FFCP PHASE1:Mm9::chr10:105907337..105907423,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=327814 | |EntrezGene=327814 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=B8QI34,E9Q6F1,Q8BSS9 | |UniProt=B8QI34,E9Q6F1,Q8BSS9 | ||
|association_with_transcript=0bp_to_ENSMUST00000029404,ENSMUST00000164533,ENSMUST00000169303,NM_001205341,NM_177373,uc007gyr.1,uc007gys.1_5end | |association_with_transcript=0bp_to_ENSMUST00000029404,ENSMUST00000164533,ENSMUST00000169303,NM_001205341,NM_177373,uc007gyr.1,uc007gys.1_5end | ||
|cluster_id=chr10:105907337..105907423,+ | |||
|description=CAGE_peak_1_at_Ppfia2_5end | |description=CAGE_peak_1_at_Ppfia2_5end | ||
|id=chr10:105907337..105907423,+ | |id=chr10:105907337..105907423,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.93e-12!33;CL:0000047!1.93e-12!33;CL:0000031!1.93e-12!33;CL:0000404!1.93e-12!33;CL:0000117!8.64e-12!23;CL:0000337!8.64e-12!23;CL:0000393!2.77e-09!39;CL:0000211!2.77e-09!39;CL:0000221!4.97e-07!44;CL:0000133!4.97e-07!44;CL:0002319!5.52e-07!43 | |ontology_enrichment_celltype=CL:0000540!1.93e-12!33;CL:0000047!1.93e-12!33;CL:0000031!1.93e-12!33;CL:0000404!1.93e-12!33;CL:0000117!8.64e-12!23;CL:0000337!8.64e-12!23;CL:0000393!2.77e-09!39;CL:0000211!2.77e-09!39;CL:0000221!4.97e-07!44;CL:0000133!4.97e-07!44;CL:0002319!5.52e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-14,23;CL:0000337,1.52e-14,23;CL:0000540,4.71e-14,33;CL:0000047,4.71e-14,33;CL:0000031,4.71e-14,33;CL:0000404,4.71e-14,33;CL:0000393,1.81e-11,39;CL:0000211,1.81e-11,39;CL:0002319,9.45e-09,43;CL:0000221,2.58e-08,44;CL:0000133,2.58e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.16e-25!71;UBERON:0003075!2.16e-25!71;UBERON:0007284!2.16e-25!71;UBERON:0004121!1.76e-23!102;UBERON:0000924!1.76e-23!102;UBERON:0006601!1.76e-23!102;UBERON:0001017!8.25e-23!73;UBERON:0005743!8.25e-23!73;UBERON:0000033!8.47e-23!63;UBERON:0000073!9.83e-23!75;UBERON:0001016!9.83e-23!75;UBERON:0001049!3.78e-21!52;UBERON:0005068!3.78e-21!52;UBERON:0006241!3.78e-21!52;UBERON:0007135!3.78e-21!52;UBERON:0003056!2.65e-20!49;UBERON:0000955!3.24e-20!50;UBERON:0006238!3.24e-20!50;UBERON:0002616!1.83e-19!49;UBERON:0003080!7.59e-17!40;UBERON:0002020!2.17e-16!34;UBERON:0002780!2.87e-16!39;UBERON:0001890!2.87e-16!39;UBERON:0006240!2.87e-16!39;UBERON:0002791!1.37e-13!29;UBERON:0003528!1.37e-13!29;UBERON:0001893!1.37e-13!29;UBERON:0007811!6.10e-10!86;UBERON:0000956!1.91e-09!21;UBERON:0001869!1.91e-09!21;UBERON:0000203!1.91e-09!21;UBERON:0000153!2.98e-09!94;UBERON:0000468!3.53e-08!333;UBERON:0002021!4.80e-08!10;UBERON:0000411!4.80e-08!10;UBERON:0001950!4.80e-08!10;UBERON:0002619!7.68e-08!17;UBERON:0000025!1.57e-07!114;UBERON:0004111!5.98e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.72e-32,64;UBERON:0003075,1.72e-32,64;UBERON:0007284,1.72e-32,64;UBERON:0001017,4.69e-29,73;UBERON:0000073,1.68e-28,54;UBERON:0001016,2.22e-28,75;UBERON:0001049,7.51e-27,52;UBERON:0005068,7.51e-27,52;UBERON:0006241,7.51e-27,52;UBERON:0007135,7.51e-27,52;UBERON:0010371,2.74e-26,73;UBERON:0004121,3.66e-26,95;UBERON:0000924,3.66e-26,95;UBERON:0006601,3.66e-26,95;UBERON:0003056,1.40e-25,49;UBERON:0000955,2.22e-23,47;UBERON:0006238,2.22e-23,47;UBERON:0002616,1.94e-22,46;UBERON:0002020,2.99e-21,34;UBERON:0010314,3.05e-21,92;UBERON:0003080,3.51e-21,40;UBERON:0002780,1.92e-20,39;UBERON:0001890,1.92e-20,39;UBERON:0006240,1.92e-20,39;UBERON:0003528,1.15e-17,29;UBERON:0002791,1.15e-17,29;UBERON:0001893,1.15e-17,29;UBERON:0000956,2.31e-12,21;UBERON:0001869,2.31e-12,21;UBERON:0000203,2.31e-12,21;UBERON:0002619,2.51e-10,17;UBERON:0002021,8.52e-10,10;UBERON:0000411,8.52e-10,10;UBERON:0001950,8.52e-10,10 