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FFCP PHASE1:Mm9::chr12:54349410..54349461,+: Difference between revisions

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{{FFCP
{{FFCP
|id=chr12:54349410..54349461,+
|DHSsupport=NA
|short_description=p1@Npas3
|DPIdataset=NA
|description=CAGE_peak_1_at_Npas3_5end
|association_with_transcript=-202bp_to_ENSMUST00000021396,ENSMUST00000101432,NM_013780,uc007nno.1,uc007nnp.1_5end
|EntrezGene=27386
|EntrezGene=27386
|HGNC=
|HGNC=
|MCL_coexpression_id=13
|TSSclassifier=NA
|UniProt=Q0IJ77,F8VQB2,Q9QZQ0
|UniProt=Q0IJ77,F8VQB2,Q9QZQ0
|association_with_transcript=-202bp_to_ENSMUST00000021396,ENSMUST00000101432,NM_013780,uc007nno.1,uc007nnp.1_5end
|cluster_id=chr12:54349410..54349461,+
|description=CAGE_peak_1_at_Npas3_5end
|id=chr12:54349410..54349461,+
|ontology_enrichment_celltype=CL:0000221!3.63e-19!44;CL:0000133!3.63e-19!44;CL:0002319!1.04e-18!43;CL:0000117!2.02e-16!23;CL:0000337!2.02e-16!23;CL:0000540!8.06e-16!33;CL:0000047!8.06e-16!33;CL:0000031!8.06e-16!33;CL:0000404!8.06e-16!33;CL:0000055!1.44e-15!50;CL:0000393!2.63e-13!39;CL:0000211!2.63e-13!39;CL:0002321!9.79e-07!70;CL:0000220!9.79e-07!70
|ontology_enrichment_celltype_v019_2=CL:0000117,5.44e-20,23;CL:0000337,5.44e-20,23;CL:0000221,5.14e-18,44;CL:0000133,5.14e-18,44;CL:0002319,1.79e-17,43;CL:0000540,2.73e-14,33;CL:0000047,2.73e-14,33;CL:0000031,2.73e-14,33;CL:0000404,2.73e-14,33;CL:0000393,6.49e-12,39;CL:0000211,6.49e-12,39;CL:0002321,2.47e-07,70
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001017!6.49e-33!73;UBERON:0005743!6.49e-33!73;UBERON:0000073!4.04e-32!75;UBERON:0001016!4.04e-32!75;UBERON:0001049!2.68e-24!52;UBERON:0005068!2.68e-24!52;UBERON:0006241!2.68e-24!52;UBERON:0007135!2.68e-24!52;UBERON:0004121!2.73e-24!102;UBERON:0000924!2.73e-24!102;UBERON:0006601!2.73e-24!102;UBERON:0000955!3.93e-22!50;UBERON:0006238!3.93e-22!50;UBERON:0002616!1.10e-21!49;UBERON:0000033!1.30e-21!63;UBERON:0002346!4.26e-21!71;UBERON:0003075!4.26e-21!71;UBERON:0007284!4.26e-21!71;UBERON:0002020!5.39e-21!34;UBERON:0003056!6.51e-18!49;UBERON:0003080!1.40e-17!40;UBERON:0002791!3.82e-17!29;UBERON:0003528!3.82e-17!29;UBERON:0001893!3.82e-17!29;UBERON:0002780!6.31e-17!39;UBERON:0001890!6.31e-17!39;UBERON:0006240!6.31e-17!39;UBERON:0000956!3.48e-12!21;UBERON:0001869!3.48e-12!21;UBERON:0000203!3.48e-12!21;UBERON:0000153!1.70e-10!94;UBERON:0002619!3.73e-10!17;UBERON:0007811!1.46e-09!86;UBERON:0003076!2.45e-07!12;UBERON:0003057!2.45e-07!12
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.78e-34,73;UBERON:0001016,7.45e-33,75;UBERON:0000073,7.74e-31,54;UBERON:0002346,1.84e-29,64;UBERON:0003075,1.84e-29,64;UBERON:0007284,1.84e-29,64;UBERON:0001049,3.38e-29,52;UBERON:0005068,3.38e-29,52;UBERON:0006241,3.38e-29,52;UBERON:0007135,3.38e-29,52;UBERON:0004121,2.42e-28,95;UBERON:0000924,2.42e-28,95;UBERON:0006601,2.42e-28,95;UBERON:0002020,1.13e-25,34;UBERON:0010371,3.00e-25,73;UBERON:0000955,4.37e-24,47;UBERON:0006238,4.37e-24,47;UBERON:0002616,1.53e-23,46;UBERON:0003056,2.44e-21,49;UBERON:0003528,6.85e-21,29;UBERON:0002791,6.85e-21,29;UBERON:0001893,6.85e-21,29;UBERON:0003080,1.26e-20,40;UBERON:0002780,8.08e-20,39;UBERON:0001890,8.08e-20,39;UBERON:0006240,8.08e-20,39;UBERON:0010314,5.43e-18,92;UBERON:0000956,9.81e-15,21;UBERON:0001869,9.81e-15,21;UBERON:0000203,9.81e-15,21;UBERON:0002619,3.22e-12,17;UBERON:0003076,5.13e-09,12;UBERON:0003057,5.13e-09,12;UBERON:0002420,2.47e-07,8;UBERON:0007245,2.47e-07,8;UBERON:0010009,2.47e-07,8;UBERON:0010011,2.47e-07,8;UBERON:0000454,2.47e-07,8;UBERON:0002021,5.74e-07,10;UBERON:0000411,5.74e-07,10;UBERON:0001950,5.74e-07,10;UBERON:0002240,8.71e-07,6;UBERON:0005174,8.71e-07,6;UBERON:0001137,8.71e-07,6;UBERON:0001954,9.16e-07,7;UBERON:0003022,9.16e-07,7;UBERON:0002421,9.16e-07,7;UBERON:0000349,9.16e-07,7;UBERON:0002600,9.16e-07,7
