844431,0,0.423863802319124,0.900273288253207,0.103052529238439,0.257640540045629,0.37223371266318,1.85653965465393,0.0974370051611986,1.00973509697646,0.0920498986422993,0.161646056818812,1.06502877754984,0.10075209822764,0.508681776931463,7.53717327336858,4.36393792945335,6.59650569394709,0.243947412259191,0.795178609928912,0.929551542956147,0.414644220061482,0.504641701751257,1.09493207722749,4.69348596989448,0.643240938192885,4.14404764057442,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0.738155454624648,0,1.2347220339942,0,0,0,0,0,0.368965315629341,0.857839051492628,7.35326912237791,15.7362454560667,6.73544115157927,4.62942225792648,1.3032332212413,0,4.3299402607582,0.463721619900307,0.70445216541493,1.58803092537181,1.38895653772983,1.14152491340759,1.58040879591855,0.858486162094873,0,0,0,4.68669169933885,4.70349958956807,4.82035330624114,7.88114999785065,8.71901815541886,7.28427090413901,0,0,0,0,0,0,1.14596527667483,3.51652341630141,0,0.102827492703324,0,0.285826432630578,0.112131084345361,0.43596006883328,0.36669142910475,0.258543431515556,0,0,0.797814349754612,0,0.771622122786426,0,0.532844358032199,0.285955987316295,0.542621605391443,0,0.325736184293735,0,0,0,0.871533458600294,0.699810938274399,0,0,0,0.239624855491583,0,0,0.579125226670317,0.205476322550383,0.358121926479791,0,0,0,0.128343036279748,0,0,0,0,1.27587750330633,0,0,0.414415513436035,0.36807447515742,1.00034104211935,0.813795071099207,0.207970861530807,0.178428988797162,0,0,0.300946099727719,0,0,0.664225598535437,2.21243002250044,0.173767228936166,0.391602314925481,2.05886054286514,0,0.215714200818617,0,0.303127571446259,1.66435439510497,1.81434175997808,0,0.153461973288062,0,0.128139149255701,0.511707249066704,0.482561763430822,0,0.616838775210622,0.532685175939381,1.72467027628999,1.55776328755086,1.27831416305955,0.725156697549733,4.81215528727884,5.80110230296147,0,0.182091168006717,0.393373244878272,5.41439535488894,2.46449078734127,5.49044838423799,1.46139224653261,0.949964660035881,1.13733384070897,1.02056223165909,2.15915916102139,0,0.270946437543853,2.00675909541941,3.3133915495855,2.49322802678617,1.34324852833307,0,0,0.512900250232778,0.984043937099117,0.650756789328606,0,0,0,8.61398306994258,6.50060246036521,0,0.96670718292122,0.616194468458578,0.15350367472613,0.689182862422653,0.429680979473094,1.30515024522806,0.426133137080504,0.267096106940212,4.79326254546837,7.30322255987403,18.6314560242093,4.75441570021085,0,0,2.7881490806424,3.38836938193698,6.91997839412128,2.60979897622522,3.15051172476664,0.572499546967965,0.372158369359667,0,0.571890581771475,0.511795582622668,0.42793898803392,1.59101623962968,10.9892809627892,0.179872457583315,0.274537029736055,0.706874414074119,5.25674452090622,3.17020642346017,4.21258456238981,0.48763373908959,1.94970791705028,7.39551027297288,0.136499911407986,0.282810863907425,0,2.75682671773062,5.30751180192976,3.94605796728386,1.15755106853338,0.655894752046633,2.43492452355245,3.40805847909725,1.40847801266121,0.573645408816206,0.196498082026242,3.566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| ||
|short_description=p3@PLEKHG5 | |||
}} | }} |
Latest revision as of 22:41, 18 September 2015
Short description: | p3@PLEKHG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLEKHG5_5end |
Coexpression cluster: | C1451_immature_Sebocyte_squamous_Keratinocyte_Corneal_Small_Urothelial |
Association with transcript: | 0bp_to_ENST00000340850, ENST00000377725, NM_001042664, uc001anl.1, uc009vmb.1_5end |
EntrezGene: | PLEKHG5 |
HGNC: | 29105 |
UniProt: | O94827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.68e-22 | 253 |
embryonic cell | 1.36e-19 | 250 |
endo-epithelial cell | 2.31e-16 | 42 |
squamous epithelial cell | 2.00e-11 | 63 |
endodermal cell | 7.64e-11 | 58 |
respiratory epithelial cell | 8.03e-11 | 13 |
vascular associated smooth muscle cell | 2.18e-10 | 32 |
general ecto-epithelial cell | 1.96e-09 | 14 |
epithelial cell of alimentary canal | 2.53e-08 | 20 |
epithelial cell of nephron | 3.16e-07 | 15 |
acinar cell | 3.26e-07 | 5 |
blood vessel endothelial cell | 6.73e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.73e-07 | 18 |
endothelial cell of vascular tree | 8.36e-07 | 24 |
smooth muscle cell | 8.76e-07 | 43 |
smooth muscle myoblast | 8.76e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
artery | 1.91e-19 | 42 |
arterial blood vessel | 1.91e-19 | 42 |
arterial system | 1.91e-19 | 42 |
epithelial tube open at both ends | 1.19e-15 | 59 |
blood vessel | 1.19e-15 | 59 |
blood vasculature | 1.19e-15 | 59 |
vascular cord | 1.19e-15 | 59 |
systemic artery | 1.25e-15 | 33 |
systemic arterial system | 1.25e-15 | 33 |
vessel | 1.81e-15 | 68 |
splanchnic layer of lateral plate mesoderm | 2.76e-13 | 83 |
epithelial tube | 8.78e-13 | 117 |
vasculature | 1.62e-12 | 78 |
vascular system | 1.62e-12 | 78 |
anatomical conduit | 3.40e-10 | 240 |
epithelium | 1.39e-09 | 306 |
cell layer | 3.03e-09 | 309 |
cardiovascular system | 4.90e-08 | 109 |
circulatory system | 5.74e-08 | 112 |
aorta | 1.60e-07 | 21 |
aortic system | 1.60e-07 | 21 |
nephron epithelium | 3.16e-07 | 15 |
renal tubule | 3.16e-07 | 15 |
nephron tubule | 3.16e-07 | 15 |
nephron | 3.16e-07 | 15 |
uriniferous tubule | 3.16e-07 | 15 |
nephrogenic mesenchyme | 3.16e-07 | 15 |
surface structure | 6.43e-07 | 99 |
blood vessel endothelium | 6.73e-07 | 18 |
endothelium | 6.73e-07 | 18 |
cardiovascular system endothelium | 6.73e-07 | 18 |
multilaminar epithelium | 8.01e-07 | 83 |
urothelium | 8.47e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.75e-07 | 14 |