FFCP PHASE1:Hg19::chr12:7848400..7848403,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9573 | |EntrezGene=9573 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4218 | |HGNC=4218 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NR23 | |UniProt=Q9NR23 | ||
|association_with_transcript=-28bp_to_ENST00000329913_5end | |association_with_transcript=-28bp_to_ENST00000329913_5end | ||
|cluster_id=chr12:7848400..7848403,- | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_3_at_GDF3_5end | |description=CAGE_peak_3_at_GDF3_5end | ||
|id=chr12:7848400..7848403,- | |id=chr12:7848400..7848403,- | ||
|ontology_enrichment_celltype=CL:0002322!9.00e-53!5;CL:0000039!5.10e-25!7;CL:0000586!5.10e-25!7;CL:0000540!2.89e-16!6;CL:0000031!2.89e-16!6;CL:0000404!2.89e-16!6;CL:0000047!2.38e-12!8;CL:0000148!3.21e-10!10;CL:0000541!3.21e-10!10;CL:0000147!1.93e-07!14 | |ontology_enrichment_celltype=CL:0002322!9.00e-53!5;CL:0000039!5.10e-25!7;CL:0000586!5.10e-25!7;CL:0000540!2.89e-16!6;CL:0000031!2.89e-16!6;CL:0000404!2.89e-16!6;CL:0000047!2.38e-12!8;CL:0000148!3.21e-10!10;CL:0000541!3.21e-10!10;CL:0000147!1.93e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.05e-53;5!CL:0000039;1.30e-38;7!CL:0000586;1.30e-38;7!CL:0002321;6.33e-18;15!CL:0000148;1.53e-15;10!CL:0000540;7.08e-12;6!CL:0000404;7.08e-12;6!CL:0000147;2.77e-11;14!CL:0000710;4.51e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.30e-53,5;CL:0000039,1.30e-38,7;CL:0000586,1.30e-38,7;CL:0000148,1.43e-15,10;CL:0000541,1.43e-15,10;CL:0000540,7.91e-12,6;CL:0000031,7.91e-12,6;CL:0000404,7.91e-12,6;CL:0000147,2.62e-11,14;CL:0000047,4.19e-09,8;CL:0000710,4.35e-08,20;CL:0000133,8.73e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.48e-27;10!UBERON:0005564;3.48e-27;10!CL:0000031;7.08e-12;6 | |||
|ontology_enrichment_disease=DOID:3095!4.22e-17!22;DOID:2994!4.22e-17!22;DOID:9119!1.19e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.70e-19;22!DOID:2994;4.70e-19;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.80e-19,22;DOID:2994,4.80e-19,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.21e-22!8;UBERON:0003135!4.97e-16!11;UBERON:0000991!1.09e-12!21;UBERON:0009196!1.09e-12!21;UBERON:0009117!1.09e-12!21;UBERON:0005564!1.09e-12!21;UBERON:0004176!4.15e-12!22;UBERON:0003101!4.13e-08!22;UBERON:0000079!4.13e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.44e-34;8!UBERON:0003135;9.32e-25;11!UBERON:0000922;5.84e-15;49!UBERON:0000991;3.73e-13;21!UBERON:0003101;1.43e-12;22!UBERON:0000079;1.43e-12;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.45e-34,8;UBERON:0003135,9.32e-25,11;UBERON:0000991,3.73e-13,21;UBERON:0009196,3.73e-13,21;UBERON:0009117,3.73e-13,21;UBERON:0005564,3.73e-13,21;UBERON:0004176,1.43e-12,22;UBERON:0003101,1.43e-12,22;UBERON:0000079,1.43e-12,22 | |||
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|short_description=p3@GDF3 | |short_description=p3@GDF3 | ||
}} | }} |
Latest revision as of 22:57, 24 September 2015
Short description: | p3@GDF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GDF3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | -28bp_to_ENST00000329913_5end |
EntrezGene: | GDF3 |
HGNC: | 4218 |
UniProt: | Q9NR23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.30e-53 | 5 |
germ line cell | 1.30e-38 | 7 |
germ cell | 1.30e-38 | 7 |
melanocyte | 1.43e-15 | 10 |
melanoblast | 1.43e-15 | 10 |
neuron | 7.91e-12 | 6 |
neuroblast | 7.91e-12 | 6 |
electrically signaling cell | 7.91e-12 | 6 |
pigment cell | 2.62e-11 | 14 |
neuronal stem cell | 4.19e-09 | 8 |
neurecto-epithelial cell | 4.35e-08 | 20 |
neurectodermal cell | 8.73e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 7.45e-34 | 8 |
male reproductive organ | 9.32e-25 | 11 |
gonad | 3.73e-13 | 21 |
indifferent external genitalia | 3.73e-13 | 21 |
indifferent gonad | 3.73e-13 | 21 |
gonad primordium | 3.73e-13 | 21 |
external genitalia | 1.43e-12 | 22 |
male organism | 1.43e-12 | 22 |
male reproductive system | 1.43e-12 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.80e-19 | 22 |
germ cell cancer | 4.80e-19 | 22 |