FFCP PHASE1:Mm9::chr10:126497394..126497443,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216438 | |EntrezGene=216438 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TZ87 | |UniProt=Q3TZ87 | ||
|association_with_transcript=-154bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | |association_with_transcript=-154bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | ||
|cluster_id=chr10:126497394..126497443,- | |||
|description=CAGE_peak_3_at_March9_5end | |description=CAGE_peak_3_at_March9_5end | ||
|id=chr10:126497394..126497443,- | |id=chr10:126497394..126497443,- | ||
|ontology_enrichment_celltype=CL:0000221!4.94e-19!44;CL:0000133!4.94e-19!44;CL:0002319!1.07e-18!43;CL:0000540!3.31e-18!33;CL:0000047!3.31e-18!33;CL:0000031!3.31e-18!33;CL:0000404!3.31e-18!33;CL:0000055!4.24e-18!50;CL:0000393!6.43e-18!39;CL:0000211!6.43e-18!39;CL:0000117!1.24e-15!23;CL:0000337!1.24e-15!23;CL:0002321!1.61e-10!70;CL:0000220!1.61e-10!70 | |ontology_enrichment_celltype=CL:0000221!4.94e-19!44;CL:0000133!4.94e-19!44;CL:0002319!1.07e-18!43;CL:0000540!3.31e-18!33;CL:0000047!3.31e-18!33;CL:0000031!3.31e-18!33;CL:0000404!3.31e-18!33;CL:0000055!4.24e-18!50;CL:0000393!6.43e-18!39;CL:0000211!6.43e-18!39;CL:0000117!1.24e-15!23;CL:0000337!1.24e-15!23;CL:0002321!1.61e-10!70;CL:0000220!1.61e-10!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.46e-20,44;CL:0000133,7.46e-20,44;CL:0002319,1.67e-19,43;CL:0000540,5.47e-19,33;CL:0000047,5.47e-19,33;CL:0000031,5.47e-19,33;CL:0000404,5.47e-19,33;CL:0000393,2.23e-18,39;CL:0000211,2.23e-18,39;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0002321,6.96e-11,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.63e-33!102;UBERON:0000924!5.63e-33!102;UBERON:0006601!5.63e-33!102;UBERON:0001017!1.67e-32!73;UBERON:0005743!1.67e-32!73;UBERON:0000073!1.04e-31!75;UBERON:0001016!1.04e-31!75;UBERON:0002346!7.93e-28!71;UBERON:0003075!7.93e-28!71;UBERON:0007284!7.93e-28!71;UBERON:0000033!2.87e-24!63;UBERON:0001049!2.61e-23!52;UBERON:0005068!2.61e-23!52;UBERON:0006241!2.61e-23!52;UBERON:0007135!2.61e-23!52;UBERON:0000955!1.12e-21!50;UBERON:0006238!1.12e-21!50;UBERON:0002616!2.98e-21!49;UBERON:0003056!4.67e-19!49;UBERON:0003080!3.05e-17!40;UBERON:0002020!4.27e-17!34;UBERON:0002780!1.08e-16!39;UBERON:0001890!1.08e-16!39;UBERON:0006240!1.08e-16!39;UBERON:0002791!5.89e-14!29;UBERON:0003528!5.89e-14!29;UBERON:0001893!5.89e-14!29;UBERON:0007811!1.89e-10!86;UBERON:0000153!4.85e-10!94;UBERON:0000956!3.19e-09!21;UBERON:0001869!3.19e-09!21;UBERON:0000203!3.19e-09!21;UBERON:0002619!4.22e-07!17 | |ontology_enrichment_uberon=UBERON:0004121!5.63e-33!102;UBERON:0000924!5.63e-33!102;UBERON:0006601!5.63e-33!102;UBERON:0001017!1.67e-32!73;UBERON:0005743!1.67e-32!73;UBERON:0000073!1.04e-31!75;UBERON:0001016!1.04e-31!75;UBERON:0002346!7.93e-28!71;UBERON:0003075!7.93e-28!71;UBERON:0007284!7.93e-28!71;UBERON:0000033!2.87e-24!63;UBERON:0001049!2.61e-23!52;UBERON:0005068!2.61e-23!52;UBERON:0006241!2.61e-23!52;UBERON:0007135!2.61e-23!52;UBERON:0000955!1.12e-21!50;UBERON:0006238!1.12e-21!50;UBERON:0002616!2.98e-21!49;UBERON:0003056!4.67e-19!49;UBERON:0003080!3.05e-17!40;UBERON:0002020!4.27e-17!34;UBERON:0002780!1.08e-16!39;UBERON:0001890!1.08e-16!39;UBERON:0006240!1.08e-16!39;UBERON:0002791!5.89e-14!29;UBERON:0003528!5.89e-14!29;UBERON:0001893!5.89e-14!29;UBERON:0007811!1.89e-10!86;UBERON:0000153!4.85e-10!94;UBERON:0000956!3.19e-09!21;UBERON:0001869!3.19e-09!21;UBERON:0000203!3.19e-09!21;UBERON:0002619!4.22e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.78e-34,73;UBERON:0001016,3.92e-33,75;UBERON:0004121,8.60e-32,95;UBERON:0000924,8.60e-32,95;UBERON:0006601,8.60e-32,95;UBERON:0002346,1.58e-27,64;UBERON:0003075,1.58e-27,64;UBERON:0007284,1.58e-27,64;UBERON:0000073,1.06e-25,54;UBERON:0010371,4.79e-25,73;UBERON:0001049,2.47e-24,52;UBERON:0005068,2.47e-24,52;UBERON:0006241,2.47e-24,52;UBERON:0007135,2.47e-24,52;UBERON:0000955,9.89e-21,47;UBERON:0006238,9.89e-21,47;UBERON:0002616,2.71e-20,46;UBERON:0003056,7.03e-20,49;UBERON:0010314,1.79e-18,92;UBERON:0003080,5.59e-18,40;UBERON:0002020,7.96e-18,34;UBERON:0002780,2.10e-17,39;UBERON:0001890,2.10e-17,39;UBERON:0006240,2.10e-17,39;UBERON:0003528,1.54e-14,29;UBERON:0002791,1.54e-14,29;UBERON:0001893,1.54e-14,29;UBERON:0000956,1.39e-09,21;UBERON:0001869,1.39e-09,21;UBERON:0000203,1.39e-09,21;UBERON:0002619,2.31e-07,17;UBERON:0003076,5.88e-07,12;UBERON:0003057,5.88e-07,12 | |||