|phase1_expression=3.84357233051505,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,2.55129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.3200753336323,21.3095597252438,32.8586529435539,11.6188729949051,23.0004102983955,0,0,0,1.28629718017973,0.85960031981627,3.09403255366465,52.3999633626358,50.2541430308431,50.7065122804943,3.04960078862219,2.66788438833342,0,0,0,20.0732074047331,34.5796474789399,17.5235444801327,11.2054928815303,10.7265730289205,37.4202789568983,28.0503047008549,28.5403562170843,22.1403038052126,17.4651569455904,20.9220173898839,16.0886045987337,19.3544231902867,38.9064548804072,26.805879575506,27.6084086395083,13.959149950069,14.6318278608237,17.72459674211,56.2740598254705,44.9894511325165,28.3327157654457,0.075726193333184,0.151143120213571,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,9.01397886570755,0,0,0,0,0,0,0,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0,0,0,0,0.722996784599558,0,3.558870698843,0.220841518460394,0.969750506270444,0,11.7112318804619,11.51956887474,0,0,0,0,20.8208988772704,17.3850229071078,10.8062742817063,12.8629996942285,12.5300574091862,13.2984348518118,13.9527486238272,0.305518091550949,0.248813941220186,0,0,2.08192708740326,1.83921683546778,2.34080768746954,2.10986744970001,2.31324097114515,3.97152532883034,3.5606655332697,2.32833033665114,1.5089759505299,4.9167580843633,4.57472922826267,2.19195732427575,3.33656699070717,1.74126083261083,1.23469281844766,0.796137067273973,0,0,0,0.414251545071004,1.17263029990548,0.36012412292203,1.65721314909647,0.196764231747404,0.308534225774757,0.465067889500816,0,0.233530684734339,0.493679549740441,0.164167464079095,0.0810688095458557,0,0,0,10.3042074796422,18.7286394530298,0,0,3.19932375802851,1.85789337488351,0.77320476793256,0.403367049246685,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0,0,0.898819408654221,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,1.33476084572875,0.786235980452812,0.224862112384854,0,0.482354319504834,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.568474235311454,0.325929952884052,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7110261084252,14.2998257642488,0,0,0.94652465824877,3.12350995437311,1.07711698866399,0.955875191810208,0.891194696329576,1.98153571552183,0.809621403349789,0.876767573733936,0.790575555893047,8.67567554338879,0.283880170416537,1.95872164033981,2.11753047159649,0.659880491890142,0,0.242780636154981,0,0,0.590603785761546,0.922305443831782,0.258428293168221,0.363533729477506,0.356497378384721,1.26414703174326,0,0,0,3.6012218806262,1.29358683782755,3.42939256050548,2.48276327099183,0.178368817602071,1.15184314421485,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0.807322133479528,0.180938774784468,0,0,0,21.3239097312086,0,0.412773735926445,0,0.188368457004691,0,0,0,0,0,0,1.26534397432454,0.813277868507395,0.540026704109006,0.418176592028937,0.655087691238533,0,0.330613822901344,0,0,0,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0,0,0,0,0.288030006257865,0,0,0.410843828659309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0.501572104035363,10.1655331671072,15.651058041244,11.4579102687879,10.6548973053086,10.9613203163303,11.3309084608455,16.2005400055633,9.45674526770863,6.34399372577886,10.8729665467882,9.85979802049678,21.5473431636557,11.439151585527,7.05009479498053,7.1268475293514,6.25067928730048,5.55616819504038,5.76898160268904,5.45562656306086,8.84440241173291,7.60437899670719,8.86543804514558,6.367622507952,6.91471645972588,6.43277252302869,8.09699275181225,6.37363792696705,6.75182271622968,4.94503080963968,7.65434384698866,4.11443102862498,6.21165321557681,5.7224685587357,8.43009216467505,6.86998477031913,8.79991922073436,5.85369513192872,6.31367307450823,6.11118512306378,7.85599180320834,7.59264115994714,6.50129583678719,5.32000356120596,7.2820315357404,7.71626443924566,10.7418548513317,6.31615342802603,4.08255002691767,3.25190164517034,1.54413993383661,1.15933917810211
