FFCP PHASE1:Mm9::chr11:77029682..77029781,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=237860 | |EntrezGene=237860 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=788 | |||
|TSSclassifier=NA | |||
|UniProt=Q5SW75 | |UniProt=Q5SW75 | ||
|association_with_transcript=-7bp_to_ENSMUST00000037912,ENSMUST00000156488_5end | |association_with_transcript=-7bp_to_ENSMUST00000037912,ENSMUST00000156488_5end | ||
|cluster_id=chr11:77029682..77029781,+ | |||
|description=CAGE_peak_1_at_Ssh2_5end | |description=CAGE_peak_1_at_Ssh2_5end | ||
|id=chr11:77029682..77029781,+ | |id=chr11:77029682..77029781,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.98e-12!33;CL:0000047!1.98e-12!33;CL:0000031!1.98e-12!33;CL:0000404!1.98e-12!33;CL:0000117!5.40e-11!23;CL:0000337!5.40e-11!23;CL:0000393!5.54e-08!39;CL:0000211!5.54e-08!39 | |ontology_enrichment_celltype=CL:0000540!1.98e-12!33;CL:0000047!1.98e-12!33;CL:0000031!1.98e-12!33;CL:0000404!1.98e-12!33;CL:0000117!5.40e-11!23;CL:0000337!5.40e-11!23;CL:0000393!5.54e-08!39;CL:0000211!5.54e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.98e-12,33;CL:0000047,1.98e-12,33;CL:0000031,1.98e-12,33;CL:0000404,1.98e-12,33;CL:0000117,5.40e-11,23;CL:0000337,5.40e-11,23;CL:0000393,5.54e-08,39;CL:0000211,5.54e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.24e-13!73;UBERON:0005743!4.24e-13!73;UBERON:0002020!1.86e-12!34;UBERON:0000073!2.89e-12!75;UBERON:0001016!2.89e-12!75;UBERON:0001049!9.19e-11!52;UBERON:0005068!9.19e-11!52;UBERON:0006241!9.19e-11!52;UBERON:0007135!9.19e-11!52;UBERON:0002791!1.28e-10!29;UBERON:0003528!1.28e-10!29;UBERON:0001893!1.28e-10!29;UBERON:0000955!2.04e-10!50;UBERON:0006238!2.04e-10!50;UBERON:0007811!2.79e-10!86;UBERON:0002616!5.22e-10!49;UBERON:0000153!5.64e-10!94;UBERON:0000033!8.11e-09!63;UBERON:0003056!9.69e-09!49;UBERON:0000064!1.08e-08!99;UBERON:0003080!1.45e-08!40;UBERON:0002346!2.60e-08!71;UBERON:0003075!2.60e-08!71;UBERON:0007284!2.60e-08!71;UBERON:0002780!2.89e-08!39;UBERON:0001890!2.89e-08!39;UBERON:0006240!2.89e-08!39;UBERON:0000956!4.19e-08!21;UBERON:0001869!4.19e-08!21;UBERON:0000203!4.19e-08!21;UBERON:0004121!9.20e-08!102;UBERON:0000924!9.20e-08!102;UBERON:0006601!9.20e-08!102 | |ontology_enrichment_uberon=UBERON:0001017!4.24e-13!73;UBERON:0005743!4.24e-13!73;UBERON:0002020!1.86e-12!34;UBERON:0000073!2.89e-12!75;UBERON:0001016!2.89e-12!75;UBERON:0001049!9.19e-11!52;UBERON:0005068!9.19e-11!52;UBERON:0006241!9.19e-11!52;UBERON:0007135!9.19e-11!52;UBERON:0002791!1.28e-10!29;UBERON:0003528!1.28e-10!29;UBERON:0001893!1.28e-10!29;UBERON:0000955!2.04e-10!50;UBERON:0006238!2.04e-10!50;UBERON:0007811!2.79e-10!86;UBERON:0002616!5.22e-10!49;UBERON:0000153!5.64e-10!94;UBERON:0000033!8.11e-09!63;UBERON:0003056!9.69e-09!49;UBERON:0000064!1.08e-08!99;UBERON:0003080!1.45e-08!40;UBERON:0002346!2.60e-08!71;UBERON:0003075!2.60e-08!71;UBERON:0007284!2.60e-08!71;UBERON:0002780!2.89e-08!39;UBERON:0001890!2.89e-08!39;UBERON:0006240!2.89e-08!39;UBERON:0000956!4.19e-08!21;UBERON:0001869!4.19e-08!21;UBERON:0000203!4.19e-08!21;UBERON:0004121!9.20e-08!102;UBERON:0000924!9.20e-08!102;UBERON:0006601!9.20e-08!102 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.24e-13,73;UBERON:0002020,1.86e-12,34;UBERON:0001016,2.89e-12,75;UBERON:0002346,7.17e-12,64;UBERON:0003075,7.17e-12,64;UBERON:0007284,7.17e-12,64;UBERON:0000073,8.62e-12,54;UBERON:0001049,9.19e-11,52;UBERON:0005068,9.19e-11,52;UBERON:0006241,9.19e-11,52;UBERON:0007135,9.19e-11,52;UBERON:0003528,1.28e-10,29;UBERON:0002791,1.28e-10,29;UBERON:0001893,1.28e-10,29;UBERON:0004121,1.77e-10,95;UBERON:0000924,1.77e-10,95;UBERON:0006601,1.77e-10,95;UBERON:0010371,5.92e-10,73;UBERON:0000955,3.30e-09,47;UBERON:0006238,3.30e-09,47;UBERON:0002616,8.18e-09,46;UBERON:0003056,9.69e-09,49;UBERON:0003080,1.45e-08,40;UBERON:0002780,2.89e-08,39;UBERON:0001890,2.89e-08,39;UBERON:0006240,2.89e-08,39;UBERON:0000956,4.19e-08,21;UBERON:0001869,4.19e-08,21;UBERON:0000203,4.19e-08,21 | |||
