FFCP PHASE1:Hg19::chrX:135614338..135614348,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:135614338..135614348,+ to FFCP PHASE1:Hg19::chrX:135614338..135614348,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51442 | |EntrezGene=51442 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20985 | |HGNC=20985 | ||
|TSSclassifier=strong | |||
|UniProt=Q99990,E9PHC2 | |UniProt=Q99990,E9PHC2 | ||
|association_with_transcript=27bp_to_ENST00000370634,ENST00000430688,NM_016267,uc004ezy.2_5end | |||
|cluster_id=chrX:135614338..135614348,+ | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_4_at_VGLL1_5end | |||
|id=chrX:135614338..135614348,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.78e-16!254;CL:0002076!7.63e-16!43;CL:0000223!3.68e-13!59;CL:0002541!2.11e-09!3;CL:0000349!3.61e-09!3;CL:0002577!3.61e-09!3;CL:0002159!3.79e-08!13;CL:0002251!3.89e-08!21;CL:0002621!4.84e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;4.72e-33;19!CL:0002541;8.19e-18;3!CL:0002577;2.24e-17;3!CL:0002536;1.26e-11;2!CL:0002537;1.97e-10;5!CL:0000039;4.42e-08;7!CL:0000586;4.42e-08;7!CL:0002681;4.48e-07;12!CL:0002584;4.48e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.19e-33,19;CL:0002541,7.75e-18,3;CL:0002577,2.36e-17,3;CL:0002536,1.40e-11,2;CL:0002537,2.04e-10,5;CL:0000039,4.42e-08,7;CL:0000586,4.42e-08,7;CL:0000066,4.10e-07,253;CL:0002681,4.44e-07,12;CL:0002584,4.44e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.72e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:299;2.19e-07;25!DOID:1799;3.13e-07;1!DOID:10165;3.13e-07;1!DOID:1798;3.13e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.26e-07,25;DOID:1799,3.13e-07,1;DOID:10165,3.13e-07,1;DOID:1798,3.13e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.57e-26!14;UBERON:0000158!1.57e-26!14;UBERON:0003124!1.81e-19!7;UBERON:0000478!3.70e-14!24;UBERON:0001987!8.83e-12!4;UBERON:0004340!8.83e-12!4;UBERON:0004119!4.01e-11!169;UBERON:0000925!4.01e-11!169;UBERON:0006595!4.01e-11!169;UBERON:0001008!5.74e-10!45;UBERON:0000305!1.15e-09!7;UBERON:0000476!2.11e-09!3;UBERON:0000920!2.11e-09!3;UBERON:0006554!6.88e-09!44;UBERON:0004175!9.56e-09!25;UBERON:0004871!2.14e-08!8;UBERON:0003975!2.26e-08!22;UBERON:0004923!3.00e-08!57;UBERON:0001949!4.84e-08!3;UBERON:0005156!4.42e-07!59;UBERON:0000990!4.42e-07!59;UBERON:0000995!4.44e-07!21;UBERON:0000077!5.55e-07!130;UBERON:0003064!6.02e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.08e-34;10!UBERON:0000158;4.08e-34;10!UBERON:0000478;7.59e-31;24!UBERON:0001987;8.34e-23;4!UBERON:0000305;3.58e-19;7!UBERON:0003124;8.19e-18;3!UBERON:0000920;8.19e-18;3!UBERON:0002294;2.28e-07;7!UBERON:0001173;2.28e-07;7!UBERON:0001225;4.48e-07;12!UBERON:0008987;4.48e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.56e-54,14;UBERON:0000158,1.56e-54,14;UBERON:0003124,7.85e-39,7;UBERON:0000478,8.23e-31,24;UBERON:0001987,8.83e-23,4;UBERON:0004340,8.83e-23,4;UBERON:0000305,4.01e-19,7;UBERON:0000920,7.75e-18,3;UBERON:0004871,1.03e-16,8;UBERON:0004923,2.46e-13,66;UBERON:0000995,3.07e-12,21;UBERON:0005795,1.22e-11,22;UBERON:0003975,1.22e-11,22;UBERON:0004175,3.93e-10,25;UBERON:0001225,4.44e-07,12;UBERON:0008987,4.44e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,2.79120467188971,4.36882744260345,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.439001141634502,2.24803506515239,0.201057944823262,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85004114314015,8.32177197552485,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0.184161977871793,0,0,0,1.80479845162965,1.00119938235739,0,0,0.105551628892876,0,0,0,0,0,0,1.52925763827023,0.831076008928724,0,0,0,0,0,0,4.6368455241475,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,4.89547764039252,0.86101074534246,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,5.01363417949149,3.8605408508243,3.68592842519078,0,0,0,0,0,0,0,0,0,0,0,4.58328590851367,0,0,0.789147245095469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1421425501194,31.8639637654691,20.9689427809476,9.57003479195758,5.22106282390615,8.52855641629816,0,0,0,0,