FFCP PHASE1:Hg19::chr4:41361634..41361643,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:41361634..41361643,+ to FFCP PHASE1:Hg19::chr4:41361634..41361643,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=10bp_to_ENST00000513024_5end | |||
|cluster_id=chr4:41361634..41361643,+ | |||
|description=CAGE_peak_19_at_LIMCH1_5end | |||
|id=chr4:41361634..41361643,+ | |||
|ontology_enrichment_celltype=CL:0002150!2.07e-13!3;CL:0000861!2.07e-13!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.28e-51;29!UBERON:0001041;2.07e-12;30!UBERON:0006595;1.38e-11;86!UBERON:0006298;1.55e-09;1!UBERON:0003124;3.98e-09;1 | |||
|ontology_enrichment_disease=DOID:305!4.14e-21!106;DOID:0050687!4.79e-18!143;DOID:162!9.28e-11!235;DOID:14566!2.22e-10!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.25e-16,106;DOID:0050687,2.17e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.53e-36!9;UBERON:0008947!1.93e-27!38;UBERON:0003258!1.93e-27!38;UBERON:0001557!4.82e-24!19;UBERON:0000065!2.53e-23!53;UBERON:0001004!4.63e-20!72;UBERON:0000072!7.21e-19!46;UBERON:0001041!3.42e-18!98;UBERON:0000077!9.66e-18!130;UBERON:0004921!7.59e-15!129;UBERON:0004185!7.59e-15!129;UBERON:0004119!4.58e-13!169;UBERON:0000925!4.58e-13!169;UBERON:0006595!4.58e-13!169;UBERON:0001007!1.86e-12!155;UBERON:0001555!1.86e-12!155;UBERON:0007026!1.86e-12!155;UBERON:0001048!5.53e-10!168;UBERON:0002394!1.29e-09!4;UBERON:0003928!1.29e-09!4;UBERON:0002294!2.71e-09!7;UBERON:0001173!2.71e-09!7;UBERON:0004912!2.71e-09!7;UBERON:0002048!2.53e-08!22;UBERON:0000117!2.53e-08!22;UBERON:0000171!2.53e-08!22;UBERON:0000170!2.53e-08!22;UBERON:0005597!2.53e-08!22;UBERON:0000118!2.53e-08!22;UBERON:0000063!4.48e-08!97;UBERON:0003104!2.07e-07!238;UBERON:0009142!2.07e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.11e-55;9!UBERON:0001557;1.11e-55;9!UBERON:0000065;7.34e-25;44!UBERON:0000072;2.92e-20;37!UBERON:0001004;3.99e-16;65!UBERON:0002048;1.17e-12;22!UBERON:0000117;1.17e-12;22!UBERON:0000171;1.17e-12;22!UBERON:0000170;1.17e-12;22!UBERON:0001736;1.55e-09;1!UBERON:0002171;1.55e-09;1!UBERON:0006518;1.55e-09;1!UBERON:0008949;1.55e-09;1!UBERON:0000101;1.55e-09;1!UBERON:0002167;1.55e-09;1!UBERON:0005178;8.64e-07;34!UBERON:0002224;8.64e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.25e-55,9;UBERON:0008947,1.14e-38,38;UBERON:0003258,1.14e-38,38;UBERON:0000065,1.71e-26,54;UBERON:0001557,7.23e-26,19;UBERON:0001004,7.74e-25,74;UBERON:0001041,1.18e-23,87;UBERON:0000072,1.24e-18,47;UBERON:0004921,1.78e-16,118;UBERON:0004119,6.18e-13,160;UBERON:0000925,6.18e-13,160;UBERON:0006595,6.18e-13,160;UBERON:0001007,7.35e-13,145;UBERON:0001555,7.35e-13,145;UBERON:0007026,7.35e-13,145;UBERON:0002048,1.08e-12,22;UBERON:0000117,1.08e-12,22;UBERON:0000171,1.08e-12,22;UBERON:0000170,1.08e-12,22;UBERON:0005597,1.08e-12,22;UBERON:0000118,1.08e-12,22;UBERON:0001048,5.78e-10,160;UBERON:0002171,1.03e-09,1;UBERON:0006518,1.03e-09,1;UBERON:0008949,1.03e-09,1;UBERON:0000101,1.03e-09,1;UBERON:0002167,1.03e-09,1;UBERON:0001736,1.32e-09,1;UBERON:0006298,1.32e-09,1;UBERON:0005178,4.83e-08,34;UBERON:0002224,4.83e-08,34;UBERON:0005181,8.48e-08,35;UBERON:0005153,2.38e-07,37;UBERON:0011216,3.63e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83936320095625,2.69735504124963,1.20505514941741,2.20587945464788,2.17879444092406,0.949082476444386,2.56179485504312,1.76599318612811,1.92373578473195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539210106883961,5.19161406559267,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,2.94133851501273,