|phase1_expression=3.84357233051505,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,2.55129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.3200753336323,21.3095597252438,32.8586529435539,11.6188729949051,23.0004102983955,0,0,0,1.28629718017973,0.85960031981627,3.09403255366465,52.3999633626358,50.2541430308431,50.7065122804943,3.04960078862219,2.66788438833342,0,0,0,20.0732074047331,34.5796474789399,17.5235444801327,11.2054928815303,10.7265730289205,37.4202789568983,28.0503047008549,28.5403562170843,22.1403038052126,17.4651569455904,20.9220173898839,16.0886045987337,19.3544231902867,38.9064548804072,26.805879575506,27.6084086395083,13.959149950069,14.6318278608237,17.72459674211,56.2740598254705,44.9894511325165,28.3327157654457,0.075726193333184,0.151143120213571,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,9.01397886570755,0,0,0,0,0,0,0,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0,0,0,0,0.722996784599558,0,3.558870698843,0.220841518460394,0.969750506270444,0,11.7112318804619,11.51956887474,0,0,0,0,20.8208988772704,17.3850229071078,10.8062742817063,12.8629996942285,12.5300574091862,13.2984348518118,13.9527486238272,0.305518091550949,0.248813941220186,0,0,2.08192708740326,1.83921683546778,2.34080768746954,2.10986744970001,2.31324097114515,3.97152532883034,3.5606655332697,2.32833033665114,1.5089759505299,4.9167580843633,4.57472922826267,2.19195732427575,3.33656699070717,1.74126083261083,1.23469281844766,0.796137067273973,0,0,0,0.414251545071004,1.17263029990548,0.36012412292203,1.65721314909647,0.196764231747404,0.308534225774757,0.465067889500816,0,0.233530684734339,0.493679549740441,0.164167464079095,0.0810688095458557,0,0,0,10.3042074796422,18.7286394530298,0,0,3.19932375802851,1.85789337488351,0.77320476793256,0.403367049246685,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0,0,0.898819408654221,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,1.33476084572875,0.786235980452812,0.224862112384854,0,0.482354319504834,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.568474235311454,0.325929952884052,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7110261084252,14.2998257642488,0,0,0.94652465824877,3.12350995437311,1.07711698866399,0.955875191810208,0.891194696329576,1.98153571552183,0.809621403349789,0.876767573733936,0.790575555893047,8.67567554338879,0.283880170416537,1.95872164033981,2.11753047159649,0.659880491890142,0,0.242780636154981,0,0,0.590603785761546,0.922305443831782,0.258428293168221,0.363533729477506,0.356497378384721,1.26414703174326,0,0,0,3.6012218806262,1.29358683782755,3.42939256050548,2.48276327099183,0.178368817602071,1.15184314421485,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0.807322133479528,0.180938774784468,0,0,0,21.3239097312086,0,0.412773735926445,0,0.188368457004691,0,0,0,0,0,0,1.26534397432454,0.813277868507395,0.540026704109006,0.418176592028937,0.655087691238533,0,0.330613822901344,0,0,0,0,0,0,0.194451188344048,0.129159823477731,0.168956125490778,0,0,0,0,0.288030006257865,0,0,0.410843828659309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0.501572104035363,10.1655331671072,15.651058041244,11.4579102687879,10.6548973053086,10.9613203163303,11.3309084608455,16.2005400055633,9.45674526770863,6.34399372577886,10.8729665467882,9.85979802049678,21.5473431636557,11.439151585527,7.05009479498053,7.1268475293514,6.25067928730048,5.55616819504038,5.76898160268904,5.45562656306086,8.84440241173291,7.60437899670719,8.86543804514558,6.367622507952,6.91471645972588,6.43277252302869,8.09699275181225,6.37363792696705,6.75182271622968,4.94503080963968,7.65434384698866,4.11443102862498,6.21165321557681,5.7224685587357,8.43009216467505,6.86998477031913,8.79991922073436,5.85369513192872,6.31367307450823,6.11118512306378,7.85599180320834,7.59264115994714,6.50129583678719,5.32000356120596,7.2820315357404,7.71626443924566,10.7418548513317,6.31615342802603,4.08255002691767,3.25190164517034,1.54413993383661,1.15933917810211
|short_description=p1@Npas3
}}
}}

Latest revision as of 16:07, 26 September 2015

Short description:p1@Npas3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Npas3_5end
Coexpression cluster:MCL_coexpression_mm9:13
Association with transcript: -202bp_to_ENSMUST00000021396, ENSMUST00000101432, NM_013780, uc007nno.1, uc007nnp.1_5end
EntrezGene:Npas3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Npas3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G73.84
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.23
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A32.55
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C235.32
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B821.31
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C332.86