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,6.29320347117916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,1.43266719969378,1.03134418455488,11.3297218081375,14.8117474196169,6.97214543856797,0,0,0,0,0,0,0,9.22837549545451,7.42532660824299,7.15104868594699,6.56997264128748,11.2642955885323,8.94182834269164,8.53024692062304,6.43453150627015,20.9220173898839,14.5563565417114,16.1286859919056,10.0233578674947,13.5401712531566,17.1901412283731,6.97957497503452,14.6318278608237,22.6141406709679,35.3554302568401,28.6167078406197,22.7407323906867,1.06016670666458,0.68014404096107,10.7249860819621,0,0,0,0,0.896053774194671,0.702222100658759,0,0,0,0.985903938436763,0,0,0,0,0,0,1.02765491747154,0,1.48442139064825,1.04091196059682,2.13125834818499,0.922461989024234,0.904335843315735,2.11659672844269,0.125666591329675,0.247194967734374,0.289198713839823,0,0.808834249737046,1.32504911076236,1.45462575940567,0,26.0574909340277,32.4642395560855,0,0,0,0,16.3271796951257,17.3850229071078,28.5235379296202,22.4233373048037,25.3158302757027,16.4152555202052,19.3067103050632,0.407357455401265,0.622034853050465,0.252722758433675,3.99839526184301,1.43132487258974,2.75882525320168,4.50155324513373,14.6183673300644,13.1310443362063,18.4483757210184,14.523767306758,10.3481348295606,0.215567992932842,0.189106080167819,0.351902248327898,0.657587197282725,0.834141747676794,1.0447564995665,1.64625709126355,0.199034266818493,0,0,0,0,0.938104239924385,0.180062061461015,0.710234206755631,0.196764231747404,0.771335564436891,0.930135779001631,0.536546802799238,0.700592054203017,0.329119699826961,1.14917224855367,0.56748166682099,0.438599962275997,1.53685080703735,0.805238512562231,35.1184214102093,25.314534645304,0.330418782983798,0,0.853153002140936,0.696710015581316,0.77320476793256,1.21010114774006,0.444756087689741,0.380451252225118,0.474529061544512,1.31759163779209,0.502670417600539,1.1937388322469,0.974820435595601,0,0.216138049874694,0.199141273254367,0,0.456994050438915,0,0.203651327845314,0.193952487167626,0.49095073923223,0.442655759869801,0.295220295959204,0.31399745568275,0.246794327843601,0.592905254174298,0,0.196558995113203,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,1.5601883655728,0.505157755894224,0.179397413521912,0,0.554259570499814,1.13694847062291,1.14075483509418,0.678980343100753,0.469380496577004,0.335012514883631,1.42826184531608,0.780534591431195,1.10344600874334,0.44292937929755,0.318909537314974,0.163863314715738,0.518054945597687,0.433947175744535,0,0,0,0.275936746304732,11.559642479121,14.0654023910644,0,0.757412781613119,2.52406575533005,3.12350995437311,5.81643173878557,0.716906393857656,0.891194696329576,1.41538265394416,1.61924280669958,2.63030272120181,1.97643888973262,55.5885877409726,0.141940085208269,0.178065603667255,0.81443479676788,0.494910368917606,0,0,0,0,0,0.307435147943927,0.516856586336442,1.09060118843252,0.712994756769443,0.316036757935816,0,0,16.000661470428,2.34079422240703,0.646793418913773,1.28602221018955,5.14286677562593,10.167022603318,6.41741180348272,2.13125464380219,0,0.42366414172764,0.441056796109924,0.65954501176592,0.807322133479528,0.361877549568935,0.238744688006273,0.164140899745061,0.291480836629851,12.4234952347041,0.341741761595705,0.412773735926445,1.29636169158798,0.941842285023455,0.820165366326151,0.686334519619568,0,0,0,0,0.949007980743406,0.813277868507395,1.29606408986162,2.29997125615916,1.74690050996942,1.61837215661785,1.07449492442937,0.785267825952089,0.129614973291793,0,0,0,0,0.194451188344048,1.03327858782185,0.675824501963113,1.17357238645754,0.39061315453185,0.209718688851422,0,0,0,0.405450430580328,0.410843828659309,0.25984164595559,0.358053391334963,0,0,0.295379054349154,0,0.15241361331,0,0.0974578807397524,0,0,0.680191150845634,0,0,0,0.579568782096571,0.375364950902364,0.549454872801795,0.214368379079066,0,27.1080884456192,27.6195141904306,30.9363577257274,30.5898664571764,27.4033007908257,27.1941803060292,29.0259675099