FFCP PHASE1:Hg19::chr5:172755199..172755219,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:172755199..172755219,- to FFCP PHASE1:Hg19::chr5:172755199..172755219,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8614 | |EntrezGene=8614 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11374 | |HGNC=11374 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-143bp_to_ENST00000520648_5end | |||
|cluster_id=chr5:172755199..172755219,- | |||
|coexpression_cluster_id=C2818 | |||
|description=CAGE_peak_3_at_STC2_5end | |||
|id=chr5:172755199..172755219,- | |||
|ontology_enrichment_celltype=CL:0000055!7.20e-32!180;CL:0000057!2.89e-19!75;CL:0000548!1.93e-15!679;CL:0000004!1.93e-15!679;CL:0000255!1.93e-15!679;CL:0000012!8.37e-15!682;CL:0000359!1.32e-13!32;CL:0000680!1.92e-13!57;CL:0000056!1.92e-13!57;CL:0000355!1.92e-13!57;CL:0000192!3.41e-13!42;CL:0000514!3.41e-13!42;CL:0000222!1.52e-12!119;CL:0000144!1.98e-12!625;CL:0000187!1.09e-11!54;CL:0000183!7.92e-11!59;CL:0000393!1.46e-10!60;CL:0000211!1.46e-10!60;CL:0002321!2.32e-10!248;CL:0000220!3.71e-10!246;CL:0002371!1.38e-09!591;CL:0000003!4.70e-08!722;CL:0002620!2.45e-07!23;CL:0002334!6.61e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.35e-16;32!CL:0000192;4.86e-11;43!CL:0002334;1.83e-08;12!CL:0000134;6.69e-08;55!CL:0000057;7.86e-08;73!CL:0000048;4.28e-07;58!CL:0002320;5.88e-07;188!CL:0002539;9.85e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.10e-19,76;CL:0000359,1.26e-16,32;CL:0000192,1.69e-14,43;CL:0000514,1.69e-14,43;CL:0000048,9.56e-14,427;CL:0000723,5.36e-13,433;CL:0000680,9.01e-13,58;CL:0000056,9.01e-13,58;CL:0000355,9.01e-13,58;CL:0000034,2.14e-12,441;CL:0000222,2.32e-11,121;CL:0000187,1.43e-10,55;CL:0000393,3.32e-09,61;CL:0000211,3.32e-09,61;CL:0002334,1.76e-08,12;CL:0002539,4.51e-07,10;CL:0002620,8.32e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;4.86e-11;43!CL:0000355;9.06e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!8.81e-18!42;UBERON:0003509!8.81e-18!42;UBERON:0004572!8.81e-18!42;UBERON:0004872!1.50e-14!84;UBERON:0004573!1.66e-14!33;UBERON:0004571!1.66e-14!33;UBERON:0002049!4.08e-14!79;UBERON:0007798!4.08e-14!79;UBERON:0001981!5.89e-14!60;UBERON:0007500!5.89e-14!60;UBERON:0004537!5.89e-14!60;UBERON:0006965!5.89e-14!60;UBERON:0000914!7.20e-13!83;UBERON:0002329!7.20e-13!83;UBERON:0003077!7.20e-13!83;UBERON:0003059!7.20e-13!83;UBERON:0007282!7.20e-13!83;UBERON:0009618!7.20e-13!83;UBERON:0007285!7.20e-13!83;UBERON:0000055!8.10e-13!69;UBERON:0004290!9.46e-13!70;UBERON:0002100!1.01e-11!216;UBERON:0000486!1.04e-11!82;UBERON:0004535!1.06e-11!110;UBERON:0001134!1.36e-11!61;UBERON:0002036!1.36e-11!61;UBERON:0003082!1.36e-11!61;UBERON:0001009!4.70e-11!113;UBERON:0002385!4.82e-11!63;UBERON:0001015!4.82e-11!63;UBERON:0000383!4.82e-11!63;UBERON:0000490!4.94e-11!138;UBERON:0003914!3.87e-10!118;UBERON:0005256!5.19e-09!143;UBERON:0000947!3.93e-08!21;UBERON:0010191!3.93e-08!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.28e-16;42!UBERON:0003509;7.28e-16;42!UBERON:0004572;7.28e-16;42!UBERON:0004573;1.00e-13;33!UBERON:0004571;1.00e-13;33!UBERON:0000947;7.92e-08;21!UBERON:0010191;7.92e-08;21!UBERON:0007500;1.02e-07;56!UBERON:0001981;1.02e-07;56!UBERON:0004537;1.02e-07;56!UBERON:0003688;2.66e-07;6!UBERON:0002358;2.66e-07;6!UBERON:0003684;2.66e-07;6!UBERON:0001178;2.66e-07;6!UBERON:0002384;5.42e-07;198!UBERON:0004237;9.85e-07;10!UBERON:0004695;9.85e-07;10!UBERON:0002111;9.85e-07;10!UBERON:0004178;9.85e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.64e-21,42;UBERON:0003509,1.64e-21,42;UBERON:0004572