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{{f5samples
{{f5samples
|id=FF:11449-118I9
|DRA_sample_Accession=rat_CAGE@SAMD00053799
|name=Rat Aortic Smooth Muscle cells, donor3
|DRA_sample_Accession_Zoo=rat_sRNA@SAMD00053799
|sample_id=11449
|accession_numbers=rat_CAGE;DRX057321;DRR063080;DRZ007620;DRZ007633
|rna_tube_id=118I9
|accession_numbers_Zoo=rat_sRNA;DRX163595;DRR172984;DRZ014431
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|sample_cell_lot=lot:1399
|sample_cell_catalog=CAR35405
|sample_company=Cell Applications
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Rat (Rattus rattus)
|sample_strain=Sprague Dawley
|sample_dev_stage=adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=ADULT
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.03
|rna_od260/280=2.03
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=71.4
|rna_concentration=2.856
|sample_note=
|profile_hcage=CNhs11315,LSID767,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10015,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000001,FF:0000147,FF:0000148
|comment=
|created_by=
|creation_date=
|def=
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000002;;FF:0000147;;FF:0000148
|id=FF:11449-118I9
|is_a=EFO:0002091;;FF:0000148
|is_obsolete=
|library_id=CNhs11315
|name=Rat Aortic Smooth Muscle cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11315,LSID767,release009,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10015,,,
|rna_box=118
|rna_catalog_number=N/A
|rna_concentration=2.856
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.03
|rna_od260/280=2.03
|rna_position=I9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118I9
|rna_weight_ug=71.4
|sample_age=ADULT
|sample_category=primary cells
|sample_cell_catalog=CAR35405
|sample_cell_line=
|sample_cell_lot=lot:1399
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11449
|sample_note=
|sample_sex=male
|sample_species=Rattus norvegicus
|sample_strain=Sprague Dawley
|sample_tissue=aorta
|top_motifs=
|xref=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=gi3TrQ9wOhwsh6MVmlDg7D;loc=rn6::chr4:113862631..113887928+
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_rat;search_select_hide=table111:FF:11449-118I9;search_select_hide=table117:FF:11449-118I9
|zoo_library_id=SRhi10015.ACTTGA
}}
}}

Latest revision as of 09:38, 5 June 2020


Name:Rat Aortic Smooth Muscle cells, donor3
Species:Rattus norvegicus
Library ID:CNhs11315
Sample type:primary cells
ZENBU report :link
Additional information
Sample information
strainSprague Dawley
tissueaorta
dev stageadult
sexmale
ageADULT
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
rat_CAGE  SAMD00053799
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11315 rat_CAGE DRX057321 DRR063080
Accession ID

Library idBAMCTSS
CNhs11315 DRZ007620 DRZ007633

sRNA Accession numbers
MethodSample accession id
rat_sRNA  SAMD00053799
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.ACTTGA rat_sRNA DRX163595 DRR172984
Accession ID

Library idBAMCTSS
SRhi10015.ACTTGA DRZ014431



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000147 (rat sample)
0000148 (rat aortic smooth muscle cell)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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