|phase1_expression=3.84357233051505,1.39590163055744,1.36499771816861,0.30246421130683,0.500895729946347,0.33575854382378,1.16806320297763,0.645616617207881,0.281577444303333,0.468129052643987,0.856089841127525,0.398860794976682,0.856003649656029,0.786783621770977,0.333109761815663,0.404950534779652,0,0.473193248037357,0.411343300817216,0,2.72138528483423,0.297872853602656,1.04479915655574,0.47997726838022,0.22940928106717,2.8711598205751,1.29228598847722,0.646413698057667,1.52018735565099,1.51218077855958,0.443461021310609,1.27006134691926,1.23012957516914,0,0.288851619751275,1.32987716286794,1.02084678131185,0,0,0,0,0,0,4.15459499319405,4.25783111121961,2.75320128242522,3.12956537739216,2.61630187656536,2.63623419281366,2.13872888981712,1.39986421625363,1.43752564364972,1.00669563634642,3.62681071005672,0,1.28629718017973,0.85960031981627,1.54701627683233,18.0061650165042,13.2247744818008,19.6487735086916,1.0165335962074,2.66788438833342,2.6996991518442,0.988866362566974,2.8419204597844,7.49000276296012,6.91592949578798,7.98410014775278,6.61529097825284,7.78202357000113,6.85562362569129,5.52171352379034,12.9840247167851,7.76348315247715,11.0306254393203,5.50579404996943,5.87361755191863,5.83704826373725,14.7712642257817,13.8146341839639,12.5019208933622,6.42120897703176,5.06486349028512,5.65353516774197,8.54422897873636,7.54569908235246,8.38797506213853,1.13589289999776,1.43585964202892,1.44932244350839,0.860423876981386,0,1.07940638327563,1.29955283489534,0.448026887097336,1.12355536105401,0.170430322578058,0,1.41335829804136,2.95771181531029,1.28326477414318,2.54805239706646,0,1.29894624606728,0.760079596425296,0.505524445014783,0.68510327831436,0.258937883647172,3.11728492036132,1.90833859442749,1.82679286987285,2.30615497256059,2.11011696773672,2.70454026412121,2.63899841792318,0.247194967734374,0.578397427679647,0,1.45590164952668,0.883366073841574,0,0,2.92780797011547,3.14170060220183,1.27728527604296,0,0,0,5.24267237916879,4.11750542536764,12.942398267625,3.30266208365325,2.30143911597297,2.70124457927428,2.27137768294861,1.12023300235348,1.36847667671102,1.76905930903572,2.94618598241064,2.34216797332867,1.37941262660084,3.06105620669094,2.10986744970001,2.58538696775046,3.20284300712124,3.74806898238915,2.06962696591213,1.94011193639558,0.945530400839096,2.99116911078713,2.19195732427575,1.66828349535359,1.0447564995665,1.23469281844766,1.79130840136644,0,0,0,0,0,0,0.473489471170421,0.590292695242212,0.617068451549513,0.697601834251224,0.804820204198858,0.350296027101508,0.822799249567402,0.492502392237286,0.729619285912702,1.60819986167866,1.3173006917463,1.61047702512446,2.73376933133365,6.89460902941206,0.991256348951394,1.58670339998127,1.2797295032114,1.16118335930219,1.15980715189884,1.00841762311671,0.667134131534611,0.760902504450237,1.42358718463353,1.15289268306808,2.01068167040216,1.98956472041151,2.33956904542944,0.898819408654221,1.08069024937347,0.597423819763102,1.70701110857774,1.25673363870702,0,2.03651327845314,2.13347735884388,1.82353131714828,1.39120381673366,0.442830443938806,2.04098346193787,1.85095745882701,0.296452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0,0.648540907100142,0.549122826376163,7.18841032636773,0.744281895337007,0,1.01031551178845,0.179397413521