676,20.7147753483141,36.7045351277206,26.4057758993428,1.3492355185943,5.98537310101547,3.92687293234509,5.83456120963906,3.14419743941973,4.96377472815038,8.66762238426299,10.0957178047058,7.70206103020357,6.06473308233114,6.59046179714623,8.11093267960128,10.0196412992774,8.89949618427683,8.55788487438638,13.3362233559261,7.41659686047075,7.7163688185482,7.41754621445952,8.24313952752625,5.82877729055206,8.87379030796687,7.86839426826159,9.01147783120437,7.90518795488777,6.51532480765909,8.23175877927476,7.62902163169744,7.60503037536826,7.2948495315506,6.99946606932627,6.10727790728493,8.18462086339379,6.35241048862461,4.24394544158511,8.74337022782811,7.25187986180766,6.23126056740065,2.86932498103265,2.42650561031467,1.85494268496337 | |phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,6.29320347117916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,1.43266719969378,1.03134418455488,11.3297218081375,14.8117474196169,6.97214543856797,0,0,0,0,0,0,0,9.22837549545451,7.42532660824299,7.15104868594699,6.56997264128748,11.2642955885323,8.94182834269164,8.53024692062304,6.43453150627015,20.9220173898839,14.5563565417114,16.1286859919056,10.0233578674947,13.5401712531566,17.1901412283731,6.97957497503452,14.6318278608237,22.6141406709679,35.3554302568401,28.6167078406197,22.7407323906867,1.06016670666458,0.68014404096107,10.7249860819621,0,0,0,0,0.896053774194671,0.702222100658759,0,0,0,0.985903938436763,0,0,0,0,0,0,1.02765491747154,0,1.48442139064825,1.04091196059682,2.13125834818499,0.922461989024234,0.904335843315735,2.11659672844269,0.125666591329675,0.247194967734374,0.289198713839823,0,0.808834249737046,1.32504911076236,1.45462575940567,0,26.0574909340277,32.4642395560855,0,0,0,0,16.3271796951257,17.3850229071078,28.5235379296202,22.4233373048037,25.3158302757027,16.4152555202052,19.3067103050632,0.407357455401265,0.622034853050465,0.252722758433675,3.99839526184301,1.43132487258974,2.75882525320168,4.50155324513373,14.6183673300644,13.1310443362063,18.4483757210184,14.523767306758,10.3481348295606,0.215567992932842,0.189106080167819,0.351902248327898,0.657587197282725,0.834141747676794,1.0447564995665,1.64625709126355,0.199034266818493,0,0,0,0,0.938104239924385,0.180062061461015,0.710234206755631,0.196764231747404,0.771335564436891,0.930135779001631,0.536546802799238,0.700592054203017,0.329119699826961,1.14917224855367,0.56748166682099,0.438599962275997,1.53685080703735,0.805238512562231,35.1184214102093,25.314534645304,0.330418782983798,0,0.853153002140936,0.696710015581316,0.77320476793256,1.21010114774006,0.444756087689741,0.380451252225118,0.474529061544512,1.31759163779209,0.502670417600539,1.1937388322469,0.974820435595601,0,0.216138049874694,0.199141273254367,0,0.456994050438915,0,0.203651327845314,0.193952487167626,0.49095073923223,0.442655759869801,0.295220295959204,0.31399745568275,0.246794327843601,0.592905254174298,0,0.196558995113203,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,1.5601883655728,0.505157755894224,0.179397413521912,0,0.554259570499814,1.13694847062291,1.14075483509418,0.678980343100753,0.469380496577004,0.335012514883631,1.42826184531608,0.780534591431195,1.10344600874334,0.44292937929755,0.318909537314974,0.163863314715738,0.518054945597687,0.433947175744535,0,0,0,0.275936746304732,11.559642479121,14.0654023910644,0,0.757412781613119,2.52406575533005,3.12350995437311,5.81643173878557,0.716906393857656,0.891194696329576,1.41538265394416,1.61924280669958,2.63030272120181,1.97643888973262,55.5885877409726,0.141940085208269,0.178065603667255,0.81443479676788,0.494910368917606,0,0,0,0,0,0.307435147943927,0.516856586336442,1.09060118843252,0.712994756769443,0.316036757935816,0,0,16.000661470428,2.34079422240703,0.646793418913773,1.28602221018955,5.14286677562593,10.167022603318,6.41741