,1.64e-21,42;UBERON:0004573,3.06e-16,33;UBERON:0004571,3.06e-16,33;UBERON:0004872,6.13e-14,83;UBERON:0007500,1.35e-13,59;UBERON:0001981,1.35e-13,59;UBERON:0004537,1.35e-13,59;UBERON:0006965,1.35e-13,59;UBERON:0002049,1.41e-12,78;UBERON:0007798,1.41e-12,78;UBERON:0000055,1.22e-11,68;UBERON:0002329,2.36e-11,71;UBERON:0003059,2.36e-11,71;UBERON:0007282,2.36e-11,71;UBERON:0004290,2.36e-11,71;UBERON:0009618,2.36e-11,71;UBERON:0001134,3.24e-11,62;UBERON:0002036,3.24e-11,62;UBERON:0003082,3.24e-11,62;UBERON:0003077,4.99e-11,72;UBERON:0007285,4.99e-11,72;UBERON:0007524,1.03e-10,73;UBERON:0002385,1.61e-10,64;UBERON:0001015,1.61e-10,64;UBERON:0000383,1.61e-10,64;UBERON:0000486,1.61e-10,83;UBERON:0004535,2.63e-10,109;UBERON:0007503,5.82e-10,78;UBERON:0001009,1.22e-09,112;UBERON:0000490,3.31e-09,148;UBERON:0003914,7.83e-09,117;UBERON:0005256,2.15e-08,122;UBERON:0000947,4.30e-08,21;UBERON:0010191,4.30e-08,21;UBERON:0002100,1.27e-07,199;UBERON:0003688,2.81e-07,6;UBERON:0002358,2.81e-07,6;UBERON:0003684,2.81e-07,6;UBERON:0001178,2.81e-07,6;UBERON:0004237,4.51e-07,10;UBERON:0004695,4.51e-07,10;UBERON:0002111,4.51e-07,10;UBERON:0004178,4.51e-07,10 | |||
|phase1_expression=5.63202975738726,10.4909256706582,6.3429481843187,12.0087958023756,9.38618298297304,12.2127393374052,15.1979926900986,0.631719873426831,0.261185628199839,0.982935746006035,0.697801167972428,0.655324116390517,1.05506791291381,0.123766352960047,0.662794751455832,4.70627602516243,1.80808358407193,6.57279081348636,1.95173119516203,0,1.02000345622126,0.313454721478088,0,0,0.502170558379211,0,0,0.0787107813136792,0,0,0.154816123316076,0,0.30120591877825,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,3.2529523714611,4.51204119572301,9.55987025141436,0.795285947051099,1.45990461090791,0.0945348171640679,0.443458794925128,0.702678285545008,0.196468613246569,0,1.11235332835329,0,0,0,0,0,0,0.39752481473341,0,2.08284300964557,0.56530794192401,1.67799774483962,3.57653454522088,2.29894463190492,0,0,0,0,0,0.732186172644509,0.735326160691737,4.86085168729056,0.0892997282840798,0,0.225222960966644,0,0.949265659568129,1.09921046358244,0,0,0,2.98183171017191,4.81195944325403,10.8575528266839,12.6208113129478,4.25602058638028,12.3349072031308,7.47242970107935,15.5400555502811,0,2.69421344139376,0.653847612453835,1.21085942115945,1.15235184896,1.40592859100278,0,1.1409436430889,0.448346041655403,0.704606991862589,0.485618833104395,0.280901613404497,0.204154171254893,0.368502951935304,0.723280468230358,3.56400857184616,4.69807165629258,0.910161361938026,1.43723628363248,0,0.500474079487857,0.831192346452549,0.877955241761676,14.4049264025539,4.5071417671979,3.62982986112067,4.48474089222155,2.98980344345994,2.33125091275518,6.90209520994125,1.23663035086127,4.63752972082133,2.60563598864226,2.86919764810153,5.94365731483312,2.52433774244115,2.02509777013059,1.45481451136931,3.90510551768276,2.41805035746337,1.69560592310488,0,0.272746120590835,0,0.243947412259191,1.06023814657188,0.464775771478074,0.310983165046111,0.504641701751257,0,9.38697193978896,3.21620469096443,1.38134921352481,2.3218396401599,5.77503585335668,0,0.168584690078102,0.241011029883482,0.441175890929576,0,0.237270619111097,0.134831308160164,0.196221465125346,0.38474715694639,0,4.20725321410337,0.4115740113314,0,0,0,0,0,0,1.3725424823882,0,0,0.100528972411631,0.0925884451585296,1.62904152655162,0,1.44331342025273,0,0.469634776943287,0.721832238805369,0.925971025153221,1.33177906564219,0.790204397959275,0.858486162094873,0,0,0,0,0.671928512795438,0.141775097242386,1.61205340865127