912,0.964887042726734,2.21703828199926,0.947457058852424,1.95557971730431,1.01847051465113,0.938760993154008,1.50755631697634,1.19021820443007,0.975668239288994,0.630540576424764,0.221464689648775,1.2756381492599,1.63863314715738,1.20879487306127,2.31438493730419,0,0.54390568381871,0.491764273019036,1.93155722413313,4.17431533968259,3.16471553798949,2.78689407140348,1.26235463602186,3.78609863299508,3.51394869866975,1.93881057959519,3.10659437338318,2.89638276307112,6.22768367735431,2.02405350837447,2.63030272120181,2.37172666767914,3.21321316421807,3.69044221541498,1.78065603667255,2.60619134965722,2.14461159864296,5.30980553359851,1.69946445308487,1.51161778482376,1.50884063804718,2.36241514304618,1.53717573971964,1.55056975900933,1.81766864738753,0,0.948110273807448,1.05418608574999,3.09406629744561,2.04263763452273,3.06103859853227,4.91562998374467,3.64372959553707,4.61084607469911,2.85390108163313,1.48094118541909,5.17590413494819,1.64270195644597,1.27099242518292,3.08739757276947,1.81374878235628,0.968786560175433,1.38719727334758,1.3130957840345,0.820704498725306,0,4.82105785227325,0.341741761595705,0.619160603889667,0,0.376736914009382,0.136694227721025,0.457556346413045,1.69978429993855,0.559805809294632,0.829199842826543,4.77335309007557,1.89801596148681,2.03319467126849,1.18805874903981,1.46361807210128,2.40198820120795,2.29269388854195,1.57041565878138,3.40282724579238,3.36998930558661,2.4853572523477,0.56369293868419,1.49516546043979,0.992750942742586,1.36115831840833,0.904118764344118,1.520605129417,1.64300134104056,1.95306577265925,1.57289016638566,0.241584120826006,1.44015003128933,0.948033361884535,0.810900861160657,0.410843828659309,0.25984164595559,0.179026695667481,0,0.2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| ||
|short_description=p3@March9 | |short_description=p3@March9 | ||
}} | }} |
Latest revision as of 17:12, 25 September 2015
Short description: | p3@March9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_March9_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -154bp_to_ENSMUST00000040307, NM_001033262, uc007hhu.1_5end |
EntrezGene: | March9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.46e-20 | 44 |
neurectodermal cell | 7.46e-20 | 44 |
neural cell | 1.67e-19 | 43 |
neuron | 5.47e-19 | 33 |
neuronal stem cell | 5.47e-19 | 33 |
neuroblast | 5.47e-19 | 33 |
electrically signaling cell | 5.47e-19 | 33 |
electrically responsive cell | 2.23e-18 | 39 |
electrically active cell | 2.23e-18 | 39 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
embryonic cell | 6.96e-11 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.78e-34 | 73 |
nervous system | 3.92e-33 | 75 |
ectoderm-derived structure | 8.60e-32 | 95 |
ectoderm | 8.60e-32 | 95 |
presumptive ectoderm | 8.60e-32 | 95 |
neurectoderm | 1.58e-27 | 64 |
neural plate | 1.58e-27 | 64 |
presumptive neural plate | 1.58e-27 | 64 |
regional part of nervous system | 1.06e-25 | 54 |
ecto-epithelium | 4.79e-25 | 73 |
neural tube | 2.47e-24 | 52 |
neural rod | 2.47e-24 | 52 |
future spinal cord | 2.47e-24 | 52 |
neural keel | 2.47e-24 | 52 |
brain | 9.89e-21 | 47 |
future brain | 9.89e-21 | 47 |
regional part of brain | 2.71e-20 | 46 |
pre-chordal neural plate | 7.03e-20 | 49 |
structure with developmental contribution from neural crest | 1.79e-18 | 92 |
anterior neural tube | 5.59e-18 | 40 |
gray matter | 7.96e-18 | 34 |
regional part of forebrain | 2.10e-17 | 39 |
forebrain | 2.10e-17 | 39 |
future forebrain | 2.10e-17 | 39 |
brain grey matter | 1.54e-14 | 29 |
regional part of telencephalon | 1.54e-14 | 29 |
telencephalon | 1.54e-14 | 29 |
cerebral cortex | 1.39e-09 | 21 |
cerebral hemisphere | 1.39e-09 | 21 |
pallium | 1.39e-09 | 21 |
regional part of cerebral cortex | 2.31e-07 | 17 |
posterior neural tube | 5.88e-07 | 12 |
chordal neural plate | 5.88e-07 | 12 |