FFCP PHASE1:Hg19::chr12:104645296..104645338,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12437 | |HGNC=12437 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000526006_5end | |association_with_transcript=0bp_to_ENST00000526006_5end | ||
|cluster_id=chr12:104645296..104645338,+ | |||
|coexpression_cluster_id=C48 | |||
|description=CAGE_peak_11_at_TXNRD1_5end | |description=CAGE_peak_11_at_TXNRD1_5end | ||
|id=chr12:104645296..104645338,+ | |id=chr12:104645296..104645338,+ | ||
|ontology_enrichment_celltype=CL:0002593!1.38e-08!2;CL:0002595!2.11e-07!5 | |ontology_enrichment_celltype=CL:0002593!1.38e-08!2;CL:0002595!2.11e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002593;2.99e-10;2!CL:0000632;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002593,3.58e-10,2;CL:0000632,3.16e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005062;4.70e-19;4!UBERON:0007284;4.70e-19;4!UBERON:0009847;2.97e-07;3!UBERON:0003353;2.97e-07;3!UBERON:0006603;5.04e-07;65 | |||
|ontology_enrichment_disease=DOID:114!3.06e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:114;5.68e-37;2!DOID:2513;1.30e-19;1!DOID:178;3.91e-19;1!DOID:326;3.91e-19;1!DOID:3978;3.91e-19;1!DOID:3394;3.91e-19;1!DOID:5844;3.91e-19;1!DOID:3571;3.91e-19;1!DOID:1287;4.70e-19;4!DOID:3451;1.72e-10;2!DOID:4159;1.72e-10;2!DOID:0060122;1.72e-10;2!DOID:3350;2.99e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.94e-37,2;DOID:2513,1.30e-19,1;DOID:178,2.71e-19,1;DOID:326,2.71e-19,1;DOID:3978,2.71e-19,1;DOID:3394,2.71e-19,1;DOID:5844,2.71e-19,1;DOID:1287,3.92e-19,4;DOID:3571,4.69e-19,1;DOID:3451,1.72e-10,2;DOID:4159,1.72e-10,2;DOID:0060122,1.72e-10,2;DOID:3350,3.27e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.48e-17!115;UBERON:0006947!6.35e-12!3;UBERON:0004054!6.35e-12!3;UBERON:0003135!8.38e-12!11;UBERON:0005904!4.75e-09!4;UBERON:0002456!1.38e-08!2;UBERON:0003133!1.64e-08!48;UBERON:0003513!7.01e-08!8;UBERON:0005156!8.97e-08!59;UBERON:0000990!8.97e-08!59;UBERON:0003101!1.57e-07!22;UBERON:0000079!1.57e-07!22;UBERON:0003834!2.11e-07!5;UBERON:0001533!2.11e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;4.87e-25;3!UBERON:0000946;4.87e-25;3!UBERON:0002135;1.88e-19;1!UBERON:0002146;2.25e-19;1!UBERON:0005623;2.25e-19;1!UBERON:0007100;4.09e-18;25!UBERON:0001255;1.89e-10;2!UBERON:0001556;1.89e-10;2!UBERON:0002133;2.07e-10;2!UBERON:0002456;2.99e-10;2!UBERON:0010313;3.37e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,4.87e-25,3;UBERON:0009751,4.87e-25,3;UBERON:0000946,4.87e-25,3;UBERON:0002523,4.87e-25,3;UBERON:0005983,4.87e-25,3;UBERON:0002165,4.87e-25,3;UBERON:0002062,4.87e-25,3;UBERON:0007280,4.87e-25,3;UBERON:0002135,1.88e-19,1;UBERON:0002146,2.25e-19,1;UBERON:0005623,2.25e-19,1;UBERON:0007100,7.90e-17,27;UBERON:0004797,2.55e-11,7;UBERON:0001255,1.89e-10,2;UBERON:0001556,1.89e-10,2;UBERON:0002133,2.07e-10,2;UBERON:0002456,3.58e-10,2;UBERON:0007023,1.07e-09,114;UBERON:0003103,1.88e-09,68;UBERON:0010313,3.37e-08,10;UBERON:0002342,3.37e-08,10;UBERON:0005062,3.37e-08,10 | |||
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| ||
|short_description=p11@TXNRD1 | |short_description=p11@TXNRD1 | ||
}} | }} |
Latest revision as of 23:47, 15 September 2015
Short description: | p11@TXNRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_TXNRD1_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 0bp_to_ENST00000526006_5end |
EntrezGene: | NA |
HGNC: | 12437 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 3.58e-10 | 2 |
hepatic stellate cell | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
valve | 4.87e-25 | 3 |
cardiac mesenchyme | 4.87e-25 | 3 |
cardial valve | 4.87e-25 | 3 |
tunica intima | 4.87e-25 | 3 |
heart layer | 4.87e-25 | 3 |
endocardium | 4.87e-25 | 3 |
endocardial cushion | 4.87e-25 | 3 |
presumptive endocardium | 4.87e-25 | 3 |
mitral valve | 1.88e-19 | 1 |
pulmonary valve | 2.25e-19 | 1 |
semi-lunar valve | 2.25e-19 | 1 |
primary circulatory organ | 7.90e-17 | 27 |
blood vessel layer | 2.55e-11 | 7 |
urinary bladder | 1.89e-10 | 2 |
lower urinary tract | 1.89e-10 | 2 |
atrioventricular valve | 2.07e-10 | 2 |
internal thoracic artery | 3.58e-10 | 2 |
adult organism | 1.07e-09 | 114 |
compound organ | 1.88e-09 | 68 |
neural crest-derived structure | 3.37e-08 | 10 |
neural crest | 3.37e-08 | 10 |
neural fold | 3.37e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.94e-37 | 2 |
basal cell carcinoma | 1.30e-19 | 1 |
vascular disease | 2.71e-19 | 1 |
ischemia | 2.71e-19 | 1 |
extrinsic cardiomyopathy | 2.71e-19 | 1 |
myocardial ischemia | 2.71e-19 | 1 |
myocardial infarction | 2.71e-19 | 1 |
cardiovascular system disease | 3.92e-19 | 4 |
liver cancer | 4.69e-19 | 1 |
skin carcinoma | 1.72e-10 | 2 |
skin cancer | 1.72e-10 | 2 |
integumentary system cancer | 1.72e-10 | 2 |
mesenchymal cell neoplasm | 3.27e-10 | 2 |