180348272,2.13125464380219,0,0.42366414172764,0.441056796109924,0.65954501176592,0.807322133479528,0.361877549568935,0.238744688006273,0.164140899745061,0.291480836629851,12.4234952347041,0.341741761595705,0.412773735926445,1.29636169158798,0.941842285023455,0.820165366326151,0.686334519619568,0,0,0,0,0.949007980743406,0.813277868507395,1.29606408986162,2.29997125615916,1.74690050996942,1.61837215661785,1.07449492442937,0.785267825952089,0.129614973291793,0,0,0,0,0.194451188344048,1.03327858782185,0.675824501963113,1.17357238645754,0.39061315453185,0.209718688851422,0,0,0,0.405450430580328,0.410843828659309,0.25984164595559,0.358053391334963,0,0,0.295379054349154,0,0.15241361331,0,0.0974578807397524,0,0,0.680191150845634,0,0,0,0.579568782096571,0.375364950902364,0.549454872801795,0.214368379079066,0,27.1080884456192,27.6195141904306,30.9363577257274,30.5898664571764,27.4033007908257,27.1941803060292,29.0259675099676,20.7147753483141,36.7045351277206,26.4057758993428,1.3492355185943,5.98537310101547,3.92687293234509,5.83456120963906,3.14419743941973,4.96377472815038,8.66762238426299,10.0957178047058,7.70206103020357,6.06473308233114,6.59046179714623,8.11093267960128,10.0196412992774,8.89949618427683,8.55788487438638,13.3362233559261,7.41659686047075,7.7163688185482,7.41754621445952,8.24313952752625,5.82877729055206,8.87379030796687,7.86839426826159,9.01147783120437,7.90518795488777,6.51532480765909,8.23175877927476,7.62902163169744,7.60503037536826,7.2948495315506,6.99946606932627,6.10727790728493,8.18462086339379,6.35241048862461,4.24394544158511,8.74337022782811,7.25187986180766,6.23126056740065,2.86932498103265,2.42650561031467,1.85494268496337 | ||
|short_description=p1@Ppfia2 | |short_description=p1@Ppfia2 | ||
}} | }} |
Latest revision as of 13:46, 25 September 2015
Short description: | p1@Ppfia2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppfia2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000029404, ENSMUST00000164533, ENSMUST00000169303, NM_001205341, NM_177373, uc007gyr.1, uc007gys.1_5end |
EntrezGene: | Ppfia2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.52e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-14 | 23 |
neuron | 4.71e-14 | 33 |
neuronal stem cell | 4.71e-14 | 33 |
neuroblast | 4.71e-14 | 33 |
electrically signaling cell | 4.71e-14 | 33 |
electrically responsive cell | 1.81e-11 | 39 |
electrically active cell | 1.81e-11 | 39 |
neural cell | 9.45e-09 | 43 |
ectodermal cell | 2.58e-08 | 44 |
neurectodermal cell | 2.58e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.72e-32 | 64 |
neural plate | 1.72e-32 | 64 |
presumptive neural plate | 1.72e-32 | 64 |
central nervous system | 4.69e-29 | 73 |
regional part of nervous system | 1.68e-28 | 54 |
nervous system | 2.22e-28 | 75 |
neural tube | 7.51e-27 | 52 |
neural rod | 7.51e-27 | 52 |
future spinal cord | 7.51e-27 | 52 |
neural keel | 7.51e-27 | 52 |
ecto-epithelium | 2.74e-26 | 73 |
ectoderm-derived structure | 3.66e-26 | 95 |
ectoderm | 3.66e-26 | 95 |
presumptive ectoderm | 3.66e-26 | 95 |
pre-chordal neural plate | 1.40e-25 | 49 |
brain | 2.22e-23 | 47 |
future brain | 2.22e-23 | 47 |
regional part of brain | 1.94e-22 | 46 |
gray matter | 2.99e-21 | 34 |
structure with developmental contribution from neural crest | 3.05e-21 | 92 |
anterior neural tube | 3.51e-21 | 40 |
regional part of forebrain | 1.92e-20 | 39 |
forebrain | 1.92e-20 | 39 |
future forebrain | 1.92e-20 | 39 |
brain grey matter | 1.15e-17 | 29 |
regional part of telencephalon | 1.15e-17 | 29 |
telencephalon | 1.15e-17 | 29 |
cerebral cortex | 2.31e-12 | 21 |
cerebral hemisphere | 2.31e-12 | 21 |
pallium | 2.31e-12 | 21 |
regional part of cerebral cortex | 2.51e-10 | 17 |
occipital lobe | 8.52e-10 | 10 |
visual cortex | 8.52e-10 | 10 |
neocortex | 8.52e-10 | 10 |