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|phase1_expression=6.72625157840135,39.0852456556084,35.0349414329943,88.924478124208,83.1486911710936,28.7073554969332,23.5948767001481,15.236552166106,19.5696323790817,23.4064526321993,4.45166717386313,6.1424562426409,13.5248576645653,14.5117868015536,28.647439516147,22.8797052150503,23.0855419782288,22.3978137404349,25.9146279514846,23.7658205006897,73.2222728200711,9.63122226648587,11.7539905112521,15.359272588167,12.6175104586944,23.5435105287158,22.3996238002719,23.0554218973901,15.0118501370535,19.4063199915147,11.0865255327652,26.6712882853045,33.2134985295668,31.6963362030877,19.3530585233354,14.1299448554718,17.150225926039,59.8500231953778,46.880120671428,48.1641844455894,85.8817972525281,77.8671852852628,75.73961507286,7.55380907853464,7.19776211658553,6.05704282133549,7.82391344348039,11.1192829754028,5.05278220289285,6.80504646759992,6.57936181639204,8.62515386189829,25.3351735147182,35.5427449585559,36.6342241065286,11.5766746216176,14.0401385569991,9.7977697532714,63.7296851707733,57.6600167406516,67.186128771655,4.06613438482959,4.4464739805557,2.6996991518442,2.96659908770092,1.4209602298922,4.49400165777607,5.37905627450176,43.9643956187945,47.6570962310868,40.8030425021681,30.564655331207,23.8538024227743,55.1208596467293,60.0951103284342,68.9414089957516,61.6648933596577,37.9231394113008,33.6398307831173,63.4373043982232,63.9498628780843,59.3841242434706,23.7305549151174,21.9477417912355,30.559649555362,54.2116597271549,44.4199644093201,48.0910570229276,10.9802980333117,13.4517376990078,8.98579914975201,4.30211938490693,7.47968467078526,3.2382191498269,11.0461990966104,12.9927797258227,12.4995533917259,1.53387290320252,3.11743205523443,4.24007489412408,9.01397886570755,12.8326477414318,35.6727335589304,42.6640021891999,7.57718643539249,6.08063677140237,9.0994400102661,19.8679950711164,47.9035084747268,7.57054909230606,10.9295755862666,10.6562917409249,5.07354093963329,10.2491395575783,11.2885158850277,7.91699525376955,2.96633961281249,16.1951279750301,39.8074748377443,16.3384518446883,24.0717255121829,23.2740121504907,26.0948465705371,47.4304891158706,38.1193006400488,30.9103036802396,11.3824368280624,7.7987355029143,10.1656181658452,31.6058249144176,26.0775343606617,59.308854197272,29.7239587528793,25.8272611903634,29.9214784165767,34.5573890334324,11.2023300235348,20.7759640918855,11.1198013710817,25.8843482740363,17.566259799965,10.8053989083732,20.8872070574205,26.6747527569216,29.255694635071,28.3131321829518,23.9876414872906,23.5420067372504,14.8741915123661,19.856138417621,21.4660371480018,9.42541649438572,15.5706459566335,23.3328951569852,21.1955600500182,11.3449532086541,5.61770549850588,9.26452465612975,12.7873574728017,21.7482061162277,19.7001890384121,17.2859579002574,24.6214525008619,22.0375939557092,19.4376562238097,18.3701816352822,19.047411499373,14.8291984806305,22.5446994381468,16.7450813360677,16.3758995282629,13.7427988179812,18.8813099150304,13.1522290385164,30.2817525932343,40.9560357269552,66.0837565967596,23.2716498663919,16.8497717922835,18.5789337488351,23.453877960621,14.5212137728807,17.3454874198999,13.3157938278791,15.1849299694244,9.71723832871664,9.0480675168097,11.937388322469,10.3330966173134,26.0657628509724,21.6138049