FFCP PHASE1:Mm9::chr11:77029682..77029781,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:77029682..77029781,+ to FFCP PHASE1:Mm9::chr11:77029682..77029781,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=237860 | |EntrezGene=237860 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=788 | |||
|TSSclassifier=NA | |||
|UniProt=Q5SW75 | |UniProt=Q5SW75 | ||
|association_with_transcript=-7bp_to_ENSMUST00000037912,ENSMUST00000156488_5end | |||
|cluster_id=chr11:77029682..77029781,+ | |||
|description=CAGE_peak_1_at_Ssh2_5end | |||
|id=chr11:77029682..77029781,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.98e-12!33;CL:0000047!1.98e-12!33;CL:0000031!1.98e-12!33;CL:0000404!1.98e-12!33;CL:0000117!5.40e-11!23;CL:0000337!5.40e-11!23;CL:0000393!5.54e-08!39;CL:0000211!5.54e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.98e-12,33;CL:0000047,1.98e-12,33;CL:0000031,1.98e-12,33;CL:0000404,1.98e-12,33;CL:0000117,5.40e-11,23;CL:0000337,5.40e-11,23;CL:0000393,5.54e-08,39;CL:0000211,5.54e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.24e-13!73;UBERON:0005743!4.24e-13!73;UBERON:0002020!1.86e-12!34;UBERON:0000073!2.89e-12!75;UBERON:0001016!2.89e-12!75;UBERON:0001049!9.19e-11!52;UBERON:0005068!9.19e-11!52;UBERON:0006241!9.19e-11!52;UBERON:0007135!9.19e-11!52;UBERON:0002791!1.28e-10!29;UBERON:0003528!1.28e-10!29;UBERON:0001893!1.28e-10!29;UBERON:0000955!2.04e-10!50;UBERON:0006238!2.04e-10!50;UBERON:0007811!2.79e-10!86;UBERON:0002616!5.22e-10!49;UBERON:0000153!5.64e-10!94;UBERON:0000033!8.11e-09!63;UBERON:0003056!9.69e-09!49;UBERON:0000064!1.08e-08!99;UBERON:0003080!1.45e-08!40;UBERON:0002346!2.60e-08!71;UBERON:0003075!2.60e-08!71;UBERON:0007284!2.60e-08!71;UBERON:0002780!2.89e-08!39;UBERON:0001890!2.89e-08!39;UBERON:0006240!2.89e-08!39;UBERON:0000956!4.19e-08!21;UBERON:0001869!4.19e-08!21;UBERON:0000203!4.19e-08!21;UBERON:0004121!9.20e-08!102;UBERON:0000924!9.20e-08!102;UBERON:0006601!9.20e-08!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.24e-13,73;UBERON:0002020,1.86e-12,34;UBERON:0001016,2.89e-12,75;UBERON:0002346,7.17e-12,64;UBERON:0003075,7.17e-12,64;UBERON:0007284,7.17e-12,64;UBERON:0000073,8.62e-12,54;UBERON:0001049,9.19e-11,52;UBERON:0005068,9.19e-11,52;UBERON:0006241,9.19e-11,52;UBERON:0007135,9.19e-11,52;UBERON:0003528,1.28e-10,29;UBERON:0002791,1.28e-10,29;UBERON:0001893,1.28e-10,29;UBERON:0004121,1.77e-10,95;UBERON:0000924,1.77e-10,95;UBERON:0006601,1.77e-10,95;UBERON:0010371,5.92e-10,73;UBERON:0000955,3.30e-09,47;UBERON:0006238,3.30e-09,47;UBERON:0002616,8.18e-09,46;UBERON:0003056,9.69e-09,49;UBERON:0003080,1.45e-08,40;UBERON:0002780,2.89e-08,39;UBERON:0001890,2.89e-08,39;UBERON:0006240,2.89e-08,39;UBERON:0000956,4.19e-08,21;UBERON:0001869,4.19e-08,21;UBERON:0000203,4.19e-08,21 | |||
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| ||
|short_description=p1@Ssh2 | |||
}} | }} |
Latest revision as of 17:13, 25 September 2015
Short description: | p1@Ssh2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ssh2_5end |
Coexpression cluster: | MCL_coexpression_mm9:788 |
Association with transcript: | -7bp_to_ENSMUST00000037912, ENSMUST00000156488_5end |
EntrezGene: | Ssh2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.98e-12 | 33 |
neuronal stem cell | 1.98e-12 | 33 |
neuroblast | 1.98e-12 | 33 |
electrically signaling cell | 1.98e-12 | 33 |
CNS neuron (sensu Vertebrata) | 5.40e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.40e-11 | 23 |
electrically responsive cell | 5.54e-08 | 39 |
electrically active cell | 5.54e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.24e-13 | 73 |
gray matter | 1.86e-12 | 34 |
nervous system | 2.89e-12 | 75 |
neurectoderm | 7.17e-12 | 64 |
neural plate | 7.17e-12 | 64 |
presumptive neural plate | 7.17e-12 | 64 |
regional part of nervous system | 8.62e-12 | 54 |
neural tube | 9.19e-11 | 52 |
neural rod | 9.19e-11 | 52 |
future spinal cord | 9.19e-11 | 52 |
neural keel | 9.19e-11 | 52 |
brain grey matter | 1.28e-10 | 29 |
regional part of telencephalon | 1.28e-10 | 29 |
telencephalon | 1.28e-10 | 29 |
ectoderm-derived structure | 1.77e-10 | 95 |
ectoderm | 1.77e-10 | 95 |
presumptive ectoderm | 1.77e-10 | 95 |
ecto-epithelium | 5.92e-10 | 73 |
brain | 3.30e-09 | 47 |
future brain | 3.30e-09 | 47 |
regional part of brain | 8.18e-09 | 46 |
pre-chordal neural plate | 9.69e-09 | 49 |
anterior neural tube | 1.45e-08 | 40 |
regional part of forebrain | 2.89e-08 | 39 |
forebrain | 2.89e-08 | 39 |
future forebrain | 2.89e-08 | 39 |
cerebral cortex | 4.19e-08 | 21 |
cerebral hemisphere | 4.19e-08 | 21 |
pallium | 4.19e-08 | 21 |