0,0,0,0,0,5.22344986109273,2.68570835724488,0,0,0,0,0,0,0,0,0,0,0,2.73930466504926,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,5.0332324117188,0.293977192243133,4.70119715534174,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,2.93327074102205,0.64127056201227,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,3.39454300848285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.262272940674991,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.63852017853338,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917142992608395,0,0,0,0,0,0,0,26.1906694481422,0,1.03499260351932,0,0,0,0,0,0,0,0,2.93853583571069,0,0,0,0,12.6844389332574,0,0,0,0,0,0,0.39246546425257,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,8.01874039904175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,2.79120467188971,4.36882744260345,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96781501668982,0,0.439001141634502,2.24803506515239,0.201057944823262,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85004114314015,8.32177197552485,4.23346410661552,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0.184161977871793,0,0,0,1.80479845162965,1.00119938235739,0,0,0.105551628892876,0,0,0,0,0,0,1.52925763827023,0.831076008928724,0,0,0,0,0,0,4.6368455241475,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,4.89547764039252,0.86101074534246,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,5.01363417949149,3.8605408508243,3.68592842519078,0,0,0,0,0,0,0,0,0,0,0,4.58328590851367,0,0,0.789147245095469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1421425501194,31.8639637654691,20.9689427809476,9.57003479195758,5.22106282390615,8.52855641629816,0,0,0,0,0,0,0,0,0,5.22344986109273,2.68570835724488,0,0,0,0,0,0,0,0,0,0,0,2.73930466504926,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,5.0332324117188,0.293977192243133,4.70119715534174,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,2.93327074102205,0.64127056201227,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,3.39454300848285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.262272940674991,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.63852017853338,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917142992608395,0,0,0,0,0,0,0,26.1906694481422,0,1.03499260351932,0,0,0,0,0,0,0,0,2.93853583571069,0,0,0,0,12.6844389332574,0,0,0,0,0,0,0.39246546425257,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,8.01874039904175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p4@VGLL1 | |||
}} | }} |
Latest revision as of 14:47, 19 September 2015
Short description: | p4@VGLL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VGLL1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 27bp_to_ENST00000370634, ENST00000430688, NM_016267, uc004ezy.2_5end |
EntrezGene: | VGLL1 |
HGNC: | 20985 |
UniProt: | Q99990E9PHC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.19e-33 | 19 |
chorionic membrane mesenchymal stem cell | 7.75e-18 | 3 |
placental epithelial cell | 2.36e-17 | 3 |
amniotic epithelial cell | 1.40e-11 | 2 |
amnion mesenchymal stem cell | 2.04e-10 | 5 |
germ line cell | 4.42e-08 | 7 |
germ cell | 4.42e-08 | 7 |
epithelial cell | 4.10e-07 | 253 |
kidney cortical cell | 4.44e-07 | 12 |
renal cortical epithelial cell | 4.44e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.56e-54 | 14 |
membranous layer | 1.56e-54 | 14 |
chorion | 7.85e-39 | 7 |
extraembryonic structure | 8.23e-31 | 24 |
placenta | 8.83e-23 | 4 |
allantois | 8.83e-23 | 4 |
amnion | 4.01e-19 | 7 |
egg chorion | 7.75e-18 | 3 |
somatic layer of lateral plate mesoderm | 1.03e-16 | 8 |
organ component layer | 2.46e-13 | 66 |
uterus | 3.07e-12 | 21 |
embryonic uterus | 1.22e-11 | 22 |
internal female genitalia | 1.22e-11 | 22 |
internal genitalia | 3.93e-10 | 25 |
cortex of kidney | 4.44e-07 | 12 |
renal parenchyma | 4.44e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.26e-07 | 25 |
islet cell tumor | 3.13e-07 | 1 |
endocrine pancreas cancer | 3.13e-07 | 1 |
pancreatic endocrine carcinoma | 3.13e-07 | 1 |