874694,22.7021051509979,7.01771233526402,18.1655135049469,18.0332377076929,21.383389423758,16.2920089220806,18.0249057118119,18.5283053774074,14.9086249459398,13.1878931386755,13.4502908674763,5.63259991465583,24.0256952231175,17.1006325748487,18.6635553279429,23.1260538382893,16.4000468631643,14.2590476997595,19.8510334841059,9.72811360650212,7.4131581560782,30.1913233707445,5.58211421502755,10.6092808858951,10.8608917517258,6.63770430031075,7.71909634181387,14.7802552133284,10.0430448238357,15.4816727619925,17.144253663294,16.1936271319066,18.5931945760415,14.7587057349329,14.6350235893349,19.2314875809553,15.5025282754142,18.4967531642685,19.8274610806043,17.9592381140531,14.7542039753142,7.53956419696361,6.52686820582452,7.86822836830458,9.93372286697037,31.3073650476194,33.8741774251467,3.77050374366353,13.1284882146274,26.5026904309656,30.8446607994344,36.406554216843,28.9152245522588,29.8550223270408,58.3137653424995,30.3608026256171,27.179794785752,34.3900366813475,41.7717711348349,8.51640511249612,6.58842733568844,9.61033060186099,17.9817434040064,7.96470830039777,11.4106898992841,12.3952658355548,10.5618844663303,8.56375489354241,12.604841065701,10.0787034335606,17.4496190149203,9.26893183800275,12.009396801561,12.6502330289999,11.3449097573006,19.4050575279659,19.0864759673189,9.70190128370659,12.0028739617692,19.8621061679346,22.4744710178609,14.4803138129866,10.0473433207818,7.50949465803873,5.71946591332314,10.1443063105282,44.0246295353752,25.672843844649,21.2301495747109,17.1896175364517,22.3231623653283,13.1166376483433,28.370071207608,23.7510524309015,17.9556575128004,19.26023084645,22.2274779265535,29.6626474154625,18.7598102029349,12.2384469595576,13.4353394230712,14.9255971708778,3.81868247206045,13.4442797271983,17.2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| ||
|short_description=p1@Ssh2 | |short_description=p1@Ssh2 | ||
}} | }} |
Latest revision as of 17:13, 25 September 2015
Short description: | p1@Ssh2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ssh2_5end |
Coexpression cluster: | MCL_coexpression_mm9:788 |
Association with transcript: | -7bp_to_ENSMUST00000037912, ENSMUST00000156488_5end |
EntrezGene: | Ssh2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.98e-12 | 33 |
neuronal stem cell | 1.98e-12 | 33 |
neuroblast | 1.98e-12 | 33 |
electrically signaling cell | 1.98e-12 | 33 |
CNS neuron (sensu Vertebrata) | 5.40e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.40e-11 | 23 |
electrically responsive cell | 5.54e-08 | 39 |
electrically active cell | 5.54e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.24e-13 | 73 |
gray matter | 1.86e-12 | 34 |
nervous system | 2.89e-12 | 75 |
neurectoderm | 7.17e-12 | 64 |
neural plate | 7.17e-12 | 64 |
presumptive neural plate | 7.17e-12 | 64 |
regional part of nervous system | 8.62e-12 | 54 |
neural tube | 9.19e-11 | 52 |
neural rod | 9.19e-11 | 52 |
future spinal cord | 9.19e-11 | 52 |
neural keel | 9.19e-11 | 52 |
brain grey matter | 1.28e-10 | 29 |
regional part of telencephalon | 1.28e-10 | 29 |
telencephalon | 1.28e-10 | 29 |
ectoderm-derived structure | 1.77e-10 | 95 |
ectoderm | 1.77e-10 | 95 |
presumptive ectoderm | 1.77e-10 | 95 |
ecto-epithelium | 5.92e-10 | 73 |
brain | 3.30e-09 | 47 |
future brain | 3.30e-09 | 47 |
regional part of brain | 8.18e-09 | 46 |
pre-chordal neural plate | 9.69e-09 | 49 |
anterior neural tube | 1.45e-08 | 40 |
regional part of forebrain | 2.89e-08 | 39 |
forebrain | 2.89e-08 | 39 |
future forebrain | 2.89e-08 | 39 |
cerebral cortex | 4.19e-08 | 21 |
cerebral hemisphere | 4.19e-08 | 21 |
pallium | 4.19e-08 | 21 |