Mouse Astrocytes, donor2.CNhs12078.11552-120C411.62
Mouse Astrocytes, donor3.CNhs12107.11633-122C423.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C11.29
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.86
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C53.09
Mouse Granule cells, donor1.CNhs12131.11713-123C352.40
Mouse Granule cells, donor2.CNhs12357.11731-123E350.25
Mouse Granule cells, donor3.CNhs12108.11636-122C750.71
Mouse Meningeal cells, donor1.CNhs12132.11716-123C63.05
Mouse Meningeal cells, donor3.CNhs12109.11639-122D12.67
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C820.07
Mouse Microglia, donor2.CNhs12634.11736-123E834.58
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D517.52
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F511.21
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D910.73
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F137.42
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D528.05
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D228.54
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F222.14
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D617.47
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D320.92
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F316.09
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D719.35
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D438.91
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F426.81
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D827.61
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E413.96
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E514.63
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I617.72
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D656.27
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F644.99
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E128.33
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.56
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G69.01
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.00
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.00
adrenal gland, embryo E14.CNhs11038.406-44C50.17
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.23
adrenal gland, embryo E18.CNhs11026.1262-18F50.00
adrenal gland, neonate N00.CNhs11191.1311-23C10.00
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.72
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F53.56
bone (os femoris), neonate N16.CNhs11225.1525-43A60.22
bone (os femoris), neonate N20.CNhs11195.1350-25C30.97
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B211.71
cerebellum, neonate N30.CNhs11135.1395-42I211.52
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A420.82
corpus striatum, adult.CNhs10487.19-21D817.39
corpus striatum, neonate N00.CNhs11226.630-43F110.81
cortex, adult.CNhs10473.12-14D512.86
cortex, neonate N30.CNhs11107.1392-42F212.53
diencephalon, adult.CNhs10482.20-12F213.30
diencephalon, neonate N30.CNhs11201.1388-42B213.95
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.31
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.25
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C62.08
eyeball, embryo E14.CNhs10521.399-16E21.84
eyeball, embryo E15.CNhs10593.426-16C92.34
eyeball, embryo E17.CNhs11023.1261-18D42.11
eyeball, neonate N00.CNhs11207.633-15C62.31
eyeball, neonate N01.CNhs11140.1532-43E73.97
eyeball, neonate N02.CNhs11205.1551-44G83.56
eyeball, neonate N16.CNhs11188.777-19A22.33
forelimb, embryo E11.CNhs10596.335-25E21.51
forelimb, embryo E12.CNhs10600.359-14H24.92
forelimb, embryo E13.CNhs10589.384-1E24.57
forelimb, embryo E14.CNhs10577.413-26A82.19
forelimb, embryo E15.CNhs11007.437-20E73.34
forelimb, embryo E17.CNhs10598.1517-43C41.74
forelimb, embryo E18.CNhs11008.1520-43B51.23
gonad, embryo E13.CNhs11044.1564-45I60.80
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F51.17
heart, embryo E13.CNhs11013.376-3I90.36
heart, embryo E14.CNhs10597.403-26D41.66
heart, embryo E15.CNhs11017.431-16C80.20
heart, embryo E16.CNhs11021.457-17C60.31
heart, embryo E17.CNhs11025.479-18E50.47
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.23
