FFCP PHASE1:Hg19::chr12:18395888..18395907,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:18395888..18395907,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_at_chr12:18395888..18395907,+ | |description=CAGE_peak_at_chr12:18395888..18395907,+ | ||
|id=chr12:18395888..18395907,+ | |id=chr12:18395888..18395907,+ | ||
|ontology_enrichment_celltype=CL:0000181!2.92e-09!12;CL:0000417!2.92e-09!12;CL:0000668!2.92e-09!12;CL:0000414!2.92e-09!12;CL:0000412!2.92e-09!12;CL:0000182!2.92e-09!12;CL:0000319!1.11e-07!1 | |ontology_enrichment_celltype=CL:0000181!2.92e-09!12;CL:0000417!2.92e-09!12;CL:0000668!2.92e-09!12;CL:0000414!2.92e-09!12;CL:0000412!2.92e-09!12;CL:0000182!2.92e-09!12;CL:0000319!1.11e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.57e-16;12!CL:1000415;4.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.64e-16,12;CL:1000415,4.17e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006242;7.68e-13;1!UBERON:0004161;3.67e-10;11!UBERON:0009497;1.11e-08;13!UBERON:0007297;5.28e-07;2 | |||
|ontology_enrichment_disease=DOID:3030!1.11e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.82e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.74e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0009497!6.23e-16!25;UBERON:0000015!6.23e-16!25;UBERON:0002423!6.23e-16!25;UBERON:0006235!6.23e-16!25;UBERON:0004161!6.23e-16!25;UBERON:0008835!1.82e-10!22;UBERON:0003894!1.82e-10!22;UBERON:0009854!5.51e-10!23;UBERON:0002110!9.30e-10!3;UBERON:0006242!9.30e-10!3;UBERON:0007499!3.85e-09!25;UBERON:0002294!6.74e-09!7;UBERON:0001173!6.74e-09!7;UBERON:0004912!6.74e-09!7;UBERON:0009856!9.10e-09!26;UBERON:0002107!9.11e-09!19;UBERON:0006925!9.11e-09!19;UBERON:0008836!9.11e-09!19;UBERON:0004119!9.28e-09!169;UBERON:0000925!9.28e-09!169;UBERON:0006595!9.28e-09!169;UBERON:0001007!1.22e-08!155;UBERON:0001555!1.22e-08!155;UBERON:0007026!1.22e-08!155;UBERON:0003929!1.84e-08!54;UBERON:0005172!2.32e-08!55;UBERON:0005173!2.32e-08!55;UBERON:0004921!2.79e-08!129;UBERON:0004185!2.79e-08!129;UBERON:0000077!3.00e-08!130;UBERON:0001301!7.45e-08!1;UBERON:0005177!8.26e-08!107;UBERON:0002417!2.13e-07!61;UBERON:0000916!2.13e-07!61;UBERON:0000466!2.32e-07!126;UBERON:0002108!4.25e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.69e-22;25!UBERON:0002110;2.48e-16;3!UBERON:0002107;1.22e-15;19!UBERON:0006925;1.22e-15;19!UBERON:0001301;9.73e-13;1!UBERON:0002108;3.50e-10;4!UBERON:0002365;7.00e-10;31!UBERON:0002330;7.00e-10;31!UBERON:0005409;2.54e-08;22!UBERON:0005172;4.66e-08;52!UBERON:0005173;4.66e-08;52!UBERON:0002368;5.50e-08;33!UBERON:0002294;1.60e-07;7!UBERON:0001173;1.60e-07;7!UBERON:0001007;2.66e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,1.72e-22,25;UBERON:0000015,1.72e-22,25;UBERON:0002423,1.72e-22,25;UBERON:0006235,1.72e-22,25;UBERON:0004161,1.72e-22,25;UBERON:0002110,2.38e-16,3;UBERON:0006242,2.38e-16,3;UBERON:0002107,1.26e-15,19;UBERON:0006925,1.26e-15,19;UBERON:0008836,1.26e-15,19;UBERON:0008835,1.72e-13,22;UBERON:0003894,1.72e-13,22;UBERON:0005172,4.51e-13,54;UBERON:0005173,4.51e-13,54;UBERON:0009854,6.67e-13,23;UBERON:0001301,9.73e-13,1;UBERON:0007499,7.27e-12,25;UBERON:0002417,1.11e-11,60;UBERON:0000916,1.11e-11,60;UBERON:0009856,2.09e-11,26;UBERON:0002108,3.27e-10,4;UBERON:0003929,4.23e-10,54;UBERON:0002365,1.50e-09,31;UBERON:0002330,1.50e-09,31;UBERON:0002368,1.90e-08,35;UBERON:0001007,2.96e-08,145;UBERON:0001555,2.96e-08,145;UBERON:0007026,2.96e-08,145;UBERON:0005409,2.17e-07,25;UBERON:0004119,2.41e-07,160;UBERON:0000925,2.41e-07,160;UBERON:0006595,2.41e-07,160;UBERON:0004921,6.32e-07,118 | |||
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|short_description=p@chr12:18395888..18395907,+ | |short_description=p@chr12:18395888..18395907,+ | ||
}} | }} |
Latest revision as of 07:20, 24 July 2015
Short description: | p@chr12:18395888..18395907, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:18395888..18395907, + |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.64e-16 | 12 |
epithelial cell of gall bladder | 4.17e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 1.72e-22 | 25 |
anatomical boundary | 1.72e-22 | 25 |
hepatobiliary system | 1.72e-22 | 25 |
foregut-midgut junction | 1.72e-22 | 25 |
septum transversum | 1.72e-22 | 25 |
gallbladder | 2.38e-16 | 3 |
gall bladder primordium | 2.38e-16 | 3 |
liver | 1.26e-15 | 19 |
digestive gland | 1.26e-15 | 19 |
liver bud | 1.26e-15 | 19 |
hepatic diverticulum | 1.72e-13 | 22 |
liver primordium | 1.72e-13 | 22 |
abdomen element | 4.51e-13 | 54 |
abdominal segment element | 4.51e-13 | 54 |
digestive tract diverticulum | 6.67e-13 | 23 |
epididymis | 9.73e-13 | 1 |
epithelial sac | 7.27e-12 | 25 |
abdominal segment of trunk | 1.11e-11 | 60 |
abdomen | 1.11e-11 | 60 |
sac | 2.09e-11 | 26 |
small intestine | 3.27e-10 | 4 |
gut epithelium | 4.23e-10 | 54 |
exocrine gland | 1.50e-09 | 31 |
exocrine system | 1.50e-09 | 31 |
endocrine gland | 1.90e-08 | 35 |
digestive system | 2.96e-08 | 145 |
digestive tract | 2.96e-08 | 145 |
primitive gut | 2.96e-08 | 145 |
gastrointestinal system | 2.17e-07 | 25 |
endoderm-derived structure | 2.41e-07 | 160 |
endoderm | 2.41e-07 | 160 |
presumptive endoderm | 2.41e-07 | 160 |
subdivision of digestive tract | 6.32e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.74e-07 | 2 |