FFCP PHASE1:Mm9::chr18:61336648..61336711,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=106894 | |EntrezGene=106894 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=E9Q9W3,G3X9M3,Q6NZP6,Q8BY57,Q8R168,Q9JJ64,Q6AXF8,Q6PEF4,Q8BZN3 | |UniProt=E9Q9W3,G3X9M3,Q6NZP6,Q8BY57,Q8R168,Q9JJ64,Q6AXF8,Q6PEF4,Q8BZN3 | ||
|association_with_transcript=0bp_to_ENSMUST00000025524,ENSMUST00000091884,NM_134134,NM_178277,uc008fbq.1,uc008fbr.1,uc008fbs.1,uc008fbt.1,uc012bdp.1_5end | |association_with_transcript=0bp_to_ENSMUST00000025524,ENSMUST00000091884,NM_134134,NM_178277,uc008fbq.1,uc008fbr.1,uc008fbs.1,uc008fbt.1,uc012bdp.1_5end | ||
|cluster_id=chr18:61336648..61336711,- | |||
|description=CAGE_peak_1_at_Hmgxb3_5end | |description=CAGE_peak_1_at_Hmgxb3_5end | ||
|id=chr18:61336648..61336711,- | |id=chr18:61336648..61336711,- | ||
|ontology_enrichment_celltype=CL:0000540!1.72e-08!33;CL:0000047!1.72e-08!33;CL:0000031!1.72e-08!33;CL:0000404!1.72e-08!33;CL:0002319!1.08e-07!43;CL:0000221!1.98e-07!44;CL:0000133!1.98e-07!44 | |ontology_enrichment_celltype=CL:0000540!1.72e-08!33;CL:0000047!1.72e-08!33;CL:0000031!1.72e-08!33;CL:0000404!1.72e-08!33;CL:0002319!1.08e-07!43;CL:0000221!1.98e-07!44;CL:0000133!1.98e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.72e-08,33;CL:0000047,1.72e-08,33;CL:0000031,1.72e-08,33;CL:0000404,1.72e-08,33;CL:0002319,1.08e-07,43;CL:0000221,1.98e-07,44;CL:0000133,1.98e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.54e-17!75;UBERON:0001016!2.54e-17!75;UBERON:0001017!2.90e-17!73;UBERON:0005743!2.90e-17!73;UBERON:0004121!2.17e-15!102;UBERON:0000924!2.17e-15!102;UBERON:0006601!2.17e-15!102;UBERON:0000153!5.39e-14!94;UBERON:0007811!7.00e-14!86;UBERON:0000955!3.18e-13!50;UBERON:0006238!3.18e-13!50;UBERON:0001049!5.54e-13!52;UBERON:0005068!5.54e-13!52;UBERON:0006241!5.54e-13!52;UBERON:0007135!5.54e-13!52;UBERON:0002616!9.13e-13!49;UBERON:0002346!6.27e-12!71;UBERON:0003075!6.27e-12!71;UBERON:0007284!6.27e-12!71;UBERON:0003080!7.18e-12!40;UBERON:0002780!7.42e-12!39;UBERON:0001890!7.42e-12!39;UBERON:0006240!7.42e-12!39;UBERON:0002020!1.87e-11!34;UBERON:0000033!3.64e-11!63;UBERON:0003056!5.23e-11!49;UBERON:0002791!1.05e-10!29;UBERON:0003528!1.05e-10!29;UBERON:0001893!1.05e-10!29;UBERON:0000956!2.03e-08!21;UBERON:0001869!2.03e-08!21;UBERON:0000203!2.03e-08!21;UBERON:0002619!5.79e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.54e-17,75;UBERON:0001017,2.90e-17,73;UBERON:0004121,7.73e-16,95;UBERON:0000924,7.73e-16,95;UBERON:0006601,7.73e-16,95;UBERON:0000073,1.08e-13,54;UBERON:0001049,5.54e-13,52;UBERON:0005068,5.54e-13,52;UBERON:0006241,5.54e-13,52;UBERON:0007135,5.54e-13,52;UBERON:0002346,1.37e-12,64;UBERON:0003075,1.37e-12,64;UBERON:0007284,1.37e-12,64;UBERON:0000955,2.91e-12,47;UBERON:0006238,2.91e-12,47;UBERON:0003080,7.18e-12,40;UBERON:0002780,7.42e-12,39;UBERON:0001890,7.42e-12,39;UBERON:0006240,7.42e-12,39;UBERON:0002616,8.23e-12,46;UBERON:0010371,1.76e-11,73;UBERON:0002020,1.87e-11,34;UBERON:0003056,5.23e-11,49;UBERON:0003528,1.05e-10,29;UBERON:0002791,1.05e-10,29;UBERON:0001893,1.05e-10,29;UBERON:0010314,6.81e-10,92;UBERON:0000956,2.03e-08,21;UBERON:0001869,2.03e-08,21;UBERON:0000203,2.03e-08,21;UBERON:0002619,5.79e-07,17 | |||
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| ||
|short_description=p1@Hmgxb3 | |short_description=p1@Hmgxb3 | ||
}} | }} |
Latest revision as of 14:02, 1 October 2015
Short description: | p1@Hmgxb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hmgxb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000025524, ENSMUST00000091884, NM_134134, NM_178277, uc008fbq.1, uc008fbr.1, uc008fbs.1, uc008fbt.1, uc012bdp.1_5end |
EntrezGene: | Hmgxb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.72e-08 | 33 |
neuronal stem cell | 1.72e-08 | 33 |
neuroblast | 1.72e-08 | 33 |
electrically signaling cell | 1.72e-08 | 33 |
neural cell | 1.08e-07 | 43 |
ectodermal cell | 1.98e-07 | 44 |
neurectodermal cell | 1.98e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.54e-17 | 75 |
central nervous system | 2.90e-17 | 73 |
ectoderm-derived structure | 7.73e-16 | 95 |
ectoderm | 7.73e-16 | 95 |
presumptive ectoderm | 7.73e-16 | 95 |
regional part of nervous system | 1.08e-13 | 54 |
neural tube | 5.54e-13 | 52 |
neural rod | 5.54e-13 | 52 |
future spinal cord | 5.54e-13 | 52 |
neural keel | 5.54e-13 | 52 |
neurectoderm | 1.37e-12 | 64 |
neural plate | 1.37e-12 | 64 |
presumptive neural plate | 1.37e-12 | 64 |
brain | 2.91e-12 | 47 |
future brain | 2.91e-12 | 47 |
anterior neural tube | 7.18e-12 | 40 |
regional part of forebrain | 7.42e-12 | 39 |
forebrain | 7.42e-12 | 39 |
future forebrain | 7.42e-12 | 39 |
regional part of brain | 8.23e-12 | 46 |
ecto-epithelium | 1.76e-11 | 73 |
gray matter | 1.87e-11 | 34 |
pre-chordal neural plate | 5.23e-11 | 49 |
brain grey matter | 1.05e-10 | 29 |
regional part of telencephalon | 1.05e-10 | 29 |
telencephalon | 1.05e-10 | 29 |
structure with developmental contribution from neural crest | 6.81e-10 | 92 |
cerebral cortex | 2.03e-08 | 21 |
cerebral hemisphere | 2.03e-08 | 21 |
pallium | 2.03e-08 | 21 |
regional part of cerebral cortex | 5.79e-07 | 17 |