heart, neonate N03.CNhs11221.1349-25I20.49
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.08
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E810.30
hippocampus, neonate N00.CNhs11228.627-43G118.73
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I53.20
intestine, embryo E13.CNhs11010.381-16D51.86
intestine, embryo E15.CNhs10602.976-16D80.77
intestine, embryo E16.CNhs10585.463-22H40.40
intestine, embryo E17.CNhs10582.482-18D30.22
intestine, embryo E18.CNhs10526.1289-20F70.19
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.25
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.19
kidney, embryo E15.CNhs10997.434-16F80.00
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.00
kidney, neonate N10.CNhs11206.758-6D50.00
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F81.33
liver, embryo E13.CNhs10524.378-3H60.79
liver, embryo E14.CNhs10594.409-16E10.22
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.48
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.57
lung, embryo E14.CNhs10604.404-26F80.33
lung, embryo E15.CNhs11020.432-17C50.17
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C220.71
medulla oblongata, neonate N30.CNhs11200.1396-42A314.30
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.95
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E23.12
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E31.08
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.96
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.89
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D91.98
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.81
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.88
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I98.68
ovary, adult.CNhs10507.91-2I70.28
ovary, embryo E18.CNhs11040.505-44H71.96
ovary, neonate N00.CNhs11217.1299-22I42.12
oviduct, adult pregnant day01.CNhs10500.988-6G60.66
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.24
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.59
pancreas, embryo E18.CNhs10580.1535-43I70.92
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.36
pancreas, neonate N02.CNhs11139.1539-43D80.36
pancreas, neonate N16.CNhs11136.787-43B61.26
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E63.60
pituitary gland, embryo E13.CNhs11009.370-44C71.29
pituitary gland, embryo E14.CNhs11037.398-44A53.43
pituitary gland, embryo E15.CNhs10592.427-16B92.48
pituitary gland, embryo E16.CNhs11036.449-43F60.18
pituitary gland, embryo E17.CNhs11039.1265-44F51.15
pituitary gland, neonate N00.CNhs11190.1308-22E90.30
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.16
skin, neonate N00.CNhs11124.650-25G40.81
skin, neonate N03.CNhs11215.662-22H30.18
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C921.32
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.41
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.19
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E31.27
stomach, embryo E15.CNhs10603.1252-16G80.81
stomach, embryo E16.CNhs11022.459-17D40.54
stomach, embryo E17.CNhs11006.1035-18D50.42
stomach, embryo E18.CNhs10999.1286-20C60.66
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.33
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.19
testis, embryo E17.CNhs11029.486-18I50.13
testis, embryo E18.CNhs11027.503-18G50.17
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.00
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.29
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.00
thymus, embryo E15.CNhs11005.430-45I20.41
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A110.17
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A215.65
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A311.46
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D710.65
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A410.96
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A511.33
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A616.20
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A79.46
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A86.34
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A910.87
