FFCP PHASE1:Hg19::chr6:167525277..167525292,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:167525277..167525292,+ to FFCP PHASE1:Hg19::chr6:167525277..167525292,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1235 | |EntrezGene=1235 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1607 | |HGNC=1607 | ||
|TSSclassifier=strong | |||
|UniProt=P51684 | |UniProt=P51684 | ||
|association_with_transcript=-2bp_to_ENST00000400926,NM_004367,uc010kkm.2_5end | |||
|cluster_id=chr6:167525277..167525292,+ | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_3_at_CCR6_5end | |||
|id=chr6:167525277..167525292,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.24e-44!140;CL:0002087!6.55e-41!119;CL:0002031!4.58e-35!124;CL:0000838!2.44e-32!52;CL:0000542!1.90e-31!53;CL:0000051!1.90e-31!53;CL:0000988!7.07e-31!182;CL:0000037!1.08e-30!172;CL:0000566!1.08e-30!172;CL:0002032!1.91e-29!165;CL:0000837!1.91e-29!165;CL:0000791!5.20e-21!18;CL:0000789!5.20e-21!18;CL:0002420!5.20e-21!18;CL:0002419!5.20e-21!18;CL:0000790!5.20e-21!18;CL:0000084!1.02e-16!25;CL:0000827!1.02e-16!25;CL:0000625!9.83e-15!11;CL:0002057!1.38e-13!42;CL:0000945!2.30e-13!24;CL:0000826!2.30e-13!24;CL:0000236!1.01e-12!14;CL:0000860!3.84e-12!45;CL:0000766!7.63e-12!76;CL:0002009!2.77e-10!65;CL:0002194!5.43e-10!63;CL:0000576!5.43e-10!63;CL:0000040!5.43e-10!63;CL:0000559!5.43e-10!63;CL:0000624!1.60e-09!6;CL:0000080!8.32e-09!6;CL:0000557!1.09e-08!71;CL:0000839!3.60e-08!70;CL:0000763!5.90e-07!112;CL:0000049!5.90e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.07e-33;18!CL:0000789;3.07e-33;18!CL:0002419;3.07e-33;18!CL:0000084;2.92e-25;25!CL:0000542;2.93e-23;53!CL:0000625;8.93e-23;11!CL:0000236;2.76e-19;13!CL:0000624;2.36e-14;6!CL:0002087;8.10e-12;104!CL:0000945;8.39e-11;24!CL:0000094;7.89e-09;8!CL:0000081;1.38e-08;11!CL:0000898;7.27e-08;3!CL:0000738;9.62e-08;136!CL:0000226;1.20e-07;3!CL:0000842;1.20e-07;3!CL:0000623;1.67e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.37e-38,52;CL:0000542,1.16e-37,53;CL:0000051,1.16e-37,53;CL:0000738,8.56e-36,136;CL:0000791,3.08e-33,18;CL:0000789,3.08e-33,18;CL:0002420,3.08e-33,18;CL:0002419,3.08e-33,18;CL:0000790,3.08e-33,18;CL:0002087,1.64e-31,115;CL:0000988,1.43e-27,177;CL:0002031,2.61e-26,120;CL:0000037,5.60e-26,168;CL:0000084,3.02e-25,25;CL:0000827,3.02e-25,25;CL:0002032,8.08e-24,161;CL:0000837,8.08e-24,161;CL:0000625,9.25e-23,11;CL:0000236,1.08e-17,14;CL:0000624,2.28e-14,6;CL:0000945,8.86e-11,24;CL:0000826,8.86e-11,24;CL:0000094,8.19e-09,8;CL:0000081,1.42e-08,11;CL:0000898,7.04e-08,3;CL:0000226,1.20e-07,3;CL:0000842,1.20e-07,3;CL:0000623,1.56e-07,3;CL:0000825,1.56e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.07e-33;18!CL:0000051;2.93e-23;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.58e-19!102;UBERON:0003061!2.58e-19!102;UBERON:0000178!2.71e-19!15;UBERON:0000179!2.71e-19!15;UBERON:0000463!2.71e-19!15;UBERON:0002193!3.97e-18!112;UBERON:0007023!4.89e-08!115;UBERON:0002371!8.35e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.91e-30;15!UBERON:0000179;3.91e-30;15!UBERON:0000463;3.91e-30;15!UBERON:0002390;4.34e-15;32!UBERON:0002193;2.02e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-30,15;UBERON:0000179,4.01e-30,15;UBERON:0000463,4.01e-30,15;UBERON:0002390,1.59e-12,98;UBERON:0003061,1.59e-12,98;UBERON:0002193,1.68e-12,108 | |||
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| ||
|short_description=p3@CCR6 | |||
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Latest revision as of 21:05, 16 September 2015
Short description: | p3@CCR6 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCR6_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | -2bp_to_ENST00000400926, NM_004367, uc010kkm.2_5end |
EntrezGene: | CCR6 |
HGNC: | 1607 |
UniProt: | P51684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.37e-38 | 52 |
lymphocyte | 1.16e-37 | 53 |
common lymphoid progenitor | 1.16e-37 | 53 |
leukocyte | 8.56e-36 | 136 |
mature alpha-beta T cell | 3.08e-33 | 18 |
alpha-beta T cell | 3.08e-33 | 18 |
immature T cell | 3.08e-33 | 18 |
mature T cell | 3.08e-33 | 18 |
immature alpha-beta T cell | 3.08e-33 | 18 |
nongranular leukocyte | 1.64e-31 | 115 |
hematopoietic cell | 1.43e-27 | 177 |
hematopoietic lineage restricted progenitor cell | 2.61e-26 | 120 |
hematopoietic stem cell | 5.60e-26 | 168 |
T cell | 3.02e-25 | 25 |
pro-T cell | 3.02e-25 | 25 |
hematopoietic oligopotent progenitor cell | 8.08e-24 | 161 |
hematopoietic multipotent progenitor cell | 8.08e-24 | 161 |
CD8-positive, alpha-beta T cell | 9.25e-23 | 11 |
B cell | 1.08e-17 | 14 |
CD4-positive, alpha-beta T cell | 2.28e-14 | 6 |
lymphocyte of B lineage | 8.86e-11 | 24 |
pro-B cell | 8.86e-11 | 24 |
granulocyte | 8.19e-09 | 8 |
blood cell | 1.42e-08 | 11 |
naive T cell | 7.04e-08 | 3 |
single nucleate cell | 1.20e-07 | 3 |
mononuclear cell | 1.20e-07 | 3 |
natural killer cell | 1.56e-07 | 3 |
pro-NK cell | 1.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.01e-30 | 15 |
haemolymphatic fluid | 4.01e-30 | 15 |
organism substance | 4.01e-30 | 15 |
hematopoietic system | 1.59e-12 | 98 |
blood island | 1.59e-12 | 98 |
hemolymphoid system | 1.68e-12 | 108 |