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0,0,2.41890828222713,2.63121541510268,1.97077096927702,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.262272940674991,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53978154095896,2.81926008926669,1.60181118851542,5.18774206828898,2.89967338743037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0.646948868380091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0.313972371402056,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,2.58136415292167,0,0,0,0.9164274741762,0,0,0.894843454382338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707029641304878,0,0,0,0,0,0,0,0,0,0,0,2.75237570042724,0,0,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0.342233301085281,0,0.215166616178029,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83936320095625,2.69735504124963,1.20505514941741,2.20587945464788,2.17879444092406,0.949082476444386,2.56179485504312,1.76599318612811,1.92373578473195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539210106883961,5.19161406559267,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,2.94133851501273,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0,0,2.41890828222713,2.63121541510268,1.97077096927702,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.262272940674991,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53978154095896,2.81926008926669,1.60181118851542,5.18774206828898,2.89967338743037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0.646948868380091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0.313972371402056,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,2.58136415292167,0,0,0,0.9164274741762,0,0,0.894843454382338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707029641304878,0,0,0,0,0,0,0,0,0,0,0,2.75237570042724,0,0,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0.342233301085281,0,0.215166616178029,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p19@LIMCH1 | |||
}} | }} |
Latest revision as of 19:34, 17 September 2015
Short description: | p19@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_LIMCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 10bp_to_ENST00000513024_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 1.25e-55 | 9 |
respiratory primordium | 1.14e-38 | 38 |
endoderm of foregut | 1.14e-38 | 38 |
respiratory tract | 1.71e-26 | 54 |
upper respiratory tract | 7.23e-26 | 19 |
respiratory system | 7.74e-25 | 74 |
foregut | 1.18e-23 | 87 |
segment of respiratory tract | 1.24e-18 | 47 |
subdivision of digestive tract | 1.78e-16 | 118 |
endoderm-derived structure | 6.18e-13 | 160 |
endoderm | 6.18e-13 | 160 |
presumptive endoderm | 6.18e-13 | 160 |
digestive system | 7.35e-13 | 145 |
digestive tract | 7.35e-13 | 145 |
primitive gut | 7.35e-13 | 145 |
lung | 1.08e-12 | 22 |
respiratory tube | 1.08e-12 | 22 |
respiration organ | 1.08e-12 | 22 |
pair of lungs | 1.08e-12 | 22 |
lung primordium | 1.08e-12 | 22 |
lung bud | 1.08e-12 | 22 |
primordium | 5.78e-10 | 160 |
lower lobe of right lung | 1.03e-09 | 1 |
right lung lobe | 1.03e-09 | 1 |
lower lobe of lung | 1.03e-09 | 1 |
lobe of lung | 1.03e-09 | 1 |
right lung | 1.03e-09 | 1 |
submandibular gland | 1.32e-09 | 1 |
submandibular gland primordium | 1.32e-09 | 1 |
thoracic cavity element | 4.83e-08 | 34 |
thoracic cavity | 4.83e-08 | 34 |
thoracic segment organ | 8.48e-08 | 35 |
epithelial bud | 2.38e-07 | 37 |
organ system subdivision | 3.63e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.25e-16 | 106 |
cell type cancer | 2.17e-11 | 143 |