whole body, embryo E11.CNhs11014.324-5I89.86
whole body, embryo E12.CNhs10587.857-27C921.55
whole body, embryo E13.CNhs10512.372-23H211.44
whole body, embryo E14.5.CNhs10578.420-27D27.05
whole body, embryo E14.CNhs10519.395-14B17.13
whole body, embryo E16.CNhs10514.453-14F26.25
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G55.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G55.77
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G55.46
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G58.84
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G57.60
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G58.87
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G56.37
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G56.91
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G56.43
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G58.10
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G56.37
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G56.75
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G54.95
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G57.65
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G54.11
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G56.21
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G55.72
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G58.43
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G56.87
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G58.80
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G55.85
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G56.31
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G56.11
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G57.86
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G57.59
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G56.50
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G55.32
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G57.28
whole body, embryo E17.5.CNhs10513.490-9F97.72
whole body, embryo E17.CNhs10517.475-3I510.74
whole body, embryo E18.CNhs10516.493-3B36.32
whole body, neonate N00.CNhs10525.657-19C24.08
whole body, neonate N01.CNhs10576.659-23C63.25
whole body, neonate N06.CNhs10515.692-21D11.54
whole body, neonate N10.CNhs10518.761-6B41.16





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)5.44e-2023
neuroblast (sensu Vertebrata)5.44e-2023
ectodermal cell5.14e-1844
neurectodermal cell5.14e-1844
neural cell1.79e-1743
neuron2.73e-1433
neuronal stem cell2.73e-1433
neuroblast2.73e-1433
electrically signaling cell2.73e-1433
electrically responsive cell6.49e-1239
electrically active cell6.49e-1239
embryonic cell2.47e-0770

Uber anatomy
Ontology termp-valuen
central nervous system1.78e-3473
nervous system7.45e-3375
regional part of nervous system7.74e-3154
neurectoderm1.84e-2964
neural plate1.84e-2964
presumptive neural plate1.84e-2964
neural tube3.38e-2952
neural rod3.38e-2952
future spinal cord3.38e-2952
neural keel3.38e-2952
ectoderm-derived structure2.42e-2895
ectoderm2.42e-2895
presumptive ectoderm2.42e-2895
gray matter1.13e-2534
ecto-epithelium3.00e-2573
brain4.37e-2447
future brain4.37e-2447
regional part of brain1.53e-2346
pre-chordal neural plate2.44e-2149
brain grey matter6.85e-2129
regional part of telencephalon6.85e-2129
telencephalon6.85e-2129
anterior neural tube1.26e-2040
regional part of forebrain8.08e-2039
forebrain8.08e-2039
future forebrain8.08e-2039
structure with developmental contribution from neural crest5.43e-1892
cerebral cortex9.81e-1521
cerebral hemisphere9.81e-1521
pallium9.81e-1521
regional part of cerebral cortex3.22e-1217
posterior neural tube5.13e-0912
chordal neural plate5.13e-0912
basal ganglion2.47e-078
nuclear complex of neuraxis2.47e-078
aggregate regional part of brain2.47e-078
collection of basal ganglia2.47e-078
cerebral subcortex2.47e-078
occipital lobe5.74e-0710
visual cortex5.74e-0710
neocortex5.74e-0710
spinal cord8.71e-076
dorsal region element8.71e-076
dorsum8.71e-076
Ammon's horn9.16e-077
lobe parts of cerebral cortex9.16e-077
hippocampal formation9.16e-077
limbic system9.16e-077
limbic lobe9.16e-077
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