,1.16253575405585,0,0,0,0,0,0,0,0,0,1.71072446022705,0.102827492703324,0,0,0.784917590417525,3.05172048183296,0.51336800074665,2.19761916788222,3.57656445851882,0.845302752556,1.32969058292435,2.08014873822732,0.514414748524284,1.41849132023278,2.39779961114489,1.00084595560703,0.542621605391443,0,0,1.06617584622764,0.791951872933429,1.50719688529793,2.61460037580088,1.19967589418468,0,0,0,28.2757329480068,14.9320516584348,1.42636905040718,21.4276333868017,9.8628634824184,15.2201818753911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.813795071099207,0.831883446123229,2.3195768543631,0.946214490203608,0.585707074963566,4.21324539618807,4.5481500811197,2.0694614258501,3.32112799267718,2.21243002250044,4.34418072340414,0.979005787313703,0.686286847621712,0,0,0,0,0,0,2.48107807818777,4.75732117192994,8.70046292742528,4.22859192543813,4.60536524160033,9.49038134747284,4.45254199334973,0.771048469013278,2.13074070375753,1.23190734020714,1.55776328755086,3.37010097533882,0.846016147141356,1.20303882181971,0.736647911487171,7.80738247519326,5.64482620820823,1.70461739447251,0.451199612907412,0.15403067420883,0,0,0,0,0.170093705276516,2.15915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,1.62689197332152,0,0.824125183365091,0.577566499444116,0,0.650060246036521,4.82051789532479,1.06337790121334,0.154048617114644,0.460511024178389,0.413509717453592,0.322260734604821,0,0.0852266274161009,0.890320356467374,3.30569830721956,4.03599141466723,0.382838137483752,1.92199783625545,2.32422774648643,46.9070396777654,1.3940745403212,2.7723022215848,7.98459045475533,0.869932992075073,5.00375391580584,20.4668588041047,1.116475108079,2.84741482246853,0,0.511795582622668,4.2793898803392,0.636406495851874,8.63443504219153,0.359744915166629,0.274537029736055,0.942499218765491,6.06547444719948,14.2659289055707,5.89761838734574,1.46290121726877,3.89941583410055,3.16950440270266,2.04749867111979,14.281948627325,0,1.65409603063837,13.2687795048244,12.2766247871054,0,0,16.6386509109417,6.196469961995,2.53526042279017,0.430234056612155,0.785992328104969,11.7701446988813,0.354761064070598,3.16661452946496,0.329294892959902,0,2.0996083214699,0.577332676353072,0,1.08890984861323,0,0.43050537267123,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.721346064882224,0,0,0,0,0.211673582723883,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0.140669416410513,0.333926115068718,0,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| ||
|short_description=p3@STC2 | |||
}} | }} |
Latest revision as of 01:52, 17 September 2015
Short description: | p3@STC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_STC2_5end |
Coexpression cluster: | C2818_Smooth_Multipotent_hepatic_Preadipocyte_mesothelioma_Fibroblast_mesenchymal |
Association with transcript: | -143bp_to_ENST00000520648_5end |
EntrezGene: | STC2 |
HGNC: | 11374 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.10e-19 | 76 |
vascular associated smooth muscle cell | 1.26e-16 | 32 |
smooth muscle cell | 1.69e-14 | 43 |
smooth muscle myoblast | 1.69e-14 | 43 |
multi fate stem cell | 9.56e-14 | 427 |
somatic stem cell | 5.36e-13 | 433 |
muscle precursor cell | 9.01e-13 | 58 |
myoblast | 9.01e-13 | 58 |
multi-potent skeletal muscle stem cell | 9.01e-13 | 58 |
stem cell | 2.14e-12 | 441 |
mesodermal cell | 2.32e-11 | 121 |
muscle cell | 1.43e-10 | 55 |
electrically responsive cell | 3.32e-09 | 61 |
electrically active cell | 3.32e-09 | 61 |
preadipocyte | 1.76e-08 | 12 |
aortic smooth muscle cell | 4.51e-07 | 10 |
skin fibroblast